data_I65 # _chem_comp.id I65 _chem_comp.name "benzyl [(2S,3R)-1-({(2S)-1-[2-(3-amino-3-oxopropyl)-2-propanoylhydrazinyl]-3-cyclohexyl-1-oxopropan-2-yl}amino)-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H49 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-10-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 603.750 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I65 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7SHA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I65 N N1 N 0 1 N N N N N N -8.993 -18.408 -17.381 3.373 -0.284 -0.222 N I65 1 I65 C C1 C 0 1 Y N N N N N -5.928 -23.353 -20.007 10.155 1.947 0.442 C I65 2 I65 O O1 O 0 1 N N N N N N -7.069 -19.680 -16.798 5.611 0.273 -0.576 O I65 3 I65 C1 C2 C 0 1 Y N N N N N -5.670 -22.045 -20.417 9.927 0.584 0.471 C1 I65 4 I65 C10 C3 C 0 1 N N S N N N -9.928 -13.908 -17.467 -1.378 0.630 0.179 C10 I65 5 I65 C11 C4 C 0 1 N N N N N N -11.406 -13.668 -17.253 -2.679 -0.041 -0.183 C11 I65 6 I65 C12 C5 C 0 1 N N N N N N -13.896 -13.717 -14.990 -6.076 0.170 -0.359 C12 I65 7 I65 C13 C6 C 0 1 N N N N N N -14.382 -14.887 -15.837 -6.011 -0.055 -1.870 C13 I65 8 I65 C14 C7 C 0 1 N N N N N N -15.259 -15.746 -14.937 -7.159 0.661 -2.535 C14 I65 9 I65 C15 C8 C 0 1 N N N N N N -13.503 -11.703 -16.309 -5.076 -1.830 0.607 C15 I65 10 I65 C16 C9 C 0 1 N N N N N N -12.471 -10.721 -16.844 -3.929 -2.547 1.272 C16 I65 11 I65 C17 C10 C 0 1 N N N N N N -13.088 -9.359 -16.699 -4.316 -4.005 1.525 C17 I65 12 I65 C18 C11 C 0 1 N N R N N N -11.124 -18.321 -18.529 1.903 -2.220 -0.494 C18 I65 13 I65 C2 C12 C 0 1 Y N N N N N -5.615 -21.008 -19.486 8.817 0.055 -0.160 C2 I65 14 I65 C20 C13 C 0 1 N N N N N N -11.377 -20.679 -19.172 1.056 -3.507 1.342 C20 I65 15 I65 C21 C14 C 0 1 N N N N N N -10.523 -21.378 -18.121 -0.388 -3.101 1.043 C21 I65 16 I65 C22 C15 C 0 1 N N N N N N -11.346 -21.441 -20.485 1.223 -3.730 2.846 C22 I65 17 I65 C23 C16 C 0 1 N N N N N N -12.821 -20.639 -18.679 1.386 -4.802 0.595 C23 I65 18 I65 C24 C17 C 0 1 N N N N N N -9.291 -12.770 -18.269 -1.449 2.113 -0.190 C24 I65 19 I65 C25 C18 C 0 1 N N N N N N -7.760 -12.836 -18.280 -2.495 2.807 0.685 C25 I65 20 I65 C26 C19 C 0 1 N N N N N N -7.209 -12.948 -16.862 -2.697 4.243 0.197 C26 I65 21 I65 C27 C20 C 0 1 N N N N N N -5.680 -12.987 -16.859 -3.743 4.937 1.072 C27 I65 22 I65 C28 C21 C 0 1 N N N N N N -5.091 -11.780 -17.584 -3.261 4.955 2.525 C28 I65 23 I65 C29 C22 C 0 1 N N N N N N -5.666 -11.635 -18.991 -3.059 3.519 3.013 C29 I65 24 I65 C3 C23 C 0 1 Y N N N N N -5.824 -21.283 -18.135 7.934 0.889 -0.820 C3 I65 25 I65 C30 C24 C 0 1 N N N N N N -7.194 -11.580 -18.945 -2.013 2.825 2.137 C30 I65 26 I65 C4 C25 C 0 1 Y N N N N N -6.080 -22.588 -17.721 8.162 2.252 -0.849 C4 I65 27 I65 C5 C26 C 0 1 Y N N N N N -6.128 -23.620 -18.661 9.273 2.781 -0.219 C5 I65 28 I65 C6 C27 C 0 1 N N N N N N -5.763 -20.164 -17.118 6.724 0.312 -1.507 C6 I65 29 I65 C60 C28 C 0 1 N N N N N N -12.117 -17.360 -19.180 3.034 -2.990 -1.180 C60 I65 30 I65 C7 C29 C 0 1 N N N N N N -7.747 -18.755 -17.689 4.445 -0.220 -1.036 C7 I65 31 I65 C8 C30 C 0 1 N N S N N N -9.823 -17.589 -18.234 2.078 -0.722 -0.750 C8 I65 32 I65 C9 C31 C 0 1 N N N N N N -10.131 -16.294 -17.544 0.973 0.037 -0.063 C9 I65 33 I65 N1 N2 N 0 1 N N N N N N -9.718 -15.177 -18.140 -0.281 -0.004 -0.556 N1 I65 34 I65 N2 N3 N 0 1 N N N N N N -11.777 -13.186 -16.062 -3.776 0.163 0.573 N2 I65 35 I65 N3 N4 N 0 1 N N N N N N -13.047 -12.850 -15.814 -4.961 -0.526 0.287 N3 I65 36 I65 N4 N5 N 0 1 N N N N N N -16.194 -16.491 -15.522 -7.305 0.603 -3.873 N4 I65 37 I65 O1 O2 O 0 1 N N N N N N -7.149 -18.341 -18.673 4.360 -0.605 -2.185 O1 I65 38 I65 O2 O3 O 0 1 N N N N N N -10.725 -16.279 -16.472 1.211 0.685 0.934 O2 I65 39 I65 O3 O4 O 0 1 N N N N N N -12.209 -13.922 -18.139 -2.738 -0.764 -1.155 O3 I65 40 I65 O4 O5 O 0 1 N N N N N N -15.092 -15.726 -13.726 -7.950 1.290 -1.865 O4 I65 41 I65 O5 O6 O 0 1 N N N N N N -14.703 -11.428 -16.321 -6.102 -2.427 0.360 O5 I65 42 I65 O6 O7 O 0 1 N N N N N N -10.829 -19.379 -19.437 1.941 -2.471 0.912 O6 I65 43 I65 H1 H1 H 0 1 N N N N N N -9.375 -18.730 -16.515 3.459 -0.045 0.714 H1 I65 44 I65 H2 H2 H 0 1 N N N N N N -5.972 -24.152 -20.732 11.021 2.361 0.938 H2 I65 45 I65 H3 H3 H 0 1 N N N N N N -5.511 -21.833 -21.464 10.617 -0.068 0.987 H3 I65 46 I65 H4 H4 H 0 1 N N N N N N -9.440 -13.942 -16.482 -1.204 0.530 1.250 H4 I65 47 I65 H5 H5 H 0 1 N N N N N N -14.760 -13.145 -14.622 -6.010 1.238 -0.147 H5 I65 48 I65 H6 H6 H 0 1 N N N N N N -13.316 -14.096 -14.136 -7.019 -0.218 0.027 H6 I65 49 I65 H7 H7 H 0 1 N N N N N N -14.965 -14.518 -16.694 -5.069 0.333 -2.256 H7 I65 50 I65 H8 H8 H 0 1 N N N N N N -13.525 -15.473 -16.202 -6.078 -1.122 -2.082 H8 I65 51 I65 H9 H9 H 0 1 N N N N N N -12.253 -10.932 -17.901 -3.053 -2.511 0.623 H9 I65 52 I65 H10 H10 H 0 1 N N N N N N -11.542 -10.785 -16.259 -3.698 -2.062 2.221 H10 I65 53 I65 H11 H11 H 0 1 N N N N N N -12.387 -8.597 -17.071 -5.191 -4.041 2.173 H11 I65 54 I65 H12 H12 H 0 1 N N N N N N -14.020 -9.315 -17.281 -4.546 -4.490 0.576 H12 I65 55 I65 H13 H13 H 0 1 N Y N N N N -13.309 -9.168 -15.639 -3.486 -4.523 2.005 H13 I65 56 I65 H14 H14 H 0 1 N N N N N N -11.549 -18.711 -17.593 0.945 -2.548 -0.896 H14 I65 57 I65 H15 H15 H 0 1 N N N N N N -5.412 -19.998 -19.810 8.640 -1.010 -0.137 H15 I65 58 I65 H16 H16 H 0 1 N N N N N N -10.560 -20.809 -17.180 -1.068 -3.843 1.462 H16 I65 59 I65 H17 H17 H 0 1 N N N N N N -10.909 -22.394 -17.951 -0.592 -2.128 1.491 H17 I65 60 I65 H18 H18 H 0 1 N N N N N N -9.483 -21.436 -18.473 -0.534 -3.043 -0.035 H18 I65 61 I65 H19 H19 H 0 1 N N N N N N -11.758 -22.450 -20.334 2.253 -4.019 3.059 H19 I65 62 I65 H20 H20 H 0 1 N N N N N N -11.950 -20.907 -21.233 0.988 -2.808 3.378 H20 I65 63 I65 H21 H21 H 0 1 N N N N N N -10.308 -21.519 -20.839 0.548 -4.520 3.174 H21 I65 64 I65 H22 H22 H 0 1 N N N N N N -12.869 -20.091 -17.727 1.250 -4.649 -0.475 H22 I65 65 I65 H23 H23 H 0 1 N N N N N N -13.449 -20.132 -19.426 2.421 -5.082 0.794 H23 I65 66 I65 H24 H24 H 0 1 N N N N N N -13.186 -21.666 -18.529 0.723 -5.597 0.936 H24 I65 67 I65 H25 H25 H 0 1 N N N N N N -9.598 -11.812 -17.825 -0.475 2.575 -0.028 H25 I65 68 I65 H26 H26 H 0 1 N N N N N N -9.653 -12.826 -19.306 -1.729 2.214 -1.239 H26 I65 69 I65 H27 H27 H 0 1 N N N N N N -7.445 -13.718 -18.857 -3.439 2.265 0.622 H27 I65 70 I65 H28 H28 H 0 1 N N N N N N -7.546 -12.079 -16.277 -1.753 4.784 0.260 H28 I65 71 I65 H29 H29 H 0 1 N N N N N N -7.591 -13.871 -16.401 -3.040 4.230 -0.837 H29 I65 72 I65 H30 H30 H 0 1 N N N N N N -5.344 -13.906 -17.362 -3.887 5.959 0.725 H30 I65 73 I65 H31 H31 H 0 1 N N N N N N -5.324 -12.988 -15.818 -4.687 4.395 1.009 H31 I65 74 I65 H32 H32 H 0 1 N N N N N N -4.000 -11.903 -17.655 -2.317 5.496 2.588 H32 I65 75 I65 H33 H33 H 0 1 N N N N N N -5.321 -10.871 -17.009 -4.006 5.449 3.148 H33 I65 76 I65 H34 H34 H 0 1 N N N N N N -5.353 -12.496 -19.600 -2.716 3.532 4.047 H34 I65 77 I65 H35 H35 H 0 1 N N N N N N -5.284 -10.708 -19.444 -4.003 2.977 2.950 H35 I65 78 I65 H36 H36 H 0 1 N N N N N N -7.506 -10.695 -18.371 -1.870 1.802 2.485 H36 I65 79 I65 H37 H37 H 0 1 N N N N N N -7.584 -11.508 -19.971 -1.070 3.366 2.201 H37 I65 80 I65 H38 H38 H 0 1 N N N N N N -6.241 -22.802 -16.675 7.472 2.904 -1.365 H38 I65 81 I65 H39 H39 H 0 1 N N N N N N -6.322 -24.632 -18.338 9.448 3.847 -0.238 H39 I65 82 I65 H40 H40 H 0 1 N N N N N N -5.285 -20.539 -16.201 6.947 -0.698 -1.850 H40 I65 83 I65 H41 H41 H 0 1 N N N N N N -5.166 -19.337 -17.530 6.460 0.935 -2.362 H41 I65 84 I65 H42 H42 H 0 1 N N N N N N -12.347 -16.542 -18.482 3.985 -2.732 -0.713 H42 I65 85 I65 H43 H43 H 0 1 N N N N N N -11.677 -16.945 -20.099 2.858 -4.061 -1.079 H43 I65 86 I65 H44 H44 H 0 1 N N N N N N -13.042 -17.901 -19.428 3.065 -2.726 -2.237 H44 I65 87 I65 H45 H45 H 0 1 N N N N N N -9.304 -17.383 -19.182 2.039 -0.530 -1.822 H45 I65 88 I65 H46 H46 H 0 1 N N N N N N -9.272 -15.212 -19.034 -0.456 -0.454 -1.397 H46 I65 89 I65 H47 H47 H 0 1 N N N N N N -11.091 -13.075 -15.343 -3.744 0.788 1.314 H47 I65 90 I65 H48 H48 H 0 1 N N N N N N -16.795 -17.065 -14.967 -6.672 0.100 -4.409 H48 I65 91 I65 H49 H49 H 0 1 N N N N N N -16.295 -16.476 -16.517 -8.043 1.064 -4.301 H49 I65 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I65 C22 C20 SING N N 1 I65 C1 C DOUB Y N 2 I65 C1 C2 SING Y N 3 I65 C C5 SING Y N 4 I65 C2 C3 DOUB Y N 5 I65 O6 C20 SING N N 6 I65 O6 C18 SING N N 7 I65 C60 C18 SING N N 8 I65 C20 C23 SING N N 9 I65 C20 C21 SING N N 10 I65 C29 C30 SING N N 11 I65 C29 C28 SING N N 12 I65 C30 C25 SING N N 13 I65 O1 C7 DOUB N N 14 I65 C5 C4 DOUB Y N 15 I65 C18 C8 SING N N 16 I65 C25 C24 SING N N 17 I65 C25 C26 SING N N 18 I65 C24 C10 SING N N 19 I65 C8 C9 SING N N 20 I65 C8 N SING N N 21 I65 N1 C9 SING N N 22 I65 N1 C10 SING N N 23 I65 O3 C11 DOUB N N 24 I65 C3 C4 SING Y N 25 I65 C3 C6 SING N N 26 I65 C7 N SING N N 27 I65 C7 O SING N N 28 I65 C28 C27 SING N N 29 I65 C9 O2 DOUB N N 30 I65 C10 C11 SING N N 31 I65 C11 N2 SING N N 32 I65 C6 O SING N N 33 I65 C26 C27 SING N N 34 I65 C16 C17 SING N N 35 I65 C16 C15 SING N N 36 I65 O5 C15 DOUB N N 37 I65 C15 N3 SING N N 38 I65 N2 N3 SING N N 39 I65 C13 C12 SING N N 40 I65 C13 C14 SING N N 41 I65 N3 C12 SING N N 42 I65 N4 C14 SING N N 43 I65 C14 O4 DOUB N N 44 I65 N H1 SING N N 45 I65 C H2 SING N N 46 I65 C1 H3 SING N N 47 I65 C10 H4 SING N N 48 I65 C12 H5 SING N N 49 I65 C12 H6 SING N N 50 I65 C13 H7 SING N N 51 I65 C13 H8 SING N N 52 I65 C16 H9 SING N N 53 I65 C16 H10 SING N N 54 I65 C17 H11 SING N N 55 I65 C17 H12 SING N N 56 I65 C17 H13 SING N N 57 I65 C18 H14 SING N N 58 I65 C2 H15 SING N N 59 I65 C21 H16 SING N N 60 I65 C21 H17 SING N N 61 I65 C21 H18 SING N N 62 I65 C22 H19 SING N N 63 I65 C22 H20 SING N N 64 I65 C22 H21 SING N N 65 I65 C23 H22 SING N N 66 I65 C23 H23 SING N N 67 I65 C23 H24 SING N N 68 I65 C24 H25 SING N N 69 I65 C24 H26 SING N N 70 I65 C25 H27 SING N N 71 I65 C26 H28 SING N N 72 I65 C26 H29 SING N N 73 I65 C27 H30 SING N N 74 I65 C27 H31 SING N N 75 I65 C28 H32 SING N N 76 I65 C28 H33 SING N N 77 I65 C29 H34 SING N N 78 I65 C29 H35 SING N N 79 I65 C30 H36 SING N N 80 I65 C30 H37 SING N N 81 I65 C4 H38 SING N N 82 I65 C5 H39 SING N N 83 I65 C6 H40 SING N N 84 I65 C6 H41 SING N N 85 I65 C60 H42 SING N N 86 I65 C60 H43 SING N N 87 I65 C60 H44 SING N N 88 I65 C8 H45 SING N N 89 I65 N1 H46 SING N N 90 I65 N2 H47 SING N N 91 I65 N4 H48 SING N N 92 I65 N4 H49 SING N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I65 SMILES ACDLabs 12.01 "CCC(=O)N(CCC(N)=O)NC(=O)C(NC(=O)C(NC(=O)OCc1ccccc1)C(C)OC(C)(C)C)CC1CCCCC1" I65 InChI InChI 1.03 "InChI=1S/C31H49N5O7/c1-6-26(38)36(18-17-25(32)37)35-28(39)24(19-22-13-9-7-10-14-22)33-29(40)27(21(2)43-31(3,4)5)34-30(41)42-20-23-15-11-8-12-16-23/h8,11-12,15-16,21-22,24,27H,6-7,9-10,13-14,17-20H2,1-5H3,(H2,32,37)(H,33,40)(H,34,41)(H,35,39)/t21-,24+,27+/m1/s1" I65 InChIKey InChI 1.03 OLDUWPOLRQOLGJ-QURRFSBHSA-N I65 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N(CCC(N)=O)NC(=O)[C@H](CC1CCCCC1)NC(=O)[C@@H](NC(=O)OCc2ccccc2)[C@@H](C)OC(C)(C)C" I65 SMILES CACTVS 3.385 "CCC(=O)N(CCC(N)=O)NC(=O)[CH](CC1CCCCC1)NC(=O)[CH](NC(=O)OCc2ccccc2)[CH](C)OC(C)(C)C" I65 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(CCC(=O)N)NC(=O)[C@H](CC1CCCCC1)NC(=O)[C@H]([C@@H](C)OC(C)(C)C)NC(=O)OCc2ccccc2" I65 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(CCC(=O)N)NC(=O)C(CC1CCCCC1)NC(=O)C(C(C)OC(C)(C)C)NC(=O)OCc2ccccc2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier I65 "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [(2S,3R)-1-({(2S)-1-[2-(3-amino-3-oxopropyl)-2-propanoylhydrazinyl]-3-cyclohexyl-1-oxopropan-2-yl}amino)-3-tert-butoxy-1-oxobutan-2-yl]carbamate (non-preferred name)" I65 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{R})-1-[[(2~{S})-1-[2-(3-azanyl-3-oxidanylidene-propyl)-2-propanoyl-hydrazinyl]-3-cyclohexyl-1-oxidanylidene-propan-2-yl]amino]-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I65 "Create component" 2021-10-13 RCSB I65 "Initial release" 2023-01-25 RCSB I65 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id I65 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C17 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #