data_I6I # _chem_comp.id I6I _chem_comp.name "N-{4-[4-(2-amino-4-oxo-1,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-D-gamma-glutamyl-L-gamma-glutamyl-D-glutamic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H38 F N7 O12" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-27 _chem_comp.pdbx_modified_date 2024-02-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 731.682 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I6I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TLC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I6I C02 C1 C 0 1 N N N N N N -39.106 63.609 3.618 -10.894 -0.393 -0.807 C02 I6I 1 I6I C04 C2 C 0 1 N N N N N N -36.937 64.834 3.499 -8.678 0.223 -1.106 C04 I6I 2 I6I C05 C3 C 0 1 Y N N N N N -37.643 64.580 7.128 -8.561 -2.476 1.248 C05 I6I 3 I6I C06 C4 C 0 1 Y N N N N N -36.432 65.267 7.130 -7.238 -2.214 1.161 C06 I6I 4 I6I C08 C5 C 0 1 Y N N N N N -36.907 64.912 5.032 -8.264 -0.779 -0.192 C08 I6I 5 I6I C09 C6 C 0 1 Y N N N N N -37.940 64.357 5.772 -9.233 -1.580 0.400 C09 I6I 6 I6I C12 C7 C 0 1 Y N N N N N -38.425 72.436 3.024 -0.041 4.114 0.258 C12 I6I 7 I6I C14 C8 C 0 1 Y N N N N N -38.736 71.094 3.231 -0.122 3.127 1.242 C14 I6I 8 I6I C15 C9 C 0 1 Y N N N N N -36.302 72.105 4.099 -2.426 4.001 -0.038 C15 I6I 9 I6I C16 C10 C 0 1 Y N N N N N -37.823 70.255 3.868 -1.348 2.590 1.577 C16 I6I 10 I6I C17 C11 C 0 1 N N N N N N -39.427 73.392 2.317 1.269 4.688 -0.110 C17 I6I 11 I6I N19 N1 N 0 1 N N N N N N -40.667 73.802 3.006 2.389 4.261 0.505 N19 I6I 12 I6I C20 C12 C 0 1 N N R N N N -41.605 74.719 2.323 3.689 4.831 0.141 C20 I6I 13 I6I C21 C13 C 0 1 N N N N N N -41.789 75.989 3.198 4.796 3.826 0.465 C21 I6I 14 I6I O24 O1 O 0 1 N N N N N N -41.577 78.738 2.910 6.550 1.857 0.751 O24 I6I 15 I6I C26 C14 C 0 1 N N N N N N -42.927 74.005 2.067 3.918 6.099 0.922 C26 I6I 16 I6I C29 C15 C 0 1 N N N N N N -34.796 66.133 5.502 -5.744 -0.610 -0.071 C29 I6I 17 I6I C30 C16 C 0 1 N N N N N N -34.857 67.607 5.947 -5.465 0.610 0.809 C30 I6I 18 I6I C31 C17 C 0 1 N N N N N N -36.010 68.414 5.311 -4.110 1.212 0.431 C31 I6I 19 I6I C32 C18 C 0 1 N N N N N N -35.564 69.867 5.020 -3.831 2.432 1.311 C32 I6I 20 I6I C33 C19 C 0 1 Y N N N N N -36.606 70.762 4.307 -2.497 3.025 0.939 C33 I6I 21 I6I C34 C20 C 0 1 N N S N N N -39.346 80.487 2.803 6.845 -0.539 -0.449 C34 I6I 22 I6I C13 C21 C 0 1 Y N N N N N -37.212 72.940 3.460 -1.204 4.549 -0.384 C13 I6I 23 I6I C22 C22 C 0 1 N N N N N N -40.443 76.721 3.449 4.635 2.587 -0.419 C22 I6I 24 I6I C23 C23 C 0 1 N N N N N N -40.526 78.230 3.132 5.726 1.597 -0.099 C23 I6I 25 I6I C35 C24 C 0 1 N N N N N N -39.277 81.298 4.124 6.377 -1.949 -0.816 C35 I6I 26 I6I C36 C25 C 0 1 N N N N N N -40.451 82.295 4.284 5.198 -2.343 0.075 C36 I6I 27 I6I C37 C26 C 0 1 N N N N N N -40.750 82.594 5.779 4.738 -3.732 -0.286 C37 I6I 28 I6I C40 C27 C 0 1 N N N N N N -38.207 80.837 1.850 8.081 -0.197 -1.240 C40 I6I 29 I6I C43 C28 C 0 1 N N R N N N -42.931 83.793 5.166 3.257 -5.642 0.021 C43 I6I 30 I6I C44 C29 C 0 1 N N N N N N -43.108 85.311 5.286 1.786 -5.810 0.409 C44 I6I 31 I6I C45 C30 C 0 1 N N N N N N -43.848 85.915 4.079 0.926 -4.865 -0.433 C45 I6I 32 I6I C46 C31 C 0 1 N N N N N N -44.709 87.126 4.458 -0.522 -5.030 -0.051 C46 I6I 33 I6I C49 C32 C 0 1 N N N N N N -44.254 83.057 5.358 4.090 -6.657 0.760 C49 I6I 34 I6I F24 F1 F 0 1 N N N N N N -36.913 74.262 3.259 -1.136 5.504 -1.337 F24 I6I 35 I6I N01 N2 N 0 1 N N N N N N -39.077 63.685 5.083 -10.560 -1.371 0.077 N01 I6I 36 I6I N03 N3 N 0 1 N N N N N N -38.031 64.188 2.838 -9.984 0.371 -1.373 N03 I6I 37 I6I N07 N4 N 0 1 Y N N N N N -36.024 65.446 5.882 -7.041 -1.186 0.291 N07 I6I 38 I6I N11 N5 N 0 1 N N N N N N -40.212 62.958 2.939 -12.213 -0.201 -1.122 N11 I6I 39 I6I N25 N6 N 0 1 N N N N N N -39.286 79.039 3.107 5.785 0.424 -0.759 N25 I6I 40 I6I N39 N7 N 0 1 N N N N N N -41.964 83.324 6.173 3.704 -4.292 0.372 N39 I6I 41 I6I O10 O2 O 0 1 N N N N N N -36.066 65.301 2.852 -7.853 0.945 -1.644 O10 I6I 42 I6I O18 O3 O 0 1 N N N N N N -39.193 73.801 1.228 1.337 5.547 -0.967 O18 I6I 43 I6I O27 O4 O 0 1 N N N N N N -43.442 73.291 2.972 5.050 6.798 0.749 O27 I6I 44 I6I O28 O5 O 0 1 N N N N N N -43.504 74.131 0.955 3.081 6.487 1.702 O28 I6I 45 I6I O38 O6 O 0 1 N N N N N N -39.988 82.227 6.614 5.298 -4.345 -1.170 O38 I6I 46 I6I O41 O7 O 0 1 N N N N N N -37.245 80.038 1.701 9.186 -0.948 -1.116 O41 I6I 47 I6I O42 O8 O 0 1 N N N N N N -38.230 81.918 1.211 8.077 0.753 -1.987 O42 I6I 48 I6I O47 O9 O 0 1 N N N N N N -45.950 87.106 4.236 -0.834 -5.821 0.808 O47 I6I 49 I6I O48 O10 O 0 1 N N N N N N -44.181 88.140 4.991 -1.466 -4.298 -0.663 O48 I6I 50 I6I O50 O11 O 0 1 N N N N N N -45.069 83.451 6.233 3.858 -7.968 0.592 O50 I6I 51 I6I O51 O12 O 0 1 N N N N N N -44.532 82.055 4.644 4.968 -6.290 1.505 O51 I6I 52 I6I H1 H1 H 0 1 N N N N N N -38.229 64.282 7.985 -9.020 -3.237 1.860 H1 I6I 53 I6I H2 H2 H 0 1 N N N N N N -35.907 65.602 8.012 -6.461 -2.737 1.698 H2 I6I 54 I6I H3 H3 H 0 1 N N N N N N -39.686 70.703 2.897 0.772 2.785 1.741 H3 I6I 55 I6I H4 H4 H 0 1 N N N N N N -35.355 72.500 4.436 -3.326 4.335 -0.532 H4 I6I 56 I6I H5 H5 H 0 1 N N N N N N -38.061 69.213 4.020 -1.411 1.827 2.339 H5 I6I 57 I6I H6 H6 H 0 1 N N N N N N -40.870 73.463 3.925 2.336 3.575 1.190 H6 I6I 58 I6I H7 H7 H 0 1 N N N N N N -41.176 75.024 1.357 3.701 5.054 -0.926 H7 I6I 59 I6I H8 H8 H 0 1 N N N N N N -42.477 76.677 2.685 5.768 4.283 0.277 H8 I6I 60 I6I H9 H9 H 0 1 N N N N N N -42.219 75.694 4.167 4.727 3.536 1.513 H9 I6I 61 I6I H10 H10 H 0 1 N N N N N N -33.939 65.642 5.986 -5.760 -0.307 -1.118 H10 I6I 62 I6I H11 H11 H 0 1 N N N N N N -34.676 66.087 4.410 -4.961 -1.354 0.080 H11 I6I 63 I6I H12 H12 H 0 1 N N N N N N -33.907 68.089 5.674 -6.248 1.354 0.658 H12 I6I 64 I6I H13 H13 H 0 1 N N N N N N -34.980 67.632 7.040 -5.449 0.307 1.856 H13 I6I 65 I6I H14 H14 H 0 1 N N N N N N -36.864 68.430 6.004 -3.327 0.469 0.582 H14 I6I 66 I6I H15 H15 H 0 1 N N N N N N -36.311 67.933 4.369 -4.126 1.515 -0.616 H15 I6I 67 I6I H16 H16 H 0 1 N N N N N N -34.666 69.824 4.386 -4.614 3.176 1.160 H16 I6I 68 I6I H17 H17 H 0 1 N N N N N N -35.312 70.341 5.980 -3.815 2.129 2.358 H17 I6I 69 I6I H18 H18 H 0 1 N N N N N N -40.301 80.714 2.307 7.072 -0.497 0.616 H18 I6I 70 I6I H19 H19 H 0 1 N N N N N N -39.670 76.268 2.811 3.663 2.131 -0.231 H19 I6I 71 I6I H20 H20 H 0 1 N N N N N N -40.165 76.597 4.506 4.703 2.878 -1.467 H20 I6I 72 I6I H21 H21 H 0 1 N N N N N N -39.297 80.594 4.969 6.065 -1.967 -1.860 H21 I6I 73 I6I H22 H22 H 0 1 N N N N N N -38.333 81.863 4.140 7.196 -2.653 -0.669 H22 I6I 74 I6I H23 H23 H 0 1 N N N N N N -40.191 83.236 3.777 5.510 -2.325 1.120 H23 I6I 75 I6I H24 H24 H 0 1 N N N N N N -41.350 81.864 3.820 4.379 -1.639 -0.072 H24 I6I 76 I6I H25 H25 H 0 1 N N N N N N -42.547 83.565 4.161 3.368 -5.794 -1.053 H25 I6I 77 I6I H26 H26 H 0 1 N N N N N N -42.114 85.777 5.360 1.478 -6.839 0.230 H26 I6I 78 I6I H27 H27 H 0 1 N N N N N N -43.684 85.528 6.198 1.660 -5.571 1.465 H27 I6I 79 I6I H28 H28 H 0 1 N N N N N N -44.499 85.143 3.643 1.234 -3.836 -0.254 H28 I6I 80 I6I H29 H29 H 0 1 N N N N N N -43.104 86.232 3.333 1.052 -5.104 -1.489 H29 I6I 81 I6I H30 H30 H 0 1 N N N N N N -39.821 63.286 5.619 -11.251 -1.919 0.480 H30 I6I 82 I6I H31 H31 H 0 1 N N N N N N -40.228 62.912 1.940 -12.895 -0.759 -0.715 H31 I6I 83 I6I H32 H32 H 0 1 N N N N N N -40.958 62.556 3.470 -12.466 0.492 -1.751 H32 I6I 84 I6I H33 H33 H 0 1 N N N N N N -38.405 78.606 3.296 5.125 0.216 -1.439 H33 I6I 85 I6I H34 H34 H 0 1 N N N N N N -42.136 83.505 7.141 3.257 -3.802 1.079 H34 I6I 86 I6I H35 H35 H 0 1 N N N N N N -44.259 72.921 2.658 5.152 7.605 1.272 H35 I6I 87 I6I H36 H36 H 0 1 N N N N N N -36.627 80.399 1.076 9.954 -0.690 -1.643 H36 I6I 88 I6I H37 H37 H 0 1 N N N N N N -44.850 88.793 5.161 -2.381 -4.439 -0.384 H37 I6I 89 I6I H38 H38 H 0 1 N N N N N N -45.836 82.891 6.227 4.418 -8.580 1.088 H38 I6I 90 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I6I O28 C26 DOUB N N 1 I6I O42 C40 DOUB N N 2 I6I O18 C17 DOUB N N 3 I6I O41 C40 SING N N 4 I6I C40 C34 SING N N 5 I6I C26 C20 SING N N 6 I6I C26 O27 SING N N 7 I6I C17 N19 SING N N 8 I6I C17 C12 SING N N 9 I6I C20 N19 SING N N 10 I6I C20 C21 SING N N 11 I6I C34 N25 SING N N 12 I6I C34 C35 SING N N 13 I6I N03 C04 SING N N 14 I6I N03 C02 DOUB N N 15 I6I O10 C04 DOUB N N 16 I6I O24 C23 DOUB N N 17 I6I N11 C02 SING N N 18 I6I C12 C14 DOUB Y N 19 I6I C12 C13 SING Y N 20 I6I N25 C23 SING N N 21 I6I C23 C22 SING N N 22 I6I C21 C22 SING N N 23 I6I C14 C16 SING Y N 24 I6I F24 C13 SING N N 25 I6I C13 C15 DOUB Y N 26 I6I C04 C08 SING N N 27 I6I C02 N01 SING N N 28 I6I C16 C33 DOUB Y N 29 I6I C45 C46 SING N N 30 I6I C45 C44 SING N N 31 I6I C15 C33 SING Y N 32 I6I C35 C36 SING N N 33 I6I O47 C46 DOUB N N 34 I6I C36 C37 SING N N 35 I6I C33 C32 SING N N 36 I6I C46 O48 SING N N 37 I6I O51 C49 DOUB N N 38 I6I C32 C31 SING N N 39 I6I C08 C09 DOUB Y N 40 I6I C08 N07 SING Y N 41 I6I N01 C09 SING N N 42 I6I C43 C44 SING N N 43 I6I C43 C49 SING N N 44 I6I C43 N39 SING N N 45 I6I C31 C30 SING N N 46 I6I C49 O50 SING N N 47 I6I C29 N07 SING N N 48 I6I C29 C30 SING N N 49 I6I C09 C05 SING Y N 50 I6I C37 N39 SING N N 51 I6I C37 O38 DOUB N N 52 I6I N07 C06 SING Y N 53 I6I C05 C06 DOUB Y N 54 I6I C05 H1 SING N N 55 I6I C06 H2 SING N N 56 I6I C14 H3 SING N N 57 I6I C15 H4 SING N N 58 I6I C16 H5 SING N N 59 I6I N19 H6 SING N N 60 I6I C20 H7 SING N N 61 I6I C21 H8 SING N N 62 I6I C21 H9 SING N N 63 I6I C29 H10 SING N N 64 I6I C29 H11 SING N N 65 I6I C30 H12 SING N N 66 I6I C30 H13 SING N N 67 I6I C31 H14 SING N N 68 I6I C31 H15 SING N N 69 I6I C32 H16 SING N N 70 I6I C32 H17 SING N N 71 I6I C34 H18 SING N N 72 I6I C22 H19 SING N N 73 I6I C22 H20 SING N N 74 I6I C35 H21 SING N N 75 I6I C35 H22 SING N N 76 I6I C36 H23 SING N N 77 I6I C36 H24 SING N N 78 I6I C43 H25 SING N N 79 I6I C44 H26 SING N N 80 I6I C44 H27 SING N N 81 I6I C45 H28 SING N N 82 I6I C45 H29 SING N N 83 I6I N01 H30 SING N N 84 I6I N11 H31 SING N N 85 I6I N11 H32 SING N N 86 I6I N25 H33 SING N N 87 I6I N39 H34 SING N N 88 I6I O27 H35 SING N N 89 I6I O41 H36 SING N N 90 I6I O48 H37 SING N N 91 I6I O50 H38 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I6I SMILES ACDLabs 12.01 "O=C(O)C(CCC(=O)O)NC(=O)CCC(NC(=O)CCC(NC(=O)c1ccc(cc1F)CCCCn1ccc2NC(N)=NC(=O)c21)C(=O)O)C(=O)O" I6I InChI InChI 1.06 "InChI=1S/C32H38FN7O12/c33-18-15-16(3-1-2-13-40-14-12-19-26(40)28(46)39-32(34)38-19)4-5-17(18)27(45)37-22(31(51)52)7-10-24(42)35-20(29(47)48)6-9-23(41)36-21(30(49)50)8-11-25(43)44/h4-5,12,14-15,20-22H,1-3,6-11,13H2,(H,35,42)(H,36,41)(H,37,45)(H,43,44)(H,47,48)(H,49,50)(H,51,52)(H3,34,38,39,46)/t20-,21+,22+/m0/s1" I6I InChIKey InChI 1.06 CLRLOXIKNFTIBU-BHDDXSALSA-N I6I SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2n(CCCCc3ccc(c(F)c3)C(=O)N[C@H](CCC(=O)N[C@@H](CCC(=O)N[C@H](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)ccc2N1" I6I SMILES CACTVS 3.385 "NC1=NC(=O)c2n(CCCCc3ccc(c(F)c3)C(=O)N[CH](CCC(=O)N[CH](CCC(=O)N[CH](CCC(O)=O)C(O)=O)C(O)=O)C(O)=O)ccc2N1" I6I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCn2ccc3c2C(=O)N=C(N3)N)F)C(=O)N[C@H](CCC(=O)N[C@@H](CCC(=O)N[C@H](CCC(=O)O)C(=O)O)C(=O)O)C(=O)O" I6I SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1CCCCn2ccc3c2C(=O)N=C(N3)N)F)C(=O)NC(CCC(=O)NC(CCC(=O)NC(CCC(=O)O)C(=O)O)C(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier I6I "SYSTEMATIC NAME" ACDLabs 12.01 "N-{4-[4-(2-amino-4-oxo-1,4-dihydro-5H-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluorobenzoyl}-D-gamma-glutamyl-L-gamma-glutamyl-D-glutamic acid" I6I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[[(4~{S})-4-[[(4~{R})-4-[[4-[4-(2-azanyl-4-oxidanylidene-1~{H}-pyrrolo[3,2-d]pyrimidin-5-yl)butyl]-2-fluoranyl-phenyl]carbonylamino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I6I "Create component" 2023-07-27 RCSB I6I "Initial release" 2024-02-21 RCSB #