data_I6L # _chem_comp.id I6L _chem_comp.name "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)pentyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H30 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-10 _chem_comp.pdbx_modified_date 2023-03-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 406.521 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I6L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XUB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I6L C24 C1 C 0 1 N N N 48.847 5.022 114.476 -1.535 -4.360 1.649 C24 I6L 1 I6L C27 C2 C 0 1 N N N 53.405 5.194 118.855 2.922 -2.034 -1.791 C27 I6L 2 I6L C29 C3 C 0 1 N N N 58.543 6.452 116.741 5.929 3.276 1.303 C29 I6L 3 I6L C30 C4 C 0 1 N N N 59.749 8.106 118.103 5.359 0.927 1.920 C30 I6L 4 I6L C20 C5 C 0 1 N N N 58.096 6.595 119.213 5.752 1.528 -0.471 C20 I6L 5 I6L C16 C6 C 0 1 Y N N 56.022 7.819 117.710 2.974 1.156 0.127 C16 I6L 6 I6L C22 C7 C 0 1 N N N 49.171 5.882 116.831 -2.409 -2.204 0.736 C22 I6L 7 I6L C21 C8 C 0 1 N N N 56.721 5.939 119.263 5.085 0.208 -0.825 C21 I6L 8 I6L C18 C9 C 0 1 N N N 57.372 8.473 117.619 3.688 2.342 0.724 C18 I6L 9 I6L C19 C10 C 0 1 N N N 58.416 7.390 117.934 5.178 2.018 0.863 C19 I6L 10 I6L C13 C11 C 0 1 Y N N 53.785 7.431 117.359 1.472 -0.340 -0.514 C13 I6L 11 I6L C8 C12 C 0 1 Y N N 49.473 8.339 116.872 -3.341 -0.131 -0.255 C8 I6L 12 I6L C12 C13 C 0 1 N N N 52.438 7.694 116.769 0.179 -1.013 -0.695 C12 I6L 13 I6L C10 C14 C 0 1 N N S 50.085 7.050 116.473 -2.230 -1.144 -0.352 C10 I6L 14 I6L N7 N1 N 0 1 Y N N 49.554 8.889 118.101 -3.162 1.212 -0.130 N7 I6L 15 I6L C5 C15 C 0 1 Y N N 48.351 10.214 116.733 -5.334 0.731 -0.169 C5 I6L 16 I6L C3 C16 C 0 1 Y N N 47.378 12.299 117.414 -7.137 2.295 -0.017 C3 I6L 17 I6L C4 C17 C 0 1 Y N N 47.609 11.345 116.430 -6.704 1.006 -0.139 C4 I6L 18 I6L C1 C18 C 0 1 Y N N 48.646 11.027 119.047 -4.874 3.093 0.056 C1 I6L 19 I6L C14 C19 C 0 1 Y N N 54.214 6.325 118.275 2.675 -0.781 -0.991 C14 I6L 20 I6L C15 C20 C 0 1 Y N N 55.662 6.620 118.472 3.633 0.159 -0.592 C15 I6L 21 I6L C2 C21 C 0 1 Y N N 47.889 12.141 118.700 -6.230 3.340 0.089 C2 I6L 22 I6L C23 C22 C 0 1 N N N 49.376 4.715 115.872 -1.355 -3.299 0.560 C23 I6L 23 I6L C25 C23 C 0 1 N N N 47.349 5.234 114.498 -0.481 -5.455 1.472 C25 I6L 24 I6L C6 C24 C 0 1 Y N N 48.889 10.049 118.096 -4.415 1.789 -0.072 C6 I6L 25 I6L N11 N2 N 0 1 N N N 51.420 6.870 117.033 -0.940 -0.473 -0.172 N11 I6L 26 I6L N17 N3 N 0 1 Y N N 54.867 8.353 116.998 1.678 0.845 0.166 N17 I6L 27 I6L N9 N4 N 0 1 Y N N 48.745 9.130 116.040 -4.611 -0.412 -0.283 N9 I6L 28 I6L O26 O1 O 0 1 N N N 52.317 8.667 116.039 0.118 -2.057 -1.316 O26 I6L 29 I6L O28 O2 O 0 1 N N N 56.509 4.934 119.930 5.705 -0.737 -1.268 O28 I6L 30 I6L H1 H1 H 0 1 N N N 49.081 4.179 113.809 -1.418 -3.897 2.629 H1 I6L 31 I6L H2 H2 H 0 1 N N N 49.334 5.934 114.099 -2.530 -4.797 1.569 H2 I6L 32 I6L H3 H3 H 0 1 N N N 53.441 4.330 118.175 2.830 -1.812 -2.854 H3 I6L 33 I6L H4 H4 H 0 1 N N N 53.822 4.909 119.832 3.926 -2.405 -1.584 H4 I6L 34 I6L H5 H5 H 0 1 N N N 52.361 5.517 118.982 2.190 -2.793 -1.513 H5 I6L 35 I6L H6 H6 H 0 1 N N N 59.290 5.675 116.963 5.537 3.616 2.262 H6 I6L 36 I6L H7 H7 H 0 1 N N N 57.570 5.979 116.541 6.990 3.049 1.403 H7 I6L 37 I6L H8 H8 H 0 1 N N N 58.861 7.024 115.857 5.793 4.060 0.557 H8 I6L 38 I6L H9 H9 H 0 1 N N N 59.690 8.794 118.960 4.960 1.276 2.873 H9 I6L 39 I6L H10 H10 H 0 1 N N N 60.543 7.366 118.281 4.825 0.029 1.610 H10 I6L 40 I6L H11 H11 H 0 1 N N N 59.977 8.676 117.190 6.419 0.700 2.030 H11 I6L 41 I6L H12 H12 H 0 1 N N N 58.852 5.802 119.315 6.828 1.382 -0.375 H12 I6L 42 I6L H13 H13 H 0 1 N N N 58.171 7.285 120.066 5.549 2.263 -1.250 H13 I6L 43 I6L H14 H14 H 0 1 N N N 48.124 6.214 116.775 -2.293 -1.742 1.717 H14 I6L 44 I6L H15 H15 H 0 1 N N N 49.396 5.550 117.855 -3.404 -2.642 0.657 H15 I6L 45 I6L H16 H16 H 0 1 N N N 57.532 8.870 116.606 3.563 3.207 0.072 H16 I6L 46 I6L H17 H17 H 0 1 N N N 57.445 9.292 118.349 3.270 2.563 1.706 H17 I6L 47 I6L H18 H18 H 0 1 N N N 50.181 7.057 115.377 -2.258 -1.621 -1.332 H18 I6L 48 I6L H19 H19 H 0 1 N N N 50.032 8.495 118.886 -2.312 1.678 -0.088 H19 I6L 49 I6L H20 H20 H 0 1 N N N 46.794 13.176 117.178 -8.197 2.503 0.010 H20 I6L 50 I6L H21 H21 H 0 1 N N N 47.213 11.484 115.435 -7.419 0.199 -0.212 H21 I6L 51 I6L H22 H22 H 0 1 N N N 49.040 10.925 120.047 -4.172 3.911 0.130 H22 I6L 52 I6L H23 H23 H 0 1 N N N 47.693 12.900 119.443 -6.588 4.354 0.185 H23 I6L 53 I6L H24 H24 H 0 1 N N N 48.847 3.835 116.266 -0.360 -2.862 0.640 H24 I6L 54 I6L H25 H25 H 0 1 N N N 50.452 4.496 115.804 -1.472 -3.762 -0.420 H25 I6L 55 I6L H26 H26 H 0 1 N N N 46.994 5.453 113.480 0.514 -5.017 1.552 H26 I6L 56 I6L H27 H27 H 0 1 N N N 46.855 4.324 114.870 -0.609 -6.210 2.248 H27 I6L 57 I6L H28 H28 H 0 1 N N N 47.108 6.079 115.160 -0.597 -5.917 0.492 H28 I6L 58 I6L H29 H29 H 0 1 N N N 51.581 6.094 117.643 -0.891 0.360 0.323 H29 I6L 59 I6L H30 H30 H 0 1 N N N 54.823 9.157 116.405 0.988 1.369 0.601 H30 I6L 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I6L C24 C25 SING N N 1 I6L C24 C23 SING N N 2 I6L C23 C22 SING N N 3 I6L O26 C12 DOUB N N 4 I6L N9 C5 SING Y N 5 I6L N9 C8 DOUB Y N 6 I6L C4 C5 SING Y N 7 I6L C4 C3 DOUB Y N 8 I6L C10 C22 SING N N 9 I6L C10 C8 SING N N 10 I6L C10 N11 SING N N 11 I6L C5 C6 DOUB Y N 12 I6L C29 C19 SING N N 13 I6L C12 N11 SING N N 14 I6L C12 C13 SING N N 15 I6L C8 N7 SING Y N 16 I6L N17 C13 SING Y N 17 I6L N17 C16 SING Y N 18 I6L C13 C14 DOUB Y N 19 I6L C3 C2 SING Y N 20 I6L C18 C16 SING N N 21 I6L C18 C19 SING N N 22 I6L C16 C15 DOUB Y N 23 I6L C19 C30 SING N N 24 I6L C19 C20 SING N N 25 I6L C6 N7 SING Y N 26 I6L C6 C1 SING Y N 27 I6L C14 C15 SING Y N 28 I6L C14 C27 SING N N 29 I6L C15 C21 SING N N 30 I6L C2 C1 DOUB Y N 31 I6L C20 C21 SING N N 32 I6L C21 O28 DOUB N N 33 I6L C24 H1 SING N N 34 I6L C24 H2 SING N N 35 I6L C27 H3 SING N N 36 I6L C27 H4 SING N N 37 I6L C27 H5 SING N N 38 I6L C29 H6 SING N N 39 I6L C29 H7 SING N N 40 I6L C29 H8 SING N N 41 I6L C30 H9 SING N N 42 I6L C30 H10 SING N N 43 I6L C30 H11 SING N N 44 I6L C20 H12 SING N N 45 I6L C20 H13 SING N N 46 I6L C22 H14 SING N N 47 I6L C22 H15 SING N N 48 I6L C18 H16 SING N N 49 I6L C18 H17 SING N N 50 I6L C10 H18 SING N N 51 I6L N7 H19 SING N N 52 I6L C3 H20 SING N N 53 I6L C4 H21 SING N N 54 I6L C1 H22 SING N N 55 I6L C2 H23 SING N N 56 I6L C23 H24 SING N N 57 I6L C23 H25 SING N N 58 I6L C25 H26 SING N N 59 I6L C25 H27 SING N N 60 I6L C25 H28 SING N N 61 I6L N11 H29 SING N N 62 I6L N17 H30 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I6L InChI InChI 1.03 "InChI=1S/C24H30N4O2/c1-5-6-9-17(22-26-15-10-7-8-11-16(15)27-22)28-23(30)21-14(2)20-18(25-21)12-24(3,4)13-19(20)29/h7-8,10-11,17,25H,5-6,9,12-13H2,1-4H3,(H,26,27)(H,28,30)/t17-/m0/s1" I6L InChIKey InChI 1.03 MLILCMJFXVXZFP-KRWDZBQOSA-N I6L SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3" I6L SMILES CACTVS 3.385 "CCCC[CH](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3" I6L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](c1[nH]c2ccccc2n1)NC(=O)c3c(c4c([nH]3)CC(CC4=O)(C)C)C" I6L SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(c1[nH]c2ccccc2n1)NC(=O)c3c(c4c([nH]3)CC(CC4=O)(C)C)C" # _pdbx_chem_comp_identifier.comp_id I6L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)pentyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I6L "Create component" 2022-06-10 PDBJ I6L "Initial release" 2023-03-29 RCSB #