data_I6O # _chem_comp.id I6O _chem_comp.name "1-(cyclohexylmethyl)-4-phenyl-2-[(2S)-pyrrolidin-2-yl]-1H-imidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N3" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 309.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I6O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TLV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I6O N N1 N 0 1 N N N Y Y N 25.271 0.733 -17.012 0.904 -2.736 1.254 N5 I6O 1 I6O CD C1 C 0 1 N N N N N N 23.874 0.298 -16.855 1.438 -4.113 1.180 C22 I6O 2 I6O CG C2 C 0 1 N N N N N N 23.960 -1.196 -17.047 1.283 -4.580 -0.280 C23 I6O 3 I6O CB C3 C 0 1 N N N N N N 25.313 -1.529 -16.469 0.662 -3.376 -1.025 C24 I6O 4 I6O CA C4 C 0 1 N N S N N N 26.209 -0.407 -17.017 1.034 -2.177 -0.116 C25 I6O 5 I6O C C5 C 0 1 Y N N N N N 26.751 -0.661 -18.386 0.069 -1.037 -0.319 C26 I6O 6 I6O N6 N2 N 0 1 Y N N N N N 26.095 -0.382 -19.539 -1.181 -1.029 0.048 N6 I6O 7 I6O C27 C6 C 0 1 Y N N N N N 26.947 -0.728 -20.582 -1.736 0.151 -0.294 C27 I6O 8 I6O C28 C7 C 0 1 Y N N N N N 26.564 -0.512 -21.981 -3.143 0.559 -0.057 C28 I6O 9 I6O C29 C8 C 0 1 Y N N N N N 27.292 -1.097 -23.012 -4.025 -0.312 0.580 C29 I6O 10 I6O C30 C9 C 0 1 Y N N N N N 26.950 -0.873 -24.336 -5.333 0.072 0.798 C30 I6O 11 I6O C31 C10 C 0 1 Y N N N N N 25.915 -0.022 -24.644 -5.768 1.319 0.387 C31 I6O 12 I6O C32 C11 C 0 1 Y N N N N N 25.222 0.609 -23.635 -4.896 2.188 -0.245 C32 I6O 13 I6O C33 C12 C 0 1 Y N N N N N 25.549 0.379 -22.311 -3.585 1.816 -0.464 C33 I6O 14 I6O C34 C13 C 0 1 Y N N N N N 28.116 -1.186 -20.058 -0.776 0.899 -0.899 C34 I6O 15 I6O N7 N3 N 0 1 Y N N N N N 28.016 -1.100 -18.695 0.363 0.144 -0.906 N7 I6O 16 I6O C35 C14 C 0 1 N N N N N N 29.066 -1.551 -17.777 1.661 0.538 -1.459 C35 I6O 17 I6O C36 C15 C 0 1 N N N N N N 30.051 -0.464 -17.375 2.577 1.005 -0.325 C36 I6O 18 I6O C37 C16 C 0 1 N N N N N N 31.280 -1.058 -16.681 3.971 1.298 -0.883 C37 I6O 19 I6O C38 C17 C 0 1 N N N N N N 32.314 0.001 -16.290 4.887 1.764 0.250 C38 I6O 20 I6O C39 C18 C 0 1 N N N N N N 32.722 0.856 -17.478 4.312 3.034 0.880 C39 I6O 21 I6O C40 C19 C 0 1 N N N N N N 31.506 1.483 -18.141 2.918 2.741 1.438 C40 I6O 22 I6O C41 C20 C 0 1 N N N N N N 30.486 0.418 -18.550 2.003 2.275 0.305 C41 I6O 23 I6O H1 H1 H 0 1 N Y N Y Y N 25.507 1.341 -16.254 1.422 -2.183 1.920 H1 I6O 24 I6O H3 H3 H 0 1 N N N N N N 23.229 0.758 -17.618 2.491 -4.119 1.462 H3 I6O 25 I6O H4 H4 H 0 1 N N N N N N 23.493 0.547 -15.854 0.873 -4.767 1.844 H4 I6O 26 I6O H5 H5 H 0 1 N N N N N N 23.157 -1.713 -16.500 2.257 -4.826 -0.704 H5 I6O 27 I6O H6 H6 H 0 1 N N N N N N 23.908 -1.462 -18.113 0.618 -5.442 -0.333 H6 I6O 28 I6O H7 H7 H 0 1 N N N N N N 25.288 -1.513 -15.369 1.107 -3.263 -2.013 H7 I6O 29 I6O H8 H8 H 0 1 N N N N N N 25.658 -2.515 -16.814 -0.420 -3.486 -1.100 H8 I6O 30 I6O H9 H9 H 0 1 N N N N N N 27.035 -0.223 -16.314 2.058 -1.855 -0.305 H9 I6O 31 I6O H10 H10 H 0 1 N N N N N N 28.133 -1.733 -22.778 -3.687 -1.286 0.901 H10 I6O 32 I6O H11 H11 H 0 1 N N N N N N 27.496 -1.367 -25.126 -6.018 -0.602 1.290 H11 I6O 33 I6O H12 H12 H 0 1 N N N N N N 25.646 0.151 -25.675 -6.792 1.616 0.559 H12 I6O 34 I6O H13 H13 H 0 1 N N N N N N 24.418 1.288 -23.879 -5.241 3.160 -0.565 H13 I6O 35 I6O H14 H14 H 0 1 N N N N N N 25.012 0.895 -21.528 -2.905 2.495 -0.957 H14 I6O 36 I6O H15 H15 H 0 1 N N N N N N 28.967 -1.550 -20.615 -0.890 1.898 -1.294 H15 I6O 37 I6O H16 H16 H 0 1 N N N N N N 28.585 -1.936 -16.865 2.115 -0.313 -1.965 H16 I6O 38 I6O H17 H17 H 0 1 N N N N N N 29.627 -2.361 -18.266 1.521 1.352 -2.170 H17 I6O 39 I6O H18 H18 H 0 1 N N N N N N 29.545 0.187 -16.646 2.645 0.223 0.432 H18 I6O 40 I6O H19 H19 H 0 1 N N N N N N 30.951 -1.580 -15.770 4.380 0.392 -1.332 H19 I6O 41 I6O H20 H20 H 0 1 N N N N N N 31.755 -1.777 -17.364 3.903 2.079 -1.640 H20 I6O 42 I6O H21 H21 H 0 1 N N N N N N 33.206 -0.503 -15.891 4.955 0.982 1.007 H21 I6O 43 I6O H22 H22 H 0 1 N N N N N N 31.882 0.651 -15.515 5.880 1.972 -0.147 H22 I6O 44 I6O H23 H23 H 0 1 N N N N N N 33.247 0.226 -18.211 4.965 3.366 1.688 H23 I6O 45 I6O H24 H24 H 0 1 N N N N N N 33.395 1.654 -17.132 4.244 3.816 0.124 H24 I6O 46 I6O H25 H25 H 0 1 N N N N N N 31.830 2.032 -19.037 2.987 1.960 2.195 H25 I6O 47 I6O H26 H26 H 0 1 N N N N N N 31.032 2.181 -17.435 2.509 3.647 1.887 H26 I6O 48 I6O H27 H27 H 0 1 N N N N N N 29.598 0.920 -18.961 1.934 3.057 -0.452 H27 I6O 49 I6O H28 H28 H 0 1 N N N N N N 30.936 -0.222 -19.323 1.010 2.067 0.703 H28 I6O 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I6O C31 C30 DOUB Y N 1 I6O C31 C32 SING Y N 2 I6O C30 C29 SING Y N 3 I6O C32 C33 DOUB Y N 4 I6O C29 C28 DOUB Y N 5 I6O C33 C28 SING Y N 6 I6O C28 C27 SING N N 7 I6O C27 C34 DOUB Y N 8 I6O C27 N6 SING Y N 9 I6O C34 N7 SING Y N 10 I6O N6 C DOUB Y N 11 I6O N7 C SING Y N 12 I6O N7 C35 SING N N 13 I6O C41 C40 SING N N 14 I6O C41 C36 SING N N 15 I6O C CA SING N N 16 I6O C40 C39 SING N N 17 I6O C35 C36 SING N N 18 I6O C39 C38 SING N N 19 I6O C36 C37 SING N N 20 I6O CG CD SING N N 21 I6O CG CB SING N N 22 I6O CA N SING N N 23 I6O CA CB SING N N 24 I6O N CD SING N N 25 I6O C37 C38 SING N N 26 I6O N H1 SING N N 27 I6O CD H3 SING N N 28 I6O CD H4 SING N N 29 I6O CG H5 SING N N 30 I6O CG H6 SING N N 31 I6O CB H7 SING N N 32 I6O CB H8 SING N N 33 I6O CA H9 SING N N 34 I6O C29 H10 SING N N 35 I6O C30 H11 SING N N 36 I6O C31 H12 SING N N 37 I6O C32 H13 SING N N 38 I6O C33 H14 SING N N 39 I6O C34 H15 SING N N 40 I6O C35 H16 SING N N 41 I6O C35 H17 SING N N 42 I6O C36 H18 SING N N 43 I6O C37 H19 SING N N 44 I6O C37 H20 SING N N 45 I6O C38 H21 SING N N 46 I6O C38 H22 SING N N 47 I6O C39 H23 SING N N 48 I6O C39 H24 SING N N 49 I6O C40 H25 SING N N 50 I6O C40 H26 SING N N 51 I6O C41 H27 SING N N 52 I6O C41 H28 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I6O SMILES ACDLabs 12.01 "C1CC(Cn2cc(nc2C2CCCN2)c2ccccc2)CCC1" I6O InChI InChI 1.06 "InChI=1S/C20H27N3/c1-3-8-16(9-4-1)14-23-15-19(17-10-5-2-6-11-17)22-20(23)18-12-7-13-21-18/h2,5-6,10-11,15-16,18,21H,1,3-4,7-9,12-14H2/t18-/m0/s1" I6O InChIKey InChI 1.06 YMIBXGQFWHXYCG-SFHVURJKSA-N I6O SMILES_CANONICAL CACTVS 3.385 "C1CCC(CC1)Cn2cc(nc2[C@@H]3CCCN3)c4ccccc4" I6O SMILES CACTVS 3.385 "C1CCC(CC1)Cn2cc(nc2[CH]3CCCN3)c4ccccc4" I6O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(c(n2)[C@@H]3CCCN3)CC4CCCCC4" I6O SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2cn(c(n2)C3CCCN3)CC4CCCCC4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier I6O "SYSTEMATIC NAME" ACDLabs 12.01 "1-(cyclohexylmethyl)-4-phenyl-2-[(2S)-pyrrolidin-2-yl]-1H-imidazole" I6O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-(cyclohexylmethyl)-4-phenyl-2-[(2~{S})-pyrrolidin-2-yl]imidazole" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I6O "Create component" 2023-07-28 RCSB I6O "Modify backbone" 2023-11-03 PDBE I6O "Initial release" 2024-05-29 RCSB I6O "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id I6O _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #