data_I70
#
_chem_comp.id I70
_chem_comp.name "(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H46 N6 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-09-16
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 550.691
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I70
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I70 C1 C1 C 0 1 N N N N N N ? ? ? 4.087 2.319 1.333 C1 I70 1
I70 C11 C2 C 0 1 N N S N N N ? ? ? -2.598 0.057 0.580 C11 I70 2
I70 C12 C3 C 0 1 N N N N N N ? ? ? -1.258 -0.305 -0.007 C12 I70 3
I70 C13 C4 C 0 1 N N N N N N ? ? ? -0.418 2.090 0.130 C13 I70 4
I70 C14 C5 C 0 1 N N S N N N ? ? ? 0.979 0.515 -0.892 C14 I70 5
I70 C15 C6 C 0 1 N N N N N N ? ? ? 2.080 0.446 0.134 C15 I70 6
I70 C16 C7 C 0 1 N N S N N N ? ? ? 0.201 2.829 -1.076 C16 I70 7
I70 C17 C8 C 0 1 N N S N N N ? ? ? 4.368 -0.083 0.785 C17 I70 8
I70 C18 C9 C 0 1 N N N N N N ? ? ? -0.118 2.312 -2.480 C18 I70 9
I70 C19 C10 C 0 1 N N N N N N ? ? ? 5.380 -1.155 0.375 C19 I70 10
I70 C20 C11 C 0 1 N N S N N N ? ? ? 4.724 -2.535 0.463 C20 I70 11
I70 C21 C12 C 0 1 N N N N N N ? ? ? 5.737 -3.640 0.083 C21 I70 12
I70 C22 C13 C 0 1 N N N N N N ? ? ? 5.449 -3.827 -1.423 C22 I70 13
I70 C23 C14 C 0 1 N N N N N N ? ? ? -1.303 1.356 -2.627 C23 I70 14
I70 C24 C15 C 0 1 N N N N N N ? ? ? 3.627 -2.666 -0.571 C24 I70 15
I70 C25 C16 C 0 1 N N N N N N ? ? ? 0.106 3.269 -3.652 C25 I70 16
I70 C26 C17 C 0 1 N N N N N N ? ? ? -2.287 -1.490 2.517 C26 I70 17
I70 C27 C18 C 0 1 N N N N N N ? ? ? -7.731 -0.578 0.932 C27 I70 18
I70 C28 C19 C 0 1 N N N N N N ? ? ? -8.099 -2.074 -1.035 C28 I70 19
I70 C29 C20 C 0 1 N N N N N N ? ? ? -7.389 0.296 -1.384 C29 I70 20
I70 C30 C21 C 0 1 N N N N N N ? ? ? -2.529 -0.036 2.106 C30 I70 21
I70 C31 C22 C 0 1 N N N N N N ? ? ? -1.382 0.837 2.618 C31 I70 22
I70 C32 C23 C 0 1 N N N N N N ? ? ? -3.849 0.451 2.707 C32 I70 23
I70 C34 C24 C 0 1 N N R N N N ? ? ? 1.122 1.791 -1.750 C34 I70 24
I70 C7 C25 C 0 1 N N N N N N ? ? ? -7.251 -0.929 -0.478 C7 I70 25
I70 C8 C26 C 0 1 N N R N N N ? ? ? 5.070 1.274 0.872 C8 I70 26
I70 C9 C27 C 0 1 N N N N N N ? ? ? -4.909 -0.489 0.033 C9 I70 27
I70 N10 N1 N 0 1 N N N N N N ? ? ? -3.617 -0.869 0.080 N10 I70 28
I70 N13 N2 N 0 1 N N N N N N ? ? ? -0.339 0.656 -0.231 N13 I70 29
I70 N16 N3 N 0 1 N N N N N N ? ? ? 3.297 -0.016 -0.213 N16 I70 30
I70 N2 N4 N 0 1 N N N N N N ? ? ? 3.537 2.232 2.561 N2 I70 31
I70 N23 N5 N 0 1 N N N N N N ? ? ? 4.058 -3.398 -1.612 N23 I70 32
I70 N8 N6 N 0 1 N N N N N N ? ? ? -5.846 -1.342 -0.427 N8 I70 33
I70 O26 O1 O 0 1 N N N N N N ? ? ? 2.520 -2.181 -0.474 O26 I70 34
I70 O29 O2 O 0 1 N N N N N N ? ? ? -5.229 0.623 0.406 O29 I70 35
I70 O33 O3 O 0 1 N N N N N N ? ? ? -1.007 -1.459 -0.278 O33 I70 36
I70 O38 O4 O 0 1 N N N N N N ? ? ? 1.871 0.807 1.273 O38 I70 37
I70 O5 O5 O 0 1 N N N N N N ? ? ? 3.794 3.241 0.602 O5 I70 38
I70 O9 O6 O 0 1 N N N N N N ? ? ? 5.576 1.632 -0.416 O9 I70 39
I70 H1 H1 H 0 1 N N N N N N ? ? ? -2.859 1.075 0.290 H1 I70 40
I70 H2 H2 H 0 1 N N N N N N ? ? ? 0.159 2.287 1.033 H2 I70 41
I70 H3 H3 H 0 1 N N N N N N ? ? ? -1.456 2.391 0.268 H3 I70 42
I70 H4 H4 H 0 1 N N N N N N ? ? ? 0.994 -0.372 -1.525 H4 I70 43
I70 H5 H5 H 0 1 N N N N N N ? ? ? 0.512 3.864 -0.930 H5 I70 44
I70 H6 H6 H 0 1 N N N N N N ? ? ? 3.943 -0.336 1.756 H6 I70 45
I70 H7 H7 H 0 1 N N N N N N ? ? ? 5.708 -0.973 -0.648 H7 I70 46
I70 H8 H8 H 0 1 N N N N N N ? ? ? 6.239 -1.118 1.045 H8 I70 47
I70 H9 H9 H 0 1 N N N N N N ? ? ? 4.327 -2.705 1.464 H9 I70 48
I70 H10 H10 H 0 1 N N N N N N ? ? ? 6.761 -3.304 0.246 H10 I70 49
I70 H11 H11 H 0 1 N N N N N N ? ? ? 5.537 -4.559 0.636 H11 I70 50
I70 H12 H12 H 0 1 N N N N N N ? ? ? 6.120 -3.205 -2.015 H12 I70 51
I70 H13 H13 H 0 1 N N N N N N ? ? ? 5.562 -4.875 -1.701 H13 I70 52
I70 H14 H14 H 0 1 N N N N N N ? ? ? -2.105 1.852 -3.173 H14 I70 53
I70 H15 H15 H 0 1 N N N N N N ? ? ? -0.988 0.467 -3.173 H15 I70 54
I70 H16 H16 H 0 1 N N N N N N ? ? ? -1.661 1.067 -1.639 H16 I70 55
I70 H17 H17 H 0 1 N N N N N N ? ? ? 0.619 4.163 -3.299 H17 I70 56
I70 H18 H18 H 0 1 N N N N N N ? ? ? 0.714 2.778 -4.412 H18 I70 57
I70 H19 H19 H 0 1 N N N N N N ? ? ? -0.856 3.549 -4.082 H19 I70 58
I70 H20 H20 H 0 1 N N N N N N ? ? ? -1.347 -1.837 2.089 H20 I70 59
I70 H21 H21 H 0 1 N N N N N N ? ? ? -2.237 -1.556 3.604 H21 I70 60
I70 H22 H22 H 0 1 N N N N N N ? ? ? -3.104 -2.112 2.152 H22 I70 61
I70 H23 H23 H 0 1 N N N N N N ? ? ? -8.776 -0.270 0.894 H23 I70 62
I70 H24 H24 H 0 1 N N N N N N ? ? ? -7.632 -1.451 1.577 H24 I70 63
I70 H25 H25 H 0 1 N N N N N N ? ? ? -7.126 0.238 1.329 H25 I70 64
I70 H26 H26 H 0 1 N N N N N N ? ? ? -7.757 -2.324 -2.039 H26 I70 65
I70 H27 H27 H 0 1 N N N N N N ? ? ? -8.000 -2.947 -0.390 H27 I70 66
I70 H28 H28 H 0 1 N N N N N N ? ? ? -9.144 -1.766 -1.073 H28 I70 67
I70 H29 H29 H 0 1 N N N N N N ? ? ? -7.047 0.046 -2.388 H29 I70 68
I70 H30 H30 H 0 1 N N N N N N ? ? ? -8.434 0.604 -1.422 H30 I70 69
I70 H31 H31 H 0 1 N N N N N N ? ? ? -6.785 1.112 -0.987 H31 I70 70
I70 H32 H32 H 0 1 N N N N N N ? ? ? -0.449 0.523 2.149 H32 I70 71
I70 H33 H33 H 0 1 N N N N N N ? ? ? -1.580 1.880 2.371 H33 I70 72
I70 H34 H34 H 0 1 N N N N N N ? ? ? -1.298 0.729 3.700 H34 I70 73
I70 H35 H35 H 0 1 N N N N N N ? ? ? -3.799 0.385 3.794 H35 I70 74
I70 H36 H36 H 0 1 N N N N N N ? ? ? -4.021 1.487 2.414 H36 I70 75
I70 H37 H37 H 0 1 N N N N N N ? ? ? -4.666 -0.170 2.342 H37 I70 76
I70 H38 H38 H 0 1 N N N N N N ? ? ? 2.113 2.055 -2.118 H38 I70 77
I70 H39 H39 H 0 1 N Y N N N N ? ? ? 5.894 1.211 1.582 H39 I70 78
I70 H40 H40 H 0 1 N N N N N N ? ? ? -3.361 -1.757 -0.217 H40 I70 79
I70 H41 H41 H 0 1 N N N N N N ? ? ? 3.465 -0.304 -1.124 H41 I70 80
I70 H42 H42 H 0 1 N N N N N N ? ? ? 3.828 1.539 3.174 H42 I70 81
I70 H43 H43 H 0 1 N N N N N N ? ? ? 2.851 2.862 2.831 H43 I70 82
I70 H44 H44 H 0 1 N N N N N N ? ? ? 3.520 -3.615 -2.389 H44 I70 83
I70 H45 H45 H 0 1 N N N N N N ? ? ? -5.590 -2.229 -0.724 H45 I70 84
I70 H46 H46 H 0 1 N N N N N N ? ? ? 6.216 1.002 -0.776 H46 I70 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I70 C32 C30 SING N N 1
I70 C26 C30 SING N N 2
I70 C30 C11 SING N N 3
I70 C30 C31 SING N N 4
I70 C13 C16 SING N N 5
I70 C13 N13 SING N N 6
I70 O29 C9 DOUB N N 7
I70 C16 C34 SING N N 8
I70 C16 C18 SING N N 9
I70 O38 C15 DOUB N N 10
I70 C11 N10 SING N N 11
I70 C11 C12 SING N N 12
I70 C29 C7 SING N N 13
I70 C9 N10 SING N N 14
I70 C9 N8 SING N N 15
I70 N13 C12 SING N N 16
I70 N13 C14 SING N N 17
I70 N2 C1 SING N N 18
I70 C34 C18 SING N N 19
I70 C34 C14 SING N N 20
I70 C25 C18 SING N N 21
I70 C12 O33 DOUB N N 22
I70 C21 C22 SING N N 23
I70 C21 C20 SING N N 24
I70 C18 C23 SING N N 25
I70 C15 C14 SING N N 26
I70 C15 N16 SING N N 27
I70 C22 N23 SING N N 28
I70 C7 N8 SING N N 29
I70 C7 C28 SING N N 30
I70 C7 C27 SING N N 31
I70 O9 C8 SING N N 32
I70 C1 C8 SING N N 33
I70 C1 O5 DOUB N N 34
I70 C17 N16 SING N N 35
I70 C17 C8 SING N N 36
I70 C17 C19 SING N N 37
I70 C20 C19 SING N N 38
I70 C20 C24 SING N N 39
I70 N23 C24 SING N N 40
I70 C24 O26 DOUB N N 41
I70 C11 H1 SING N N 42
I70 C13 H2 SING N N 43
I70 C13 H3 SING N N 44
I70 C14 H4 SING N N 45
I70 C16 H5 SING N N 46
I70 C17 H6 SING N N 47
I70 C19 H7 SING N N 48
I70 C19 H8 SING N N 49
I70 C20 H9 SING N N 50
I70 C21 H10 SING N N 51
I70 C21 H11 SING N N 52
I70 C22 H12 SING N N 53
I70 C22 H13 SING N N 54
I70 C23 H14 SING N N 55
I70 C23 H15 SING N N 56
I70 C23 H16 SING N N 57
I70 C25 H17 SING N N 58
I70 C25 H18 SING N N 59
I70 C25 H19 SING N N 60
I70 C26 H20 SING N N 61
I70 C26 H21 SING N N 62
I70 C26 H22 SING N N 63
I70 C27 H23 SING N N 64
I70 C27 H24 SING N N 65
I70 C27 H25 SING N N 66
I70 C28 H26 SING N N 67
I70 C28 H27 SING N N 68
I70 C28 H28 SING N N 69
I70 C29 H29 SING N N 70
I70 C29 H30 SING N N 71
I70 C29 H31 SING N N 72
I70 C31 H32 SING N N 73
I70 C31 H33 SING N N 74
I70 C31 H34 SING N N 75
I70 C32 H35 SING N N 76
I70 C32 H36 SING N N 77
I70 C32 H37 SING N N 78
I70 C34 H38 SING N N 79
I70 C8 H39 SING N N 80
I70 N10 H40 SING N N 81
I70 N16 H41 SING N N 82
I70 N2 H42 SING N N 83
I70 N2 H43 SING N N 84
I70 N23 H44 SING N N 85
I70 N8 H45 SING N N 86
I70 O9 H46 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I70 SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)C(O)C(N)=O)N(CC21)C(=O)C(NC(=O)NC(C)(C)C)C(C)(C)C"
I70 InChI InChI 1.03 "InChI=1S/C27H46N6O6/c1-25(2,3)19(31-24(39)32-26(4,5)6)23(38)33-12-14-16(27(14,7)8)17(33)22(37)30-15(18(34)20(28)35)11-13-9-10-29-21(13)36/h13-19,34H,9-12H2,1-8H3,(H2,28,35)(H,29,36)(H,30,37)(H2,31,32,39)/t13-,14-,15-,16-,17-,18+,19+/m0/s1"
I70 InChIKey InChI 1.03 PGHPGMLPXLZINT-UYYZUGKPSA-N
I70 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)NC(=O)N[C@H](C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)C(N)=O)C2(C)C)C(C)(C)C"
I70 SMILES CACTVS 3.385 "CC(C)(C)NC(=O)N[CH](C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)C(N)=O)C2(C)C)C(C)(C)C"
I70 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](C(=O)N)O)C"
I70 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)NC(C)(C)C)C(=O)NC(CC3CCNC3=O)C(C(=O)N)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I70 "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5S)-N-{(2S,3R)-4-amino-3-hydroxy-4-oxo-1-[(3S)-2-oxopyrrolidin-3-yl]butan-2-yl}-3-[N-(tert-butylcarbamoyl)-3-methyl-L-valyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"
I70 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(2~{S},3~{R})-4-azanyl-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3-[(2~{S})-2-(~{tert}-butylcarbamoylamino)-3,3-dimethyl-butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I70 "Create component" 2021-09-16 RCSB
I70 "Initial release" 2022-03-09 RCSB
I70 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id I70
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C8
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#