data_I7N
#
_chem_comp.id I7N
_chem_comp.name "N-[(3R)-1-(3,4-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-sulfonyl)piperidine-3-carbonyl]-L-aspartic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H22 N2 O11 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-21
_chem_comp.pdbx_modified_date 2022-03-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 546.503
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I7N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5SCA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I7N C1 C1 C 0 1 Y N N -8.784 -59.152 41.008 1.842 2.053 0.935 C1 I7N 1
I7N C2 C2 C 0 1 Y N N -10.161 -58.893 41.174 2.722 1.137 1.525 C2 I7N 2
I7N C3 C3 C 0 1 Y N N -8.929 -60.854 42.734 2.086 0.956 -1.190 C3 I7N 3
I7N C4 C4 C 0 1 Y N N -10.294 -60.619 42.895 2.963 0.036 -0.623 C4 I7N 4
I7N C5 C5 C 0 1 Y N N -10.934 -59.640 42.107 3.285 0.126 0.748 C5 I7N 5
I7N C6 C6 C 0 1 N N N -12.401 -59.434 42.216 4.216 -0.850 1.346 C6 I7N 6
I7N C7 C7 C 0 1 Y N N -13.167 -60.284 43.150 5.030 -1.709 0.458 C7 I7N 7
I7N O8 O1 O 0 1 N N N -8.165 -66.267 34.657 -3.009 -3.348 -0.370 O8 I7N 8
I7N O10 O2 O 0 1 N N N -6.003 -60.787 43.047 0.283 2.738 -2.501 O10 I7N 9
I7N C12 C8 C 0 1 Y N N -12.522 -61.240 43.949 4.708 -1.800 -0.909 C12 I7N 10
I7N C21 C9 C 0 1 N N N -8.246 -64.605 36.407 -5.135 -3.083 0.611 C21 I7N 11
I7N S S1 S 0 1 N N N -6.438 -60.489 41.718 0.424 3.117 -1.138 S I7N 12
I7N O O3 O 0 1 N N N -5.823 -59.425 40.990 0.866 4.404 -0.731 O I7N 13
I7N N N1 N 0 1 N N N -6.219 -61.850 40.840 -1.058 2.887 -0.434 N I7N 14
I7N C23 C10 C 0 1 N N N -5.030 -61.887 39.964 -2.020 1.936 -1.007 C23 I7N 15
I7N C17 C11 C 0 1 N N R -5.158 -63.028 38.946 -2.451 0.953 0.086 C17 I7N 16
I7N C18 C12 C 0 1 N N N -6.246 -62.846 37.905 -3.536 0.053 -0.448 C18 I7N 17
I7N O9 O4 O 0 1 N N N -7.250 -62.178 38.132 -3.925 0.183 -1.589 O9 I7N 18
I7N N1 N2 N 0 1 N N N -6.053 -63.503 36.752 -4.075 -0.895 0.344 N1 I7N 19
I7N C19 C13 C 0 1 N N S -7.101 -63.783 35.777 -5.130 -1.770 -0.174 C19 I7N 20
I7N C22 C14 C 0 1 N N N -8.520 -65.958 35.779 -3.846 -3.822 0.361 C22 I7N 21
I7N O7 O5 O 0 1 N N N -9.200 -66.764 36.563 -3.628 -5.008 0.950 O7 I7N 22
I7N C20 C15 C 0 1 N N N -7.652 -62.520 35.123 -6.466 -1.089 -0.023 C20 I7N 23
I7N O6 O6 O 0 1 N N N -7.891 -61.509 35.759 -6.530 0.014 0.468 O6 I7N 24
I7N O5 O7 O 0 1 N N N -7.872 -62.630 33.823 -7.585 -1.707 -0.433 O5 I7N 25
I7N C16 C16 C 0 1 N N N -5.346 -64.348 39.699 -2.981 1.735 1.290 C16 I7N 26
I7N C15 C17 C 0 1 N N N -6.555 -64.288 40.628 -1.870 2.624 1.852 C15 I7N 27
I7N C14 C18 C 0 1 N N N -6.445 -63.111 41.576 -1.432 3.626 0.779 C14 I7N 28
I7N C C19 C 0 1 Y N N -8.182 -60.150 41.801 1.532 1.956 -0.411 C I7N 29
I7N C13 C20 C 0 1 N N N -11.057 -61.444 43.861 3.561 -1.035 -1.444 C13 I7N 30
I7N O3 O8 O 0 1 N N N -10.490 -62.269 44.570 3.115 -1.285 -2.547 O3 I7N 31
I7N C11 C21 C 0 1 Y N N -13.279 -62.044 44.803 5.473 -2.607 -1.745 C11 I7N 32
I7N C10 C22 C 0 1 Y N N -14.656 -61.907 44.841 6.544 -3.315 -1.227 C10 I7N 33
I7N C9 C23 C 0 1 Y N N -15.289 -60.981 44.042 6.859 -3.226 0.116 C9 I7N 34
I7N C8 C24 C 0 1 Y N N -14.555 -60.163 43.202 6.109 -2.427 0.962 C8 I7N 35
I7N O4 O9 O 0 1 N N N -12.976 -58.577 41.554 4.313 -0.947 2.554 O4 I7N 36
I7N O2 O10 O 0 1 N N N -10.716 -57.888 40.439 3.025 1.234 2.843 O2 I7N 37
I7N O1 O11 O 0 1 N N N -8.082 -58.443 40.067 1.286 3.037 1.688 O1 I7N 38
I7N H3 H1 H 0 1 N N N -8.444 -61.599 43.348 1.838 0.889 -2.239 H3 I7N 39
I7N H18 H2 H 0 1 N N N -7.998 -64.770 37.466 -5.231 -2.870 1.676 H18 I7N 40
I7N H17 H3 H 0 1 N N N -9.167 -64.008 36.335 -5.975 -3.697 0.286 H17 I7N 41
I7N H20 H4 H 0 1 N N N -4.131 -62.047 40.578 -2.891 2.476 -1.377 H20 I7N 42
I7N H21 H5 H 0 1 N N N -4.943 -60.930 39.428 -1.551 1.392 -1.827 H21 I7N 43
I7N H14 H6 H 0 1 N N N -4.199 -63.093 38.410 -1.596 0.350 0.391 H14 I7N 44
I7N H15 H7 H 0 1 N N N -5.128 -63.823 36.547 -3.764 -0.999 1.257 H15 I7N 45
I7N H H8 H 0 1 N N N -6.665 -64.400 34.977 -4.945 -1.977 -1.228 H I7N 46
I7N H19 H9 H 0 1 N N N -9.354 -67.587 36.115 -2.786 -5.445 0.760 H19 I7N 47
I7N H16 H10 H 0 1 N N N -8.233 -61.816 33.492 -8.418 -1.231 -0.315 H16 I7N 48
I7N H13 H11 H 0 1 N N N -5.494 -65.159 38.970 -3.821 2.356 0.978 H13 I7N 49
I7N H12 H12 H 0 1 N N N -4.445 -64.552 40.296 -3.312 1.036 2.059 H12 I7N 50
I7N H11 H13 H 0 1 N N N -7.469 -64.182 40.025 -2.241 3.163 2.724 H11 I7N 51
I7N H10 H14 H 0 1 N N N -6.608 -65.218 41.212 -1.020 2.006 2.141 H10 I7N 52
I7N H9 H15 H 0 1 N N N -7.378 -63.027 42.153 -0.574 4.192 1.142 H9 I7N 53
I7N H8 H16 H 0 1 N N N -5.603 -63.281 42.263 -2.252 4.308 0.554 H8 I7N 54
I7N H7 H17 H 0 1 N N N -12.791 -62.772 45.434 5.231 -2.681 -2.795 H7 I7N 55
I7N H6 H18 H 0 1 N N N -15.238 -62.531 45.502 7.137 -3.941 -1.877 H6 I7N 56
I7N H5 H19 H 0 1 N N N -16.365 -60.893 44.071 7.697 -3.783 0.508 H5 I7N 57
I7N H4 H20 H 0 1 N N N -15.057 -59.431 42.587 6.360 -2.362 2.010 H4 I7N 58
I7N H2 H21 H 0 1 N N N -11.648 -57.843 40.616 2.432 0.733 3.420 H2 I7N 59
I7N H1 H22 H 0 1 N N N -7.153 -58.616 40.167 1.806 3.852 1.715 H1 I7N 60
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I7N O5 C20 SING N N 1
I7N O8 C22 DOUB N N 2
I7N C20 O6 DOUB N N 3
I7N C20 C19 SING N N 4
I7N C19 C21 SING N N 5
I7N C19 N1 SING N N 6
I7N C22 C21 SING N N 7
I7N C22 O7 SING N N 8
I7N N1 C18 SING N N 9
I7N C18 O9 DOUB N N 10
I7N C18 C17 SING N N 11
I7N C17 C16 SING N N 12
I7N C17 C23 SING N N 13
I7N C16 C15 SING N N 14
I7N C23 N SING N N 15
I7N O1 C1 SING N N 16
I7N O2 C2 SING N N 17
I7N C15 C14 SING N N 18
I7N N C14 SING N N 19
I7N N S SING N N 20
I7N O S DOUB N N 21
I7N C1 C2 DOUB Y N 22
I7N C1 C SING Y N 23
I7N C2 C5 SING Y N 24
I7N O4 C6 DOUB N N 25
I7N S C SING N N 26
I7N S O10 DOUB N N 27
I7N C C3 DOUB Y N 28
I7N C5 C6 SING N N 29
I7N C5 C4 DOUB Y N 30
I7N C6 C7 SING N N 31
I7N C3 C4 SING Y N 32
I7N C4 C13 SING N N 33
I7N C7 C8 DOUB Y N 34
I7N C7 C12 SING Y N 35
I7N C8 C9 SING Y N 36
I7N C13 C12 SING N N 37
I7N C13 O3 DOUB N N 38
I7N C12 C11 DOUB Y N 39
I7N C9 C10 DOUB Y N 40
I7N C11 C10 SING Y N 41
I7N C3 H3 SING N N 42
I7N C21 H18 SING N N 43
I7N C21 H17 SING N N 44
I7N C23 H20 SING N N 45
I7N C23 H21 SING N N 46
I7N C17 H14 SING N N 47
I7N N1 H15 SING N N 48
I7N C19 H SING N N 49
I7N O7 H19 SING N N 50
I7N O5 H16 SING N N 51
I7N C16 H13 SING N N 52
I7N C16 H12 SING N N 53
I7N C15 H11 SING N N 54
I7N C15 H10 SING N N 55
I7N C14 H9 SING N N 56
I7N C14 H8 SING N N 57
I7N C11 H7 SING N N 58
I7N C10 H6 SING N N 59
I7N C9 H5 SING N N 60
I7N C8 H4 SING N N 61
I7N O2 H2 SING N N 62
I7N O1 H1 SING N N 63
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I7N SMILES ACDLabs 12.01 "O=S(=O)(c1cc2C(=O)c3ccccc3C(=O)c2c(O)c1O)N1CCCC(C1)C(=O)NC(CC(=O)O)C(=O)O"
I7N InChI InChI 1.03 "InChI=1S/C24H22N2O11S/c27-17(28)9-15(24(34)35)25-23(33)11-4-3-7-26(10-11)38(36,37)16-8-14-18(22(32)21(16)31)20(30)13-6-2-1-5-12(13)19(14)29/h1-2,5-6,8,11,15,31-32H,3-4,7,9-10H2,(H,25,33)(H,27,28)(H,34,35)/t11-,15+/m1/s1"
I7N InChIKey InChI 1.03 HWQZQOYBMBRIAX-ABAIWWIYSA-N
I7N SMILES_CANONICAL CACTVS 3.385 "OC(=O)C[C@H](NC(=O)[C@@H]1CCCN(C1)[S](=O)(=O)c2cc3C(=O)c4ccccc4C(=O)c3c(O)c2O)C(O)=O"
I7N SMILES CACTVS 3.385 "OC(=O)C[CH](NC(=O)[CH]1CCCN(C1)[S](=O)(=O)c2cc3C(=O)c4ccccc4C(=O)c3c(O)c2O)C(O)=O"
I7N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3cc(c(c(c3C2=O)O)O)S(=O)(=O)N4CCC[C@H](C4)C(=O)N[C@@H](CC(=O)O)C(=O)O"
I7N SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3cc(c(c(c3C2=O)O)O)S(=O)(=O)N4CCCC(C4)C(=O)NC(CC(=O)O)C(=O)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I7N "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3R)-1-(3,4-dihydroxy-9,10-dioxo-9,10-dihydroanthracene-2-sulfonyl)piperidine-3-carbonyl]-L-aspartic acid"
I7N "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(3~{R})-1-[3,4-bis(oxidanyl)-9,10-bis(oxidanylidene)anthracen-2-yl]sulfonylpiperidin-3-yl]carbonylamino]butanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I7N "Create component" 2022-01-21 RCSB
I7N "Initial release" 2022-03-16 RCSB
##