data_I9K
#
_chem_comp.id I9K
_chem_comp.name "(2R)-2-hydroxy-2-{2-[4-(3-hydroxy-9,10-dioxo-9,10-dihydroanthracene-2-sulfonyl)piperazin-1-yl]-2-oxoethyl}butanedioic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H22 N2 O11 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-24
_chem_comp.pdbx_modified_date 2022-03-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 546.503
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I9K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 5SCJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I9K C10 C1 C 0 1 Y N N -9.189 -60.473 43.222 ? ? ? C10 I9K 1
I9K C12 C2 C 0 1 N N N -6.905 -62.528 41.476 ? ? ? C12 I9K 2
I9K C13 C3 C 0 1 N N N -6.079 -63.596 40.782 ? ? ? C13 I9K 3
I9K C15 C4 C 0 1 N N N -6.231 -63.711 36.934 ? ? ? C15 I9K 4
I9K C19 C5 C 0 1 N N N -7.874 -63.044 33.592 ? ? ? C19 I9K 5
I9K C21 C6 C 0 1 N N N -6.062 -60.897 39.858 ? ? ? C21 I9K 6
I9K C22 C7 C 0 1 Y N N -9.094 -59.137 41.208 ? ? ? C22 I9K 7
I9K C23 C8 C 0 1 Y N N -10.473 -58.993 41.257 ? ? ? C23 I9K 8
I9K C1 C9 C 0 1 Y N N -13.462 -60.220 43.278 ? ? ? C1 I9K 9
I9K C2 C10 C 0 1 Y N N -14.848 -60.298 43.161 ? ? ? C2 I9K 10
I9K C3 C11 C 0 1 Y N N -15.572 -61.118 44.009 ? ? ? C3 I9K 11
I9K C4 C12 C 0 1 Y N N -14.936 -61.836 44.993 ? ? ? C4 I9K 12
I9K C5 C13 C 0 1 Y N N -13.561 -61.764 45.137 ? ? ? C5 I9K 13
I9K C6 C14 C 0 1 Y N N -12.810 -60.972 44.270 ? ? ? C6 I9K 14
I9K O1 O1 O 0 1 N N N -10.763 -61.615 45.248 ? ? ? O1 I9K 15
I9K C7 C15 C 0 1 N N N -11.334 -61.034 44.331 ? ? ? C7 I9K 16
I9K C8 C16 C 0 1 Y N N -11.221 -59.579 42.287 ? ? ? C8 I9K 17
I9K C9 C17 C 0 1 Y N N -10.571 -60.336 43.277 ? ? ? C9 I9K 18
I9K O2 O2 O 0 1 N N N -8.481 -63.118 36.286 ? ? ? O2 I9K 19
I9K C11 C18 C 0 1 Y N N -8.456 -59.877 42.210 ? ? ? C11 I9K 20
I9K C14 C19 C 0 1 N N N -6.361 -64.105 38.393 ? ? ? C14 I9K 21
I9K O3 O3 O 0 1 N N N -6.980 -66.378 35.841 ? ? ? O3 I9K 22
I9K C16 C20 C 0 1 N N R -7.401 -64.001 35.975 ? ? ? C16 I9K 23
I9K C17 C21 C 0 1 N N N -7.907 -65.448 36.075 ? ? ? C17 I9K 24
I9K C18 C22 C 0 1 N N N -6.905 -63.706 34.545 ? ? ? C18 I9K 25
I9K C20 C23 C 0 1 N N N -5.229 -61.980 39.237 ? ? ? C20 I9K 26
I9K O4 O4 O 0 1 N N N -9.074 -65.720 36.325 ? ? ? O4 I9K 27
I9K O9 O5 O 0 1 N N N -6.328 -60.417 43.608 ? ? ? O9 I9K 28
I9K S S1 S 0 1 N N N -6.687 -60.006 42.287 ? ? ? S I9K 29
I9K O8 O6 O 0 1 N N N -6.147 -58.801 41.741 ? ? ? O8 I9K 30
I9K O10 O7 O 0 1 N N N -8.404 -58.552 40.191 ? ? ? O10 I9K 31
I9K C C24 C 0 1 N N N -12.693 -59.446 42.277 ? ? ? C I9K 32
I9K O O8 O 0 1 N N N -13.250 -58.653 41.524 ? ? ? O I9K 33
I9K N N1 N 0 1 N N N -6.257 -61.217 41.283 ? ? ? N I9K 34
I9K N1 N2 N 0 1 N N N -5.928 -63.264 39.361 ? ? ? N1 I9K 35
I9K O7 O9 O 0 1 N N N -6.785 -65.217 38.662 ? ? ? O7 I9K 36
I9K O6 O10 O 0 1 N N N -7.708 -61.910 33.181 ? ? ? O6 I9K 37
I9K O5 O11 O 0 1 N N N -8.890 -63.792 33.230 ? ? ? O5 I9K 38
I9K H4 H1 H 0 1 N N N -8.680 -61.052 43.979 ? ? ? H4 I9K 39
I9K H5 H2 H 0 1 N N N -6.970 -62.753 42.551 ? ? ? H5 I9K 40
I9K H6 H3 H 0 1 N N N -7.917 -62.506 41.045 ? ? ? H6 I9K 41
I9K H7 H4 H 0 1 N N N -5.086 -63.652 41.251 ? ? ? H7 I9K 42
I9K H8 H5 H 0 1 N N N -6.585 -64.568 40.878 ? ? ? H8 I9K 43
I9K H9 H6 H 0 1 N N N -6.054 -62.626 36.908 ? ? ? H9 I9K 44
I9K H10 H7 H 0 1 N N N -5.350 -64.236 36.536 ? ? ? H10 I9K 45
I9K H18 H8 H 0 1 N N N -5.546 -59.930 39.762 ? ? ? H18 I9K 46
I9K H19 H9 H 0 1 N N N -7.038 -60.843 39.353 ? ? ? H19 I9K 47
I9K H21 H10 H 0 1 N N N -10.977 -58.422 40.491 ? ? ? H21 I9K 48
I9K H H11 H 0 1 N N N -15.359 -59.717 42.407 ? ? ? H I9K 49
I9K H1 H12 H 0 1 N N N -16.643 -61.194 43.897 ? ? ? H1 I9K 50
I9K H2 H13 H 0 1 N N N -15.513 -62.461 45.659 ? ? ? H2 I9K 51
I9K H3 H14 H 0 1 N N N -13.070 -62.321 45.921 ? ? ? H3 I9K 52
I9K H11 H15 H 0 1 N N N -9.265 -63.625 36.463 ? ? ? H11 I9K 53
I9K H12 H16 H 0 1 N N N -7.374 -67.240 35.902 ? ? ? H12 I9K 54
I9K H13 H17 H 0 1 N N N -6.026 -63.050 34.630 ? ? ? H13 I9K 55
I9K H14 H18 H 0 1 N N N -6.605 -64.664 34.096 ? ? ? H14 I9K 56
I9K H16 H19 H 0 1 N N N -4.259 -62.039 39.753 ? ? ? H16 I9K 57
I9K H17 H20 H 0 1 N N N -5.065 -61.753 38.173 ? ? ? H17 I9K 58
I9K H20 H21 H 0 1 N N N -7.487 -58.480 40.430 ? ? ? H20 I9K 59
I9K H15 H22 H 0 1 N N N -9.439 -63.309 32.623 ? ? ? H15 I9K 60
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I9K O C DOUB N N 1
I9K C C1 SING N N 2
I9K C1 C2 SING Y N 3
I9K C2 C3 DOUB Y N 4
I9K C3 C4 SING Y N 5
I9K C4 C5 DOUB Y N 6
I9K C1 C6 DOUB Y N 7
I9K C5 C6 SING Y N 8
I9K C6 C7 SING N N 9
I9K O1 C7 DOUB N N 10
I9K C C8 SING N N 11
I9K C8 C9 DOUB Y N 12
I9K C7 C9 SING N N 13
I9K C9 C10 SING Y N 14
I9K C10 C11 DOUB Y N 15
I9K C11 S SING N N 16
I9K N S SING N N 17
I9K N C12 SING N N 18
I9K C12 C13 SING N N 19
I9K C13 N1 SING N N 20
I9K C14 N1 SING N N 21
I9K C15 C14 SING N N 22
I9K C16 C15 SING N N 23
I9K O2 C16 SING N N 24
I9K C17 C16 SING N N 25
I9K O3 C17 SING N N 26
I9K O4 C17 DOUB N N 27
I9K C18 C16 SING N N 28
I9K C19 C18 SING N N 29
I9K O5 C19 SING N N 30
I9K O6 C19 DOUB N N 31
I9K O7 C14 DOUB N N 32
I9K N1 C20 SING N N 33
I9K C20 C21 SING N N 34
I9K C21 N SING N N 35
I9K O8 S DOUB N N 36
I9K S O9 DOUB N N 37
I9K C22 C11 SING Y N 38
I9K O10 C22 SING N N 39
I9K C23 C22 DOUB Y N 40
I9K C8 C23 SING Y N 41
I9K C10 H4 SING N N 42
I9K C12 H5 SING N N 43
I9K C12 H6 SING N N 44
I9K C13 H7 SING N N 45
I9K C13 H8 SING N N 46
I9K C15 H9 SING N N 47
I9K C15 H10 SING N N 48
I9K C21 H18 SING N N 49
I9K C21 H19 SING N N 50
I9K C23 H21 SING N N 51
I9K C2 H SING N N 52
I9K C3 H1 SING N N 53
I9K C4 H2 SING N N 54
I9K C5 H3 SING N N 55
I9K O2 H11 SING N N 56
I9K O3 H12 SING N N 57
I9K C18 H13 SING N N 58
I9K C18 H14 SING N N 59
I9K C20 H16 SING N N 60
I9K C20 H17 SING N N 61
I9K O10 H20 SING N N 62
I9K O5 H15 SING N N 63
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I9K SMILES ACDLabs 12.01 "O=S(=O)(c1cc2C(=O)c3ccccc3C(=O)c2cc1O)N1CCN(CC1)C(=O)CC(O)(CC(=O)O)C(=O)O"
I9K InChI InChI 1.03 "InChI=1S/C24H22N2O11S/c27-17-9-15-16(22(32)14-4-2-1-3-13(14)21(15)31)10-18(17)38(36,37)26-7-5-25(6-8-26)19(28)11-24(35,23(33)34)12-20(29)30/h1-4,9-10,27,35H,5-8,11-12H2,(H,29,30)(H,33,34)/t24-/m1/s1"
I9K InChIKey InChI 1.03 BDGXYHKLUUUHLU-XMMPIXPASA-N
I9K SMILES_CANONICAL CACTVS 3.385 "OC(=O)C[C@](O)(CC(=O)N1CCN(CC1)[S](=O)(=O)c2cc3C(=O)c4ccccc4C(=O)c3cc2O)C(O)=O"
I9K SMILES CACTVS 3.385 "OC(=O)C[C](O)(CC(=O)N1CCN(CC1)[S](=O)(=O)c2cc3C(=O)c4ccccc4C(=O)c3cc2O)C(O)=O"
I9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3cc(c(cc3C2=O)S(=O)(=O)N4CCN(CC4)C(=O)C[C@@](CC(=O)O)(C(=O)O)O)O"
I9K SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)C(=O)c3cc(c(cc3C2=O)S(=O)(=O)N4CCN(CC4)C(=O)CC(CC(=O)O)(C(=O)O)O)O"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I9K "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-hydroxy-2-{2-[4-(3-hydroxy-9,10-dioxo-9,10-dihydroanthracene-2-sulfonyl)piperazin-1-yl]-2-oxoethyl}butanedioic acid"
I9K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-oxidanyl-2-[2-[4-[3-oxidanyl-9,10-bis(oxidanylidene)anthracen-2-yl]sulfonylpiperazin-1-yl]-2-oxidanylidene-ethyl]butanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I9K "Create component" 2022-01-24 RCSB
I9K "Initial release" 2022-03-16 RCSB
##