data_IBL # _chem_comp.id IBL _chem_comp.name "Azo-Combretastatin A4 (cis)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H18 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-methoxy-5-[(Z)-(3,4,5-trimethoxyphenyl)diazenyl]phenol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-08 _chem_comp.pdbx_modified_date 2023-09-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 318.325 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IBL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7YYQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IBL N1 N1 N 0 1 N N N 12.024 -16.988 16.370 -0.414 2.681 0.766 N1 IBL 1 IBL C7 C1 C 0 1 Y N N 14.184 -19.937 17.228 -1.144 -0.898 0.665 C7 IBL 2 IBL C8 C2 C 0 1 N N N 14.888 -20.072 19.509 0.632 -2.007 1.792 C8 IBL 3 IBL C9 C3 C 0 1 Y N N 14.278 -20.482 15.951 -2.381 -0.890 0.025 C9 IBL 4 IBL O1 O1 O 0 1 N N N 14.935 -20.574 18.180 -0.582 -2.077 1.043 O1 IBL 5 IBL C1 C4 C 0 1 Y N N 15.098 -14.762 19.563 3.331 -0.208 -0.575 C1 IBL 6 IBL C5 C5 C 0 1 Y N N 12.684 -18.253 16.390 -1.062 1.504 0.523 C5 IBL 7 IBL C6 C6 C 0 1 Y N N 13.379 -18.832 17.452 -0.484 0.292 0.912 C6 IBL 8 IBL C4 C7 C 0 1 Y N N 13.037 -15.778 18.008 1.662 1.722 0.514 C4 IBL 9 IBL O4 O2 O 0 1 N N N 13.486 -14.075 21.197 1.661 -0.715 -2.202 O4 IBL 10 IBL C3 C8 C 0 1 Y N N 14.356 -15.876 17.577 2.926 1.492 1.066 C3 IBL 11 IBL O3 O3 O 0 1 N N N 13.696 -20.553 13.695 -4.164 0.319 -0.993 O3 IBL 12 IBL C2 C9 C 0 1 Y N N 15.388 -15.386 18.357 3.751 0.532 0.521 C2 IBL 13 IBL N N2 N 0 1 N N N 11.879 -16.415 17.460 0.845 2.677 1.049 N IBL 14 IBL C C10 C 0 1 N N N 17.375 -14.163 19.945 5.375 -1.412 -0.422 C IBL 15 IBL O O4 O 0 1 N N N 16.019 -14.196 20.398 4.146 -1.158 -1.105 O IBL 16 IBL C10 C11 C 0 1 N N N 16.236 -21.242 14.908 -3.919 -2.531 0.797 C10 IBL 17 IBL C11 C12 C 0 1 Y N N 13.547 -19.926 14.903 -2.957 0.315 -0.368 C11 IBL 18 IBL C12 C13 C 0 1 N N N 12.896 -20.099 12.604 -4.646 1.578 -1.467 C12 IBL 19 IBL C13 C14 C 0 1 Y N N 12.747 -18.824 15.124 -2.302 1.508 -0.124 C13 IBL 20 IBL C14 C15 C 0 1 Y N N 12.745 -15.136 19.207 1.241 0.980 -0.594 C14 IBL 21 IBL C15 C16 C 0 1 Y N N 13.771 -14.640 19.992 2.072 0.016 -1.131 C15 IBL 22 IBL O2 O5 O 0 1 N N N 15.106 -21.555 15.721 -3.027 -2.061 -0.216 O2 IBL 23 IBL H6 H2 H 0 1 N N N 15.537 -20.681 20.155 0.926 -3.009 2.104 H6 IBL 24 IBL H8 H3 H 0 1 N N N 15.236 -19.029 19.519 1.418 -1.575 1.171 H8 IBL 25 IBL H7 H4 H 0 1 N N N 13.854 -20.117 19.881 0.481 -1.382 2.672 H7 IBL 26 IBL H5 H5 H 0 1 N N N 13.290 -18.420 18.446 0.477 0.285 1.405 H5 IBL 27 IBL H17 H6 H 0 1 N N N 14.291 -13.786 21.610 1.129 -1.489 -1.969 H17 IBL 28 IBL H4 H7 H 0 1 N N N 14.576 -16.338 16.626 3.254 2.064 1.921 H4 IBL 29 IBL H3 H8 H 0 1 N N N 16.412 -15.488 18.030 4.727 0.355 0.947 H3 IBL 30 IBL H H10 H 0 1 N N N 18.006 -13.684 20.709 5.967 -2.127 -0.993 H IBL 31 IBL H2 H11 H 0 1 N N N 17.728 -15.190 19.769 5.931 -0.481 -0.316 H2 IBL 32 IBL H1 H12 H 0 1 N N N 17.435 -13.590 19.008 5.163 -1.823 0.566 H1 IBL 33 IBL H10 H13 H 0 1 N N N 16.849 -22.145 14.768 -4.367 -3.472 0.478 H10 IBL 34 IBL H11 H14 H 0 1 N N N 15.893 -20.876 13.929 -3.366 -2.687 1.723 H11 IBL 35 IBL H9 H15 H 0 1 N N N 16.837 -20.463 15.400 -4.703 -1.793 0.961 H9 IBL 36 IBL H14 H16 H 0 1 N N N 13.126 -20.694 11.708 -4.667 2.292 -0.643 H14 IBL 37 IBL H13 H17 H 0 1 N N N 11.832 -20.214 12.857 -3.986 1.947 -2.251 H13 IBL 38 IBL H12 H18 H 0 1 N N N 13.114 -19.039 12.406 -5.653 1.455 -1.866 H12 IBL 39 IBL H15 H19 H 0 1 N N N 12.170 -18.405 14.313 -2.749 2.443 -0.429 H15 IBL 40 IBL H16 H20 H 0 1 N N N 11.719 -15.025 19.525 0.266 1.154 -1.023 H16 IBL 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IBL C12 O3 SING N N 1 IBL O3 C11 SING N N 2 IBL C11 C13 DOUB Y N 3 IBL C11 C9 SING Y N 4 IBL C10 O2 SING N N 5 IBL C13 C5 SING Y N 6 IBL O2 C9 SING N N 7 IBL C9 C7 DOUB Y N 8 IBL N1 C5 SING N N 9 IBL N1 N DOUB N N 10 IBL C5 C6 DOUB Y N 11 IBL C7 C6 SING Y N 12 IBL C7 O1 SING N N 13 IBL N C4 SING N N 14 IBL C3 C4 DOUB Y N 15 IBL C3 C2 SING Y N 16 IBL C4 C14 SING Y N 17 IBL O1 C8 SING N N 18 IBL C2 C1 DOUB Y N 19 IBL C14 C15 DOUB Y N 20 IBL C1 C15 SING Y N 21 IBL C1 O SING N N 22 IBL C O SING N N 23 IBL C15 O4 SING N N 24 IBL C8 H6 SING N N 25 IBL C8 H8 SING N N 26 IBL C8 H7 SING N N 27 IBL C6 H5 SING N N 28 IBL O4 H17 SING N N 29 IBL C3 H4 SING N N 30 IBL C2 H3 SING N N 31 IBL C H SING N N 32 IBL C H2 SING N N 33 IBL C H1 SING N N 34 IBL C10 H10 SING N N 35 IBL C10 H11 SING N N 36 IBL C10 H9 SING N N 37 IBL C12 H14 SING N N 38 IBL C12 H13 SING N N 39 IBL C12 H12 SING N N 40 IBL C13 H15 SING N N 41 IBL C14 H16 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IBL InChI InChI 1.06 "InChI=1S/C16H18N2O5/c1-20-13-6-5-10(7-12(13)19)17-18-11-8-14(21-2)16(23-4)15(9-11)22-3/h5-9,19H,1-4H3" IBL InChIKey InChI 1.06 AIRZFEKQGRSBNX-UHFFFAOYSA-N IBL SMILES_CANONICAL CACTVS 3.385 "COc1ccc(cc1O)N=Nc2cc(OC)c(OC)c(OC)c2" IBL SMILES CACTVS 3.385 "COc1ccc(cc1O)N=Nc2cc(OC)c(OC)c(OC)c2" IBL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1O)/N=N\c2cc(c(c(c2)OC)OC)OC" IBL SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cc1O)N=Nc2cc(c(c(c2)OC)OC)OC" # _pdbx_chem_comp_identifier.comp_id IBL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-methoxy-5-[(3,4,5-trimethoxyphenyl)diazenyl]phenol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IBL "Create component" 2022-03-08 PDBE IBL "Modify descriptor" 2022-08-22 RCSB IBL "Initial release" 2023-02-22 RCSB IBL "Other modification" 2023-09-05 PDBE IBL "Modify descriptor" 2023-09-20 PDBE IBL "Modify name" 2023-09-20 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IBL _pdbx_chem_comp_synonyms.name "2-methoxy-5-[(Z)-(3,4,5-trimethoxyphenyl)diazenyl]phenol" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #