data_IC5 # _chem_comp.id IC5 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N5 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-03-09 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 458.235 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IC5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Z43 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IC5 O6 O1 O 0 1 N N N -97.527 3.014 -22.669 5.875 3.159 0.546 O6 IC5 1 IC5 N1 N1 N 0 1 N N N -99.310 3.907 -21.592 6.457 1.265 -0.491 N1 IC5 2 IC5 N2 N2 N 0 1 N N N -101.189 4.652 -20.491 7.027 -0.751 -1.575 N2 IC5 3 IC5 C2 C1 C 0 1 N N N -99.997 4.938 -21.026 6.087 0.040 -0.961 C2 IC5 4 IC5 C4 C2 C 0 1 Y N N -98.323 6.337 -21.553 3.904 0.335 -0.248 C4 IC5 5 IC5 C5 C3 C 0 1 Y N N -97.573 5.335 -22.146 4.235 1.595 0.259 C5 IC5 6 IC5 C6 C4 C 0 1 N N N -98.069 4.006 -22.185 5.554 2.062 0.122 C6 IC5 7 IC5 C8 C5 C 0 1 Y N N -96.410 7.181 -22.220 2.107 1.188 0.615 C8 IC5 8 IC5 N3 N3 N 0 1 N N N -99.535 6.184 -20.985 4.858 -0.407 -0.843 N3 IC5 9 IC5 N7 N4 N 0 1 Y N N -96.407 5.908 -22.599 3.074 2.110 0.800 N7 IC5 10 IC5 N9 N5 N 1 1 Y N N -97.585 7.509 -21.679 2.599 0.142 0.006 N9 IC5 11 IC5 "C1'" C6 C 0 1 N N R -98.065 8.849 -21.304 1.838 -1.056 -0.359 "C1'" IC5 12 IC5 "O4'" O2 O 0 1 N N N -97.538 9.802 -22.207 0.422 -0.774 -0.371 "O4'" IC5 13 IC5 "C2'" C7 C 0 1 N N R -97.637 9.278 -19.936 1.980 -2.146 0.733 "C2'" IC5 14 IC5 "O2'" O3 O 0 1 N N N -98.554 8.722 -19.002 3.147 -2.941 0.511 "O2'" IC5 15 IC5 "C3'" C8 C 0 1 N N S -97.759 10.780 -20.047 0.695 -2.983 0.526 "C3'" IC5 16 IC5 "O3'" O4 O 0 1 N N N -99.073 11.251 -19.807 0.973 -4.140 -0.266 "O3'" IC5 17 IC5 "C4'" C9 C 0 1 N N R -97.329 11.052 -21.498 -0.257 -2.032 -0.226 "C4'" IC5 18 IC5 "C5'" C10 C 0 1 N N N -95.904 11.501 -21.721 -1.543 -1.840 0.581 "C5'" IC5 19 IC5 "O5'" O5 O 0 1 N N N -95.198 11.474 -20.472 -2.459 -1.038 -0.168 "O5'" IC5 20 IC5 PA P1 P 0 1 N N N -93.886 10.566 -20.346 -3.919 -0.634 0.378 PA IC5 21 IC5 O1A O6 O 0 1 N N N -92.793 11.224 -21.097 -3.787 0.029 1.695 O1A IC5 22 IC5 O2A O7 O 0 1 N N N -94.257 9.166 -20.654 -4.821 -1.959 0.532 O2A IC5 23 IC5 O3A O8 O 0 1 N N N -93.550 10.660 -18.787 -4.621 0.375 -0.663 O3A IC5 24 IC5 PB P2 P 0 1 N N N -94.221 11.489 -17.549 -5.829 1.433 -0.553 PB IC5 25 IC5 O1B O9 O 0 1 N N N -93.193 11.482 -16.440 -5.802 2.413 -1.830 O1B IC5 26 IC5 O2B O10 O 0 1 N N N -95.479 10.734 -17.180 -7.232 0.643 -0.513 O2B IC5 27 IC5 O3B O11 O 0 1 N N N -94.525 12.973 -18.112 -5.676 2.230 0.684 O3B IC5 28 IC5 CM C11 C 0 1 N N N -95.348 5.241 -23.361 2.918 3.416 1.446 CM IC5 29 IC5 H1 H1 H 0 1 N N N -99.741 3.005 -21.576 7.374 1.564 -0.594 H1 IC5 30 IC5 H2 H2 H 0 1 N N N -101.731 5.375 -20.061 7.939 -0.435 -1.669 H2 IC5 31 IC5 H3 H3 H 0 1 N N N -101.539 3.716 -20.521 6.778 -1.625 -1.914 H3 IC5 32 IC5 H4 H4 H 0 1 N N N -95.576 7.858 -22.334 1.081 1.293 0.933 H4 IC5 33 IC5 H5 H5 H 0 1 N N N -99.164 8.861 -21.349 2.164 -1.436 -1.326 H5 IC5 34 IC5 H6 H6 H 0 1 N N N -96.598 8.980 -19.732 1.999 -1.701 1.728 H6 IC5 35 IC5 H7 H7 H 0 1 N N N -98.305 8.979 -18.122 3.280 -3.637 1.169 H7 IC5 36 IC5 H8 H8 H 0 1 N N N -97.042 11.257 -19.363 0.269 -3.273 1.486 H8 IC5 37 IC5 H9 H9 H 0 1 N N N -99.315 11.072 -18.906 1.613 -4.745 0.134 H9 IC5 38 IC5 H10 H10 H 0 1 N N N -98.001 11.817 -21.913 -0.492 -2.443 -1.208 H10 IC5 39 IC5 H11 H11 H 0 1 N N N -95.413 10.824 -22.436 -1.993 -2.811 0.785 H11 IC5 40 IC5 H12 H12 H 0 1 N N N -95.900 12.525 -22.124 -1.310 -1.342 1.522 H12 IC5 41 IC5 H13 H13 H 0 1 N N N -93.703 8.837 -21.352 -4.949 -2.445 -0.294 H13 IC5 42 IC5 H14 H14 H 0 1 N N N -92.904 12.371 -16.270 -6.504 3.078 -1.830 H14 IC5 43 IC5 H15 H15 H 0 1 N N N -96.238 11.280 -17.349 -7.399 0.098 -1.294 H15 IC5 44 IC5 H16 H16 H 0 1 N N N -95.622 4.189 -23.527 3.107 3.318 2.515 H16 IC5 45 IC5 H17 H17 H 0 1 N N N -95.222 5.744 -24.331 3.628 4.122 1.014 H17 IC5 46 IC5 H18 H18 H 0 1 N N N -94.405 5.290 -22.797 1.903 3.780 1.288 H18 IC5 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IC5 CM N7 SING N N 1 IC5 O6 C6 DOUB N N 2 IC5 N7 C8 SING Y N 3 IC5 N7 C5 SING Y N 4 IC5 C8 N9 DOUB Y N 5 IC5 "O4'" "C4'" SING N N 6 IC5 "O4'" "C1'" SING N N 7 IC5 C6 C5 SING N N 8 IC5 C6 N1 SING N N 9 IC5 C5 C4 DOUB Y N 10 IC5 "C5'" "C4'" SING N N 11 IC5 "C5'" "O5'" SING N N 12 IC5 N9 C4 SING Y N 13 IC5 N9 "C1'" SING N N 14 IC5 N1 C2 SING N N 15 IC5 C4 N3 SING N N 16 IC5 "C4'" "C3'" SING N N 17 IC5 "C1'" "C2'" SING N N 18 IC5 O1A PA DOUB N N 19 IC5 C2 N3 DOUB N N 20 IC5 C2 N2 SING N N 21 IC5 O2A PA SING N N 22 IC5 "O5'" PA SING N N 23 IC5 PA O3A SING N N 24 IC5 "C3'" "C2'" SING N N 25 IC5 "C3'" "O3'" SING N N 26 IC5 "C2'" "O2'" SING N N 27 IC5 O3A PB SING N N 28 IC5 O3B PB DOUB N N 29 IC5 PB O2B SING N N 30 IC5 PB O1B SING N N 31 IC5 N1 H1 SING N N 32 IC5 N2 H2 SING N N 33 IC5 N2 H3 SING N N 34 IC5 C8 H4 SING N N 35 IC5 "C1'" H5 SING N N 36 IC5 "C2'" H6 SING N N 37 IC5 "O2'" H7 SING N N 38 IC5 "C3'" H8 SING N N 39 IC5 "O3'" H9 SING N N 40 IC5 "C4'" H10 SING N N 41 IC5 "C5'" H11 SING N N 42 IC5 "C5'" H12 SING N N 43 IC5 O2A H13 SING N N 44 IC5 O1B H14 SING N N 45 IC5 O2B H15 SING N N 46 IC5 CM H16 SING N N 47 IC5 CM H17 SING N N 48 IC5 CM H18 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IC5 InChI InChI 1.06 "InChI=1S/C11H17N5O11P2/c1-15-3-16(8-5(15)9(19)14-11(12)13-8)10-7(18)6(17)4(26-10)2-25-29(23,24)27-28(20,21)22/h3-4,6-7,10,17-18H,2H2,1H3,(H5-,12,13,14,19,20,21,22,23,24)/p+1/t4-,6-,7-,10-/m1/s1" IC5 InChIKey InChI 1.06 SBASPRRECYVBRF-KQYNXXCUSA-O IC5 SMILES_CANONICAL CACTVS 3.385 "Cn1c[n+]([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O)c3N=C(N)NC(=O)c13" IC5 SMILES CACTVS 3.385 "Cn1c[n+]([CH]2O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)c3N=C(N)NC(=O)c13" IC5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1c[n+](c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O" IC5 SMILES "OpenEye OEToolkits" 2.0.7 "Cn1c[n+](c2c1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id IC5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IC5 "Create component" 2022-03-09 PDBE IC5 "Initial release" 2022-05-11 RCSB IC5 "Modify descriptor" 2022-08-22 RCSB #