data_ID2 # _chem_comp.id ID2 _chem_comp.name 5-IODODEOXYURIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H11 I N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 354.099 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ID2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KI7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ID2 C2 C2 C 0 1 N N N 22.285 95.364 44.707 1.375 -0.045 0.922 C2 ID2 1 ID2 C4 C4 C 0 1 N N N 22.769 92.982 44.255 1.650 0.148 -1.390 C4 ID2 2 ID2 C5 C5 C 0 1 N N N 21.303 92.809 44.147 0.252 -0.003 -1.557 C5 ID2 3 ID2 C6 C6 C 0 1 N N N 20.425 93.897 44.322 -0.525 -0.174 -0.466 C6 ID2 4 ID2 O2 O2 O 0 1 N N N 22.769 96.456 44.927 1.863 -0.068 2.036 O2 ID2 5 ID2 "O5'" O5* O 0 1 N N N 17.370 94.389 44.310 -0.799 2.429 5.185 "O5'" ID2 6 ID2 "C5'" C5* C 0 1 N N N 16.969 95.103 45.402 -0.107 1.179 5.195 "C5'" ID2 7 ID2 "C4'" C4* C 0 1 N N R 17.857 96.292 45.558 -0.763 0.225 4.194 "C4'" ID2 8 ID2 "O4'" O4* O 0 1 N N N 19.199 95.866 45.810 -0.641 0.736 2.850 "O4'" ID2 9 ID2 "C1'" C1* C 0 1 N N R 20.065 96.308 44.831 -0.796 -0.381 1.960 "C1'" ID2 10 ID2 N1 N1 N 0 1 N N N 20.921 95.175 44.613 0.047 -0.196 0.776 N1 ID2 11 ID2 N3 N3 N 0 1 N N N 23.133 94.287 44.544 2.175 0.120 -0.148 N3 ID2 12 ID2 O4 O4 O 0 1 N N N 23.658 92.124 44.102 2.372 0.304 -2.358 O4 ID2 13 ID2 I I I 0 1 N N N 20.569 90.902 43.634 -0.597 0.035 -3.472 I ID2 14 ID2 "C2'" C2* C 0 1 N N N 19.099 96.564 43.734 -0.357 -1.642 2.728 "C2'" ID2 15 ID2 "C3'" C3* C 0 1 N N S 17.887 97.126 44.400 0.000 -1.122 4.143 "C3'" ID2 16 ID2 "O3'" O3* O 0 1 N N N 18.254 98.372 44.787 -0.468 -2.020 5.151 "O3'" ID2 17 ID2 H6 H6 H 0 1 N N N 19.336 93.746 44.230 -1.593 -0.292 -0.575 H6 ID2 18 ID2 "HO5'" *HO5 H 0 0 N N N 16.804 93.632 44.210 -0.356 2.999 5.828 "HO5'" ID2 19 ID2 "H5'1" 1H5* H 0 0 N N N 15.890 95.381 45.354 0.933 1.338 4.916 "H5'1" ID2 20 ID2 "H5'2" 2H5* H 0 0 N N N 16.928 94.479 46.325 -0.154 0.745 6.194 "H5'2" ID2 21 ID2 "H4'" H4* H 0 1 N N N 17.438 96.878 46.408 -1.810 0.063 4.450 "H4'" ID2 22 ID2 "H1'" H1* H 0 1 N N N 20.714 97.198 45.003 -1.840 -0.474 1.660 "H1'" ID2 23 ID2 HN3 HN3 H 0 1 N N N 24.130 94.474 44.647 3.131 0.224 -0.025 HN3 ID2 24 ID2 "H2'1" 1H2* H 0 0 N N N 19.504 97.208 42.919 -1.176 -2.359 2.784 "H2'1" ID2 25 ID2 "H2'2" 2H2* H 0 0 N N N 18.890 95.670 43.100 0.514 -2.094 2.254 "H2'2" ID2 26 ID2 "H3'" H3* H 0 1 N N N 16.936 97.163 43.817 1.074 -0.961 4.238 "H3'" ID2 27 ID2 "HO3'" *HO3 H 0 0 N N N 18.274 98.927 44.016 -0.020 -2.864 5.004 "HO3'" ID2 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ID2 C2 O2 DOUB N N 1 ID2 C2 N1 SING N N 2 ID2 C2 N3 SING N N 3 ID2 C4 C5 SING N N 4 ID2 C4 N3 SING N N 5 ID2 C4 O4 DOUB N N 6 ID2 C5 C6 DOUB N N 7 ID2 C5 I SING N N 8 ID2 C6 N1 SING N N 9 ID2 C6 H6 SING N N 10 ID2 "O5'" "C5'" SING N N 11 ID2 "O5'" "HO5'" SING N N 12 ID2 "C5'" "C4'" SING N N 13 ID2 "C5'" "H5'1" SING N N 14 ID2 "C5'" "H5'2" SING N N 15 ID2 "C4'" "O4'" SING N N 16 ID2 "C4'" "C3'" SING N N 17 ID2 "C4'" "H4'" SING N N 18 ID2 "O4'" "C1'" SING N N 19 ID2 "C1'" N1 SING N N 20 ID2 "C1'" "C2'" SING N N 21 ID2 "C1'" "H1'" SING N N 22 ID2 N3 HN3 SING N N 23 ID2 "C2'" "C3'" SING N N 24 ID2 "C2'" "H2'1" SING N N 25 ID2 "C2'" "H2'2" SING N N 26 ID2 "C3'" "O3'" SING N N 27 ID2 "C3'" "H3'" SING N N 28 ID2 "O3'" "HO3'" SING N N 29 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ID2 SMILES ACDLabs 10.04 "IC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)CO" ID2 SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(I)C(=O)NC2=O" ID2 SMILES CACTVS 3.341 "OC[CH]1O[CH](C[CH]1O)N2C=C(I)C(=O)NC2=O" ID2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)I)CO)O" ID2 SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=C(C(=O)NC2=O)I)CO)O" ID2 InChI InChI 1.03 "InChI=1S/C9H11IN2O5/c10-4-2-12(9(16)11-8(4)15)7-1-5(14)6(3-13)17-7/h2,5-7,13-14H,1,3H2,(H,11,15,16)/t5-,6+,7+/m0/s1" ID2 InChIKey InChI 1.03 XQFRJNBWHJMXHO-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ID2 "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5-iodouridine" ID2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-iodo-pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ID2 "Create component" 1999-07-08 RCSB ID2 "Modify descriptor" 2011-06-04 RCSB #