data_IDC
#

_chem_comp.id                                   IDC
_chem_comp.name                                 "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C14 H22 N2 O9"
_chem_comp.mon_nstd_parent_comp_id              BGC
_chem_comp.pdbx_synonyms                        
;5-HYDROXYMETHYL-5,6,7,8-TETRAHYDRO-IMIDAZO[1,2-A]PYRIDIN-6YL-7,8-DIOL-GLUCOPYRANOSIDE; IMIDAZOLE-DERIVED CELLOBIOSE;
(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucoside;
(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl D-glucoside;
(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-08-03
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       362.332
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    IDC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       8A3H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  IDC  "5-HYDROXYMETHYL-5,6,7,8-TETRAHYDRO-IMIDAZO[1,2-A]PYRIDIN-6YL-7,8-DIOL-GLUCOPYRANOSIDE"                        PDB  ?  
2  IDC  "IMIDAZOLE-DERIVED CELLOBIOSE"                                                                                 PDB  ?  
3  IDC  "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucoside"  PDB  ?  
4  IDC  "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl D-glucoside"       PDB  ?  
5  IDC  "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl glucoside"         PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IDC  C1    C1A   C  0  1  N  N  R  60.721  46.841  36.907  -0.465   0.342  -1.345  C1    IDC   1  
IDC  C2    C2A   C  0  1  N  N  R  61.052  48.256  36.513  -1.218   0.930  -2.542  C2    IDC   2  
IDC  C3    C3A   C  0  1  N  N  S  60.462  49.215  37.534  -1.076  -0.019  -3.736  C3    IDC   3  
IDC  C4    C4A   C  0  1  N  N  S  58.958  48.989  37.638   0.413  -0.290  -3.972  C4    IDC   4  
IDC  C5    C5A   C  0  1  N  N  R  58.726  47.506  38.005   1.042  -0.787  -2.668  C5    IDC   5  
IDC  C6    C6A   C  0  1  N  N  N  57.296  47.088  38.084   2.522  -1.094  -2.902  C6    IDC   6  
IDC  O2    O2A   O  0  1  N  N  N  62.495  48.360  36.468  -2.599   1.081  -2.210  O2    IDC   7  
IDC  O3    O3A   O  0  1  N  N  N  60.697  50.580  37.137  -1.646   0.584  -4.899  O3    IDC   8  
IDC  O4    O4A   O  0  1  N  N  N  58.412  49.829  38.667   0.564  -1.286  -4.985  O4    IDC   9  
IDC  O5    O5A   O  0  1  N  N  N  59.305  46.687  36.951   0.919   0.215  -1.661  O5    IDC  10  
IDC  O6    O6A   O  0  1  N  N  N  56.654  47.265  36.814   3.109  -1.561  -1.685  O6    IDC  11  
IDC  C1B   C1B   C  0  1  Y  N  N  61.624  41.913  36.428   0.592  -0.185   3.514  C1B   IDC  12  
IDC  C2B   C2B   C  0  1  N  N  S  60.548  42.312  35.453   1.659   0.471   2.670  C2B   IDC  13  
IDC  C3B   C3B   C  0  1  N  N  R  60.687  43.783  35.039   0.966   1.328   1.603  C3B   IDC  14  
IDC  C4B   C4B   C  0  1  N  N  R  61.199  44.590  36.252  -0.122   0.497   0.917  C4B   IDC  15  
IDC  C5B   C5B   C  0  1  N  N  R  62.623  44.186  36.581  -1.268   0.243   1.902  C5B   IDC  16  
IDC  C6B   C6B   C  0  1  N  N  N  63.262  44.963  37.759  -2.238  -0.781   1.310  C6B   IDC  17  
IDC  O2B   O2B   O  0  1  N  N  N  60.497  41.431  34.325   2.483   1.299   3.492  O2B   IDC  18  
IDC  O3B   O3B   O  0  1  N  N  N  59.432  44.203  34.600   1.926   1.751   0.632  O3B   IDC  19  
IDC  O1    O4B   O  0  1  N  N  N  61.181  45.991  35.883  -0.618   1.207  -0.218  O1    IDC  20  
IDC  N1B   N1B   N  0  1  Y  N  N  62.555  42.754  36.935  -0.709  -0.275   3.153  N1B   IDC  21  
IDC  O6B   O6B   O  0  1  N  N  N  62.441  44.828  38.946  -3.297  -1.025   2.238  O6B   IDC  22  
IDC  N2B   N2B   N  0  1  Y  N  N  61.779  40.716  36.989   0.740  -0.748   4.677  N2B   IDC  23  
IDC  C7B   C7B   C  0  1  Y  N  N  62.854  40.764  37.869  -0.447  -1.212   5.098  C7B   IDC  24  
IDC  C8B   C8B   C  0  1  Y  N  N  63.315  42.040  37.841  -1.367  -0.923   4.155  C8B   IDC  25  
IDC  H1    HC1A  H  0  1  N  N  N  61.182  46.605  37.894  -0.875  -0.639  -1.107  H1    IDC  26  
IDC  H2    HC2A  H  0  1  N  N  N  60.623  48.517  35.517  -0.795   1.902  -2.796  H2    IDC  27  
IDC  H3    HC3A  H  0  1  N  N  N  60.949  49.026  38.518  -1.590  -0.956  -3.522  H3    IDC  28  
IDC  H4    HC4A  H  0  1  N  N  N  58.460  49.236  36.671   0.906   0.629  -4.288  H4    IDC  29  
IDC  H5    HC5A  H  0  1  N  N  N  59.181  47.376  39.014   0.531  -1.693  -2.341  H5    IDC  30  
IDC  H61   HCA1  H  0  1  N  N  N  57.188  46.044  38.462   3.034  -0.189  -3.228  H61   IDC  31  
IDC  H62   HCA2  H  0  1  N  N  N  56.752  47.617  38.901   2.617  -1.862  -3.669  H62   IDC  32  
IDC  HO2   HO2A  H  0  1  N  Y  N  62.703  49.252  36.219  -2.641   1.680  -1.451  HO2   IDC  33  
IDC  HO3   HO3A  H  0  1  N  Y  N  60.328  51.179  37.775  -2.579   0.748  -4.701  HO3   IDC  34  
IDC  HO4   HO4A  H  0  1  N  Y  N  57.474  49.688  38.731   0.148  -0.936  -5.785  HO4   IDC  35  
IDC  HO6   HO6A  H  0  1  N  Y  N  55.743  46.998  36.864   4.040  -1.743  -1.876  HO6   IDC  36  
IDC  HC2B  HC2B  H  0  0  N  N  N  59.567  42.212  35.975   2.269  -0.293   2.189  HC2B  IDC  37  
IDC  HC3B  HC3B  H  0  0  N  N  N  61.421  43.933  34.213   0.515   2.201   2.074  HC3B  IDC  38  
IDC  HC4B  HC4B  H  0  0  N  N  N  60.555  44.397  37.142   0.297  -0.455   0.595  HC4B  IDC  39  
IDC  HC5B  HC5B  H  0  0  N  N  N  63.267  44.413  35.699  -1.796   1.176   2.097  HC5B  IDC  40  
IDC  HCB1  HCB1  H  0  0  N  N  N  64.316  44.650  37.942  -2.653  -0.393   0.380  HCB1  IDC  41  
IDC  HCB2  HCB2  H  0  0  N  N  N  63.451  46.031  37.501  -1.707  -1.712   1.112  HCB2  IDC  42  
IDC  HO2B  HO2B  H  0  0  N  N  N  59.818  41.682  33.709   2.897   0.719   4.147  HO2B  IDC  43  
IDC  HO3B  HO3B  H  0  0  N  N  N  59.518  45.113  34.343   2.591   2.269   1.105  HO3B  IDC  44  
IDC  HO6B  HO6B  H  0  0  N  N  N  62.832  45.304  39.668  -3.885  -1.674   1.828  HO6B  IDC  45  
IDC  HC7B  HC7B  H  0  0  N  N  N  63.265  39.941  38.477  -0.633  -1.726   6.030  HC7B  IDC  46  
IDC  HC8B  HC8B  H  0  0  N  N  N  64.153  42.426  38.444  -2.420  -1.161   4.188  HC8B  IDC  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IDC  C1   C2    SING  N  N   1  
IDC  C1   O5    SING  N  N   2  
IDC  C1   O1    SING  N  N   3  
IDC  C1   H1    SING  N  N   4  
IDC  C2   C3    SING  N  N   5  
IDC  C2   O2    SING  N  N   6  
IDC  C2   H2    SING  N  N   7  
IDC  C3   C4    SING  N  N   8  
IDC  C3   O3    SING  N  N   9  
IDC  C3   H3    SING  N  N  10  
IDC  C4   C5    SING  N  N  11  
IDC  C4   O4    SING  N  N  12  
IDC  C4   H4    SING  N  N  13  
IDC  C5   C6    SING  N  N  14  
IDC  C5   O5    SING  N  N  15  
IDC  C5   H5    SING  N  N  16  
IDC  C6   O6    SING  N  N  17  
IDC  C6   H61   SING  N  N  18  
IDC  C6   H62   SING  N  N  19  
IDC  O2   HO2   SING  N  N  20  
IDC  O3   HO3   SING  N  N  21  
IDC  O4   HO4   SING  N  N  22  
IDC  O6   HO6   SING  N  N  23  
IDC  C1B  C2B   SING  N  N  24  
IDC  C1B  N1B   SING  Y  N  25  
IDC  C1B  N2B   DOUB  Y  N  26  
IDC  C2B  C3B   SING  N  N  27  
IDC  C2B  O2B   SING  N  N  28  
IDC  C2B  HC2B  SING  N  N  29  
IDC  C3B  C4B   SING  N  N  30  
IDC  C3B  O3B   SING  N  N  31  
IDC  C3B  HC3B  SING  N  N  32  
IDC  C4B  C5B   SING  N  N  33  
IDC  C4B  O1    SING  N  N  34  
IDC  C4B  HC4B  SING  N  N  35  
IDC  C5B  C6B   SING  N  N  36  
IDC  C5B  N1B   SING  N  N  37  
IDC  C5B  HC5B  SING  N  N  38  
IDC  C6B  O6B   SING  N  N  39  
IDC  C6B  HCB1  SING  N  N  40  
IDC  C6B  HCB2  SING  N  N  41  
IDC  O2B  HO2B  SING  N  N  42  
IDC  O3B  HO3B  SING  N  N  43  
IDC  N1B  C8B   SING  Y  N  44  
IDC  O6B  HO6B  SING  N  N  45  
IDC  N2B  C7B   SING  Y  N  46  
IDC  C7B  C8B   DOUB  Y  N  47  
IDC  C7B  HC7B  SING  N  N  48  
IDC  C8B  HC8B  SING  N  N  49  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IDC  SMILES            ACDLabs               10.04  "O(C2C(O)C(O)c1nccn1C2CO)C3OC(C(O)C(O)C3O)CO"  
IDC  SMILES_CANONICAL  CACTVS                3.341  "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](O)c3nccn3[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O"  
IDC  SMILES            CACTVS                3.341  "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)c3nccn3[CH]2CO)[CH](O)[CH](O)[CH]1O"  
IDC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1cn2c(n1)[C@@H]([C@H]([C@@H]([C@H]2CO)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O"  
IDC  SMILES            "OpenEye OEToolkits"  1.5.0  "c1cn2c(n1)C(C(C(C2CO)OC3C(C(C(C(O3)CO)O)O)O)O)O"  
IDC  InChI             InChI                 1.03   "InChI=1S/C14H22N2O9/c17-3-5-12(9(21)10(22)13-15-1-2-16(5)13)25-14-11(23)8(20)7(19)6(4-18)24-14/h1-2,5-12,14,17-23H,3-4H2/t5-,6-,7-,8+,9-,10-,11-,12-,14+/m1/s1"  
IDC  InChIKey          InChI                 1.03   CSXOUJBOYXGFCL-OFKZETBZSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IDC  "SYSTEMATIC NAME"  ACDLabs               10.04  "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucopyranoside"  
IDC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  
;(2R,3R,4S,5S,6R)-2-[[(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[2,1-f]pyridin-6-yl]oxy]-6-
(hydroxymethyl)oxane-3,4,5-triol
;
  
#
_pdbx_chem_comp_related.comp_id            IDC
_pdbx_chem_comp_related.related_comp_id    BGC
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  IDC  C1   BGC  C1   "Carbohydrate core"  
 2  IDC  C2   BGC  C2   "Carbohydrate core"  
 3  IDC  C3   BGC  C3   "Carbohydrate core"  
 4  IDC  C4   BGC  C4   "Carbohydrate core"  
 5  IDC  C5   BGC  C5   "Carbohydrate core"  
 6  IDC  C6   BGC  C6   "Carbohydrate core"  
 7  IDC  O2   BGC  O2   "Carbohydrate core"  
 8  IDC  O3   BGC  O3   "Carbohydrate core"  
 9  IDC  O4   BGC  O4   "Carbohydrate core"  
10  IDC  O1   BGC  O1   "Carbohydrate core"  
11  IDC  O5   BGC  O5   "Carbohydrate core"  
12  IDC  O6   BGC  O6   "Carbohydrate core"  
13  IDC  H1   BGC  H1   "Carbohydrate core"  
14  IDC  H2   BGC  H2   "Carbohydrate core"  
15  IDC  H3   BGC  H3   "Carbohydrate core"  
16  IDC  H4   BGC  H4   "Carbohydrate core"  
17  IDC  H5   BGC  H5   "Carbohydrate core"  
18  IDC  H61  BGC  H61  "Carbohydrate core"  
19  IDC  H62  BGC  H62  "Carbohydrate core"  
20  IDC  HO2  BGC  HO2  "Carbohydrate core"  
21  IDC  HO3  BGC  HO3  "Carbohydrate core"  
22  IDC  HO4  BGC  HO4  "Carbohydrate core"  
23  IDC  HO6  BGC  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
IDC  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
IDC  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
IDC  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
IDC  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IDC  "Create component"          1999-08-03  EBI   
IDC  "Modify descriptor"         2011-06-04  RCSB  
IDC  "Other modification"        2020-07-03  RCSB  
IDC  "Modify parent residue"     2020-07-17  RCSB  
IDC  "Modify name"               2020-07-17  RCSB  
IDC  "Modify synonyms"           2020-07-17  RCSB  
IDC  "Modify internal type"      2020-07-17  RCSB  
IDC  "Modify linking type"       2020-07-17  RCSB  
IDC  "Modify atom id"            2020-07-17  RCSB  
IDC  "Modify component atom id"  2020-07-17  RCSB  
IDC  "Modify leaving atom flag"  2020-07-17  RCSB  
##