data_IDC # _chem_comp.id IDC _chem_comp.name "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H22 N2 O9" _chem_comp.mon_nstd_parent_comp_id BGC _chem_comp.pdbx_synonyms ;5-HYDROXYMETHYL-5,6,7,8-TETRAHYDRO-IMIDAZO[1,2-A]PYRIDIN-6YL-7,8-DIOL-GLUCOPYRANOSIDE; IMIDAZOLE-DERIVED CELLOBIOSE; (5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucoside; (5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl D-glucoside; (5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-08-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 362.332 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IDC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8A3H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 IDC "5-HYDROXYMETHYL-5,6,7,8-TETRAHYDRO-IMIDAZO[1,2-A]PYRIDIN-6YL-7,8-DIOL-GLUCOPYRANOSIDE" PDB ? 2 IDC "IMIDAZOLE-DERIVED CELLOBIOSE" PDB ? 3 IDC "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucoside" PDB ? 4 IDC "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl D-glucoside" PDB ? 5 IDC "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IDC C1 C1A C 0 1 N N R 60.721 46.841 36.907 -0.465 0.342 -1.345 C1 IDC 1 IDC C2 C2A C 0 1 N N R 61.052 48.256 36.513 -1.218 0.930 -2.542 C2 IDC 2 IDC C3 C3A C 0 1 N N S 60.462 49.215 37.534 -1.076 -0.019 -3.736 C3 IDC 3 IDC C4 C4A C 0 1 N N S 58.958 48.989 37.638 0.413 -0.290 -3.972 C4 IDC 4 IDC C5 C5A C 0 1 N N R 58.726 47.506 38.005 1.042 -0.787 -2.668 C5 IDC 5 IDC C6 C6A C 0 1 N N N 57.296 47.088 38.084 2.522 -1.094 -2.902 C6 IDC 6 IDC O2 O2A O 0 1 N N N 62.495 48.360 36.468 -2.599 1.081 -2.210 O2 IDC 7 IDC O3 O3A O 0 1 N N N 60.697 50.580 37.137 -1.646 0.584 -4.899 O3 IDC 8 IDC O4 O4A O 0 1 N N N 58.412 49.829 38.667 0.564 -1.286 -4.985 O4 IDC 9 IDC O5 O5A O 0 1 N N N 59.305 46.687 36.951 0.919 0.215 -1.661 O5 IDC 10 IDC O6 O6A O 0 1 N N N 56.654 47.265 36.814 3.109 -1.561 -1.685 O6 IDC 11 IDC C1B C1B C 0 1 Y N N 61.624 41.913 36.428 0.592 -0.185 3.514 C1B IDC 12 IDC C2B C2B C 0 1 N N S 60.548 42.312 35.453 1.659 0.471 2.670 C2B IDC 13 IDC C3B C3B C 0 1 N N R 60.687 43.783 35.039 0.966 1.328 1.603 C3B IDC 14 IDC C4B C4B C 0 1 N N R 61.199 44.590 36.252 -0.122 0.497 0.917 C4B IDC 15 IDC C5B C5B C 0 1 N N R 62.623 44.186 36.581 -1.268 0.243 1.902 C5B IDC 16 IDC C6B C6B C 0 1 N N N 63.262 44.963 37.759 -2.238 -0.781 1.310 C6B IDC 17 IDC O2B O2B O 0 1 N N N 60.497 41.431 34.325 2.483 1.299 3.492 O2B IDC 18 IDC O3B O3B O 0 1 N N N 59.432 44.203 34.600 1.926 1.751 0.632 O3B IDC 19 IDC O1 O4B O 0 1 N N N 61.181 45.991 35.883 -0.618 1.207 -0.218 O1 IDC 20 IDC N1B N1B N 0 1 Y N N 62.555 42.754 36.935 -0.709 -0.275 3.153 N1B IDC 21 IDC O6B O6B O 0 1 N N N 62.441 44.828 38.946 -3.297 -1.025 2.238 O6B IDC 22 IDC N2B N2B N 0 1 Y N N 61.779 40.716 36.989 0.740 -0.748 4.677 N2B IDC 23 IDC C7B C7B C 0 1 Y N N 62.854 40.764 37.869 -0.447 -1.212 5.098 C7B IDC 24 IDC C8B C8B C 0 1 Y N N 63.315 42.040 37.841 -1.367 -0.923 4.155 C8B IDC 25 IDC H1 HC1A H 0 1 N N N 61.182 46.605 37.894 -0.875 -0.639 -1.107 H1 IDC 26 IDC H2 HC2A H 0 1 N N N 60.623 48.517 35.517 -0.795 1.902 -2.796 H2 IDC 27 IDC H3 HC3A H 0 1 N N N 60.949 49.026 38.518 -1.590 -0.956 -3.522 H3 IDC 28 IDC H4 HC4A H 0 1 N N N 58.460 49.236 36.671 0.906 0.629 -4.288 H4 IDC 29 IDC H5 HC5A H 0 1 N N N 59.181 47.376 39.014 0.531 -1.693 -2.341 H5 IDC 30 IDC H61 HCA1 H 0 1 N N N 57.188 46.044 38.462 3.034 -0.189 -3.228 H61 IDC 31 IDC H62 HCA2 H 0 1 N N N 56.752 47.617 38.901 2.617 -1.862 -3.669 H62 IDC 32 IDC HO2 HO2A H 0 1 N Y N 62.703 49.252 36.219 -2.641 1.680 -1.451 HO2 IDC 33 IDC HO3 HO3A H 0 1 N Y N 60.328 51.179 37.775 -2.579 0.748 -4.701 HO3 IDC 34 IDC HO4 HO4A H 0 1 N Y N 57.474 49.688 38.731 0.148 -0.936 -5.785 HO4 IDC 35 IDC HO6 HO6A H 0 1 N Y N 55.743 46.998 36.864 4.040 -1.743 -1.876 HO6 IDC 36 IDC HC2B HC2B H 0 0 N N N 59.567 42.212 35.975 2.269 -0.293 2.189 HC2B IDC 37 IDC HC3B HC3B H 0 0 N N N 61.421 43.933 34.213 0.515 2.201 2.074 HC3B IDC 38 IDC HC4B HC4B H 0 0 N N N 60.555 44.397 37.142 0.297 -0.455 0.595 HC4B IDC 39 IDC HC5B HC5B H 0 0 N N N 63.267 44.413 35.699 -1.796 1.176 2.097 HC5B IDC 40 IDC HCB1 HCB1 H 0 0 N N N 64.316 44.650 37.942 -2.653 -0.393 0.380 HCB1 IDC 41 IDC HCB2 HCB2 H 0 0 N N N 63.451 46.031 37.501 -1.707 -1.712 1.112 HCB2 IDC 42 IDC HO2B HO2B H 0 0 N N N 59.818 41.682 33.709 2.897 0.719 4.147 HO2B IDC 43 IDC HO3B HO3B H 0 0 N N N 59.518 45.113 34.343 2.591 2.269 1.105 HO3B IDC 44 IDC HO6B HO6B H 0 0 N N N 62.832 45.304 39.668 -3.885 -1.674 1.828 HO6B IDC 45 IDC HC7B HC7B H 0 0 N N N 63.265 39.941 38.477 -0.633 -1.726 6.030 HC7B IDC 46 IDC HC8B HC8B H 0 0 N N N 64.153 42.426 38.444 -2.420 -1.161 4.188 HC8B IDC 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IDC C1 C2 SING N N 1 IDC C1 O5 SING N N 2 IDC C1 O1 SING N N 3 IDC C1 H1 SING N N 4 IDC C2 C3 SING N N 5 IDC C2 O2 SING N N 6 IDC C2 H2 SING N N 7 IDC C3 C4 SING N N 8 IDC C3 O3 SING N N 9 IDC C3 H3 SING N N 10 IDC C4 C5 SING N N 11 IDC C4 O4 SING N N 12 IDC C4 H4 SING N N 13 IDC C5 C6 SING N N 14 IDC C5 O5 SING N N 15 IDC C5 H5 SING N N 16 IDC C6 O6 SING N N 17 IDC C6 H61 SING N N 18 IDC C6 H62 SING N N 19 IDC O2 HO2 SING N N 20 IDC O3 HO3 SING N N 21 IDC O4 HO4 SING N N 22 IDC O6 HO6 SING N N 23 IDC C1B C2B SING N N 24 IDC C1B N1B SING Y N 25 IDC C1B N2B DOUB Y N 26 IDC C2B C3B SING N N 27 IDC C2B O2B SING N N 28 IDC C2B HC2B SING N N 29 IDC C3B C4B SING N N 30 IDC C3B O3B SING N N 31 IDC C3B HC3B SING N N 32 IDC C4B C5B SING N N 33 IDC C4B O1 SING N N 34 IDC C4B HC4B SING N N 35 IDC C5B C6B SING N N 36 IDC C5B N1B SING N N 37 IDC C5B HC5B SING N N 38 IDC C6B O6B SING N N 39 IDC C6B HCB1 SING N N 40 IDC C6B HCB2 SING N N 41 IDC O2B HO2B SING N N 42 IDC O3B HO3B SING N N 43 IDC N1B C8B SING Y N 44 IDC O6B HO6B SING N N 45 IDC N2B C7B SING Y N 46 IDC C7B C8B DOUB Y N 47 IDC C7B HC7B SING N N 48 IDC C8B HC8B SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IDC SMILES ACDLabs 10.04 "O(C2C(O)C(O)c1nccn1C2CO)C3OC(C(O)C(O)C3O)CO" IDC SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](O[C@H]2[C@H](O)[C@@H](O)c3nccn3[C@@H]2CO)[C@H](O)[C@@H](O)[C@@H]1O" IDC SMILES CACTVS 3.341 "OC[CH]1O[CH](O[CH]2[CH](O)[CH](O)c3nccn3[CH]2CO)[CH](O)[CH](O)[CH]1O" IDC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cn2c(n1)[C@@H]([C@H]([C@@H]([C@H]2CO)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O" IDC SMILES "OpenEye OEToolkits" 1.5.0 "c1cn2c(n1)C(C(C(C2CO)OC3C(C(C(C(O3)CO)O)O)O)O)O" IDC InChI InChI 1.03 "InChI=1S/C14H22N2O9/c17-3-5-12(9(21)10(22)13-15-1-2-16(5)13)25-14-11(23)8(20)7(19)6(4-18)24-14/h1-2,5-12,14,17-23H,3-4H2/t5-,6-,7-,8+,9-,10-,11-,12-,14+/m1/s1" IDC InChIKey InChI 1.03 CSXOUJBOYXGFCL-OFKZETBZSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IDC "SYSTEMATIC NAME" ACDLabs 10.04 "(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-6-yl beta-D-glucopyranoside" IDC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 ;(2R,3R,4S,5S,6R)-2-[[(5R,6R,7R,8S)-7,8-dihydroxy-5-(hydroxymethyl)-5,6,7,8-tetrahydroimidazo[2,1-f]pyridin-6-yl]oxy]-6- (hydroxymethyl)oxane-3,4,5-triol ; # _pdbx_chem_comp_related.comp_id IDC _pdbx_chem_comp_related.related_comp_id BGC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 IDC C1 BGC C1 "Carbohydrate core" 2 IDC C2 BGC C2 "Carbohydrate core" 3 IDC C3 BGC C3 "Carbohydrate core" 4 IDC C4 BGC C4 "Carbohydrate core" 5 IDC C5 BGC C5 "Carbohydrate core" 6 IDC C6 BGC C6 "Carbohydrate core" 7 IDC O2 BGC O2 "Carbohydrate core" 8 IDC O3 BGC O3 "Carbohydrate core" 9 IDC O4 BGC O4 "Carbohydrate core" 10 IDC O1 BGC O1 "Carbohydrate core" 11 IDC O5 BGC O5 "Carbohydrate core" 12 IDC O6 BGC O6 "Carbohydrate core" 13 IDC H1 BGC H1 "Carbohydrate core" 14 IDC H2 BGC H2 "Carbohydrate core" 15 IDC H3 BGC H3 "Carbohydrate core" 16 IDC H4 BGC H4 "Carbohydrate core" 17 IDC H5 BGC H5 "Carbohydrate core" 18 IDC H61 BGC H61 "Carbohydrate core" 19 IDC H62 BGC H62 "Carbohydrate core" 20 IDC HO2 BGC HO2 "Carbohydrate core" 21 IDC HO3 BGC HO3 "Carbohydrate core" 22 IDC HO4 BGC HO4 "Carbohydrate core" 23 IDC HO6 BGC HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support IDC "CARBOHYDRATE ISOMER" D PDB ? IDC "CARBOHYDRATE RING" pyranose PDB ? IDC "CARBOHYDRATE ANOMER" beta PDB ? IDC "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IDC "Create component" 1999-08-03 EBI IDC "Modify descriptor" 2011-06-04 RCSB IDC "Other modification" 2020-07-03 RCSB IDC "Modify parent residue" 2020-07-17 RCSB IDC "Modify name" 2020-07-17 RCSB IDC "Modify synonyms" 2020-07-17 RCSB IDC "Modify internal type" 2020-07-17 RCSB IDC "Modify linking type" 2020-07-17 RCSB IDC "Modify atom id" 2020-07-17 RCSB IDC "Modify component atom id" 2020-07-17 RCSB IDC "Modify leaving atom flag" 2020-07-17 RCSB ##