data_IDP # _chem_comp.id IDP _chem_comp.name "INOSINE-5'-DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H14 N4 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 428.186 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IDP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MRD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IDP PB PB P 0 1 N N N -16.575 15.386 55.298 -1.115 0.241 -5.720 PB IDP 1 IDP O1B O1B O 0 1 N N N -15.525 14.763 56.160 -1.680 -1.113 -5.534 O1B IDP 2 IDP O2B O2B O 0 1 N N N -17.704 14.459 54.989 -2.135 1.134 -6.588 O2B IDP 3 IDP O3B O3B O 0 1 N N N -17.031 16.728 55.778 0.294 0.133 -6.491 O3B IDP 4 IDP PA PA P 0 1 N N R -16.365 15.995 52.406 0.136 -0.010 -3.472 PA IDP 5 IDP O1A O1A O 0 1 N N N -15.553 15.272 51.390 1.412 -0.105 -4.215 O1A IDP 6 IDP O2A O2A O 0 1 N N N -16.487 17.467 52.397 -0.499 -1.480 -3.307 O2A IDP 7 IDP O3A O3A O 0 1 N N N -15.832 15.623 53.870 -0.888 0.930 -4.282 O3A IDP 8 IDP "O5'" O5* O 0 1 N N N -17.836 15.357 52.230 0.409 0.621 -2.016 "O5'" IDP 9 IDP "C5'" C5* C 0 1 N N N -19.031 16.137 52.019 1.320 -0.253 -1.350 "C5'" IDP 10 IDP "C4'" C4* C 0 1 N N R -19.686 15.991 50.642 1.623 0.292 0.046 "C4'" IDP 11 IDP "O4'" O4* O 0 1 N N N -19.780 17.086 49.726 0.413 0.355 0.835 "O4'" IDP 12 IDP "C3'" C3* C 0 1 N N S -19.678 14.741 49.793 2.546 -0.674 0.821 "C3'" IDP 13 IDP "O3'" O3* O 0 1 N N N -20.936 14.454 49.198 3.903 -0.233 0.752 "O3'" IDP 14 IDP "C2'" C2* C 0 1 N N R -18.731 15.190 48.732 2.028 -0.607 2.275 "C2'" IDP 15 IDP "O2'" O2* O 0 1 N N N -18.767 14.423 47.540 3.051 -0.126 3.149 "O2'" IDP 16 IDP "C1'" C1* C 0 1 N N R -18.931 16.690 48.649 0.853 0.393 2.210 "C1'" IDP 17 IDP N9 N9 N 0 1 Y N N -17.682 17.448 48.524 -0.225 -0.028 3.106 N9 IDP 18 IDP C8 C8 C 0 1 Y N N -16.468 16.985 48.856 -1.269 -0.842 2.782 C8 IDP 19 IDP N7 N7 N 0 1 Y N N -15.517 17.797 48.408 -2.038 -1.006 3.820 N7 IDP 20 IDP C5 C5 C 0 1 Y N N -16.152 18.799 47.806 -1.534 -0.309 4.865 C5 IDP 21 IDP C6 C6 C 0 1 N N N -15.585 20.024 47.113 -1.933 -0.119 6.212 C6 IDP 22 IDP O6 O6 O 0 1 N N N -14.403 20.317 46.934 -2.940 -0.649 6.648 O6 IDP 23 IDP N1 N1 N 0 1 N N N -16.617 20.822 46.672 -1.166 0.666 7.000 N1 IDP 24 IDP C2 C2 C 0 1 N N N -17.957 20.596 46.844 -0.046 1.252 6.504 C2 IDP 25 IDP N3 N3 N 0 1 N N N -18.407 19.476 47.375 0.333 1.086 5.268 N3 IDP 26 IDP C4 C4 C 0 1 Y N N -17.530 18.589 47.869 -0.367 0.318 4.422 C4 IDP 27 IDP HOB2 2HOB H 0 0 N N N -18.371 14.855 54.441 -2.243 0.687 -7.439 HOB2 IDP 28 IDP HOB3 3HOB H 0 0 N N N -17.698 17.124 55.230 0.627 1.036 -6.591 HOB3 IDP 29 IDP HOA2 2HOA H 0 0 N N N -17.005 17.928 53.045 -1.327 -1.374 -2.819 HOA2 IDP 30 IDP "H5'1" 1H5* H 0 0 N N N -19.775 15.916 52.819 2.245 -0.319 -1.923 "H5'1" IDP 31 IDP "H5'2" 2H5* H 0 0 N N N -18.825 17.212 52.230 0.875 -1.245 -1.264 "H5'2" IDP 32 IDP "H4'" H4* H 0 1 N N N -20.543 15.912 51.350 2.082 1.278 -0.023 "H4'" IDP 33 IDP "H3'" H3* H 0 1 N N N -19.422 13.815 50.360 2.454 -1.687 0.429 "H3'" IDP 34 IDP "HO3'" *HO3 H 0 0 N N N -20.931 13.668 48.664 4.426 -0.855 1.276 "HO3'" IDP 35 IDP "H2'" H2* H 0 1 N N N -17.662 14.990 48.980 1.678 -1.587 2.601 "H2'" IDP 36 IDP "HO2'" *HO2 H 0 0 N N N -18.163 14.709 46.864 3.780 -0.760 3.102 "HO2'" IDP 37 IDP "H1'" H1* H 0 1 N N N -19.444 16.947 47.693 1.194 1.395 2.472 "H1'" IDP 38 IDP H8 H8 H 0 1 N N N -16.276 16.058 49.422 -1.434 -1.284 1.811 H8 IDP 39 IDP HN1 HN1 H 0 1 N N N -16.362 21.669 46.164 -1.417 0.813 7.925 HN1 IDP 40 IDP H2 H2 H 0 1 N N N -18.705 21.347 46.542 0.548 1.875 7.154 H2 IDP 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IDP PB O1B DOUB N N 1 IDP PB O2B SING N N 2 IDP PB O3B SING N N 3 IDP PB O3A SING N N 4 IDP O2B HOB2 SING N N 5 IDP O3B HOB3 SING N N 6 IDP PA O1A DOUB N N 7 IDP PA O2A SING N N 8 IDP PA O3A SING N N 9 IDP PA "O5'" SING N N 10 IDP O2A HOA2 SING N N 11 IDP "O5'" "C5'" SING N N 12 IDP "C5'" "C4'" SING N N 13 IDP "C5'" "H5'1" SING N N 14 IDP "C5'" "H5'2" SING N N 15 IDP "C4'" "O4'" SING N N 16 IDP "C4'" "C3'" SING N N 17 IDP "C4'" "H4'" SING N N 18 IDP "O4'" "C1'" SING N N 19 IDP "C3'" "O3'" SING N N 20 IDP "C3'" "C2'" SING N N 21 IDP "C3'" "H3'" SING N N 22 IDP "O3'" "HO3'" SING N N 23 IDP "C2'" "O2'" SING N N 24 IDP "C2'" "C1'" SING N N 25 IDP "C2'" "H2'" SING N N 26 IDP "O2'" "HO2'" SING N N 27 IDP "C1'" N9 SING N N 28 IDP "C1'" "H1'" SING N N 29 IDP N9 C8 SING Y N 30 IDP N9 C4 SING Y N 31 IDP C8 N7 DOUB Y N 32 IDP C8 H8 SING N N 33 IDP N7 C5 SING Y N 34 IDP C5 C6 SING N N 35 IDP C5 C4 DOUB Y N 36 IDP C6 O6 DOUB N N 37 IDP C6 N1 SING N N 38 IDP N1 C2 SING N N 39 IDP N1 HN1 SING N N 40 IDP C2 N3 DOUB N N 41 IDP C2 H2 SING N N 42 IDP N3 C4 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IDP SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=CNC1=O)C(O)C3O" IDP SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P@](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)NC=Nc23" IDP SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)NC=Nc23" IDP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)OP(=O)(O)O)O)O)N=CNC2=O" IDP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)N=CNC2=O" IDP InChI InChI 1.03 "InChI=1S/C10H14N4O11P2/c15-6-4(1-23-27(21,22)25-26(18,19)20)24-10(7(6)16)14-3-13-5-8(14)11-2-12-9(5)17/h2-4,6-7,10,15-16H,1H2,(H,21,22)(H,11,12,17)(H2,18,19,20)/t4-,6-,7-,10-/m1/s1" IDP InChIKey InChI 1.03 JPXZQMKKFWMMGK-KQYNXXCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IDP "SYSTEMATIC NAME" ACDLabs 10.04 ;inosine 5'-(trihydrogen diphosphate) ; IDP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-oxo-1H-purin-9-yl)oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IDP "Create component" 1999-07-08 RCSB IDP "Modify descriptor" 2011-06-04 RCSB #