data_IDY # _chem_comp.id IDY _chem_comp.name "1-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid" _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H12 O10 S" _chem_comp.mon_nstd_parent_comp_id IDR _chem_comp.pdbx_synonyms ;methyl 2-O-sulfo-alpha-L-idopyranosiduronic acid; 1-O-methyl-2-O-sulfo-alpha-L-iduronic acid; 1-O-methyl-2-O-sulfo-L-iduronic acid; 1-O-methyl-2-O-sulfo-iduronic acid ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-11-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 288.229 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IDY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3UD7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 IDY "methyl 2-O-sulfo-alpha-L-idopyranosiduronic acid" PDB ? 2 IDY "1-O-methyl-2-O-sulfo-alpha-L-iduronic acid" PDB ? 3 IDY "1-O-methyl-2-O-sulfo-L-iduronic acid" PDB ? 4 IDY "1-O-methyl-2-O-sulfo-iduronic acid" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IDY S S S 0 1 N N N -27.334 -8.937 60.763 2.793 0.460 0.332 S IDY 1 IDY C1 C1 C 0 1 N N R -27.716 -11.289 62.913 -0.060 -1.189 0.575 C1 IDY 2 IDY O1 O1 O 0 1 N N N -27.608 -11.265 64.332 -0.642 -2.417 0.133 O1 IDY 3 IDY C2 C2 C 0 1 N N R -26.398 -10.852 62.261 0.725 -0.554 -0.576 C2 IDY 4 IDY O2 O2 O 0 1 N N N -26.625 -10.295 60.959 1.352 0.647 -0.120 O2 IDY 5 IDY C3 C3 C 0 1 N N S -25.348 -11.968 62.253 -0.238 -0.226 -1.721 C3 IDY 6 IDY O3 O3 O 0 1 N N N -24.681 -11.857 63.516 -0.816 -1.434 -2.220 O3 IDY 7 IDY C4 C4 C 0 1 N N S -25.875 -13.409 62.122 -1.345 0.693 -1.195 C4 IDY 8 IDY O4 O4 O 0 1 N N N -25.614 -13.497 60.795 -0.773 1.927 -0.756 O4 IDY 9 IDY C5 C5 C 0 1 N N R -27.238 -13.660 62.786 -2.050 0.009 -0.020 C5 IDY 10 IDY O5 O5 O 0 1 N N N -28.169 -12.596 62.543 -1.092 -0.296 0.996 O5 IDY 11 IDY C6 C6 C 0 1 N N N -27.905 -14.865 62.192 -3.101 0.932 0.541 C6 IDY 12 IDY C7 C7 C 0 1 N N N -27.028 -12.083 64.881 -1.305 -3.150 1.166 C7 IDY 13 IDY O6A O61 O 0 1 N N N -27.860 -15.936 62.881 -2.990 1.362 1.664 O6A IDY 14 IDY O6B O62 O 0 1 N N N -28.539 -14.780 61.077 -4.161 1.275 -0.208 O6B IDY 15 IDY OS1 OS1 O 0 1 N N N -27.901 -8.884 59.381 3.188 1.687 0.932 OS1 IDY 16 IDY OS2 OS2 O 0 1 N N N -26.299 -7.905 60.895 2.842 -0.788 1.010 OS2 IDY 17 IDY OS3 OS3 O 0 1 N N N -28.403 -8.700 61.794 3.642 0.301 -0.921 OS3 IDY 18 IDY H1 H1 H 0 1 N N N -28.452 -10.562 62.540 0.614 -1.385 1.409 H1 IDY 19 IDY H2 H2 H 0 1 N N N -25.973 -10.052 62.885 1.486 -1.251 -0.927 H2 IDY 20 IDY H3 H3 H 0 1 N N N -24.722 -11.823 61.360 0.305 0.276 -2.521 H3 IDY 21 IDY HO3 HO3 H 0 1 N Y N -24.010 -12.526 63.580 -1.438 -1.300 -2.948 HO3 IDY 22 IDY H4 H4 H 0 1 N N N -25.452 -14.259 62.677 -2.065 0.888 -1.990 H4 IDY 23 IDY HO4 HO4 H 0 1 N Y N -25.874 -14.354 60.477 -1.418 2.558 -0.409 HO4 IDY 24 IDY H5 H5 H 0 1 N N N -27.016 -13.769 63.858 -2.520 -0.911 -0.365 H5 IDY 25 IDY H7 H7 H 0 1 N N N -27.059 -11.891 65.964 -0.592 -3.397 1.952 H7 IDY 26 IDY H7A H7A H 0 1 N N N -27.485 -13.061 64.669 -2.110 -2.544 1.582 H7A IDY 27 IDY H7B H7B H 0 1 N N N -25.983 -12.084 64.538 -1.720 -4.068 0.750 H7B IDY 28 IDY HO6B HO62 H 0 0 N N N -28.943 -15.616 60.877 -4.809 1.869 0.195 HO6B IDY 29 IDY HOS3 HOS3 H 0 0 N N N -28.181 -7.934 62.310 4.584 0.175 -0.745 HOS3 IDY 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IDY S O2 SING N N 1 IDY S OS1 DOUB N N 2 IDY S OS2 DOUB N N 3 IDY S OS3 SING N N 4 IDY C1 O1 SING N N 5 IDY C1 C2 SING N N 6 IDY C1 O5 SING N N 7 IDY O1 C7 SING N N 8 IDY C2 O2 SING N N 9 IDY C2 C3 SING N N 10 IDY C3 O3 SING N N 11 IDY C3 C4 SING N N 12 IDY C4 O4 SING N N 13 IDY C4 C5 SING N N 14 IDY C5 O5 SING N N 15 IDY C5 C6 SING N N 16 IDY C6 O6A DOUB N N 17 IDY C6 O6B SING N N 18 IDY C1 H1 SING N N 19 IDY C2 H2 SING N N 20 IDY C3 H3 SING N N 21 IDY O3 HO3 SING N N 22 IDY C4 H4 SING N N 23 IDY O4 HO4 SING N N 24 IDY C5 H5 SING N N 25 IDY C7 H7 SING N N 26 IDY C7 H7A SING N N 27 IDY C7 H7B SING N N 28 IDY O6B HO6B SING N N 29 IDY OS3 HOS3 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IDY SMILES ACDLabs 12.01 "O=C(O)C1OC(OC)C(OS(=O)(=O)O)C(O)C1O" IDY InChI InChI 1.03 "InChI=1S/C7H12O10S/c1-15-7-5(17-18(12,13)14)3(9)2(8)4(16-7)6(10)11/h2-5,7-9H,1H3,(H,10,11)(H,12,13,14)/t2-,3-,4+,5+,7+/m0/s1" IDY InChIKey InChI 1.03 OBWAEUUFHKKIQN-QVVHOTIMSA-N IDY SMILES_CANONICAL CACTVS 3.370 "CO[C@@H]1O[C@H]([C@@H](O)[C@H](O)[C@H]1O[S](O)(=O)=O)C(O)=O" IDY SMILES CACTVS 3.370 "CO[CH]1O[CH]([CH](O)[CH](O)[CH]1O[S](O)(=O)=O)C(O)=O" IDY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CO[C@H]1[C@@H]([C@H]([C@@H]([C@@H](O1)C(=O)O)O)O)OS(=O)(=O)O" IDY SMILES "OpenEye OEToolkits" 1.7.2 "COC1C(C(C(C(O1)C(=O)O)O)O)OS(=O)(=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IDY "SYSTEMATIC NAME" ACDLabs 12.01 "methyl 2-O-sulfo-alpha-L-idopyranosiduronic acid" IDY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2R,3S,4S,5R,6R)-6-methoxy-3,4-bis(oxidanyl)-5-sulfooxy-oxane-2-carboxylic acid" # _pdbx_chem_comp_related.comp_id IDY _pdbx_chem_comp_related.related_comp_id IDR _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 IDY C1 IDR C1 "Carbohydrate core" 2 IDY C2 IDR C2 "Carbohydrate core" 3 IDY C3 IDR C3 "Carbohydrate core" 4 IDY C4 IDR C4 "Carbohydrate core" 5 IDY C5 IDR C5 "Carbohydrate core" 6 IDY C6 IDR C6 "Carbohydrate core" 7 IDY O1 IDR O1 "Carbohydrate core" 8 IDY O2 IDR O2 "Carbohydrate core" 9 IDY O3 IDR O3 "Carbohydrate core" 10 IDY O4 IDR O4 "Carbohydrate core" 11 IDY O5 IDR O5 "Carbohydrate core" 12 IDY O6A IDR O6A "Carbohydrate core" 13 IDY O6B IDR O6B "Carbohydrate core" 14 IDY H1 IDR H1 "Carbohydrate core" 15 IDY H2 IDR H2 "Carbohydrate core" 16 IDY H3 IDR H3 "Carbohydrate core" 17 IDY H4 IDR H4 "Carbohydrate core" 18 IDY H5 IDR H5 "Carbohydrate core" 19 IDY HO3 IDR HO3 "Carbohydrate core" 20 IDY HO4 IDR HO4 "Carbohydrate core" 21 IDY HO6B IDR HO6B "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support IDY "CARBOHYDRATE ISOMER" L PDB ? IDY "CARBOHYDRATE RING" pyranose PDB ? IDY "CARBOHYDRATE ANOMER" alpha PDB ? IDY "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IDY "Create component" 2011-11-03 PDBJ IDY "Initial release" 2012-11-23 RCSB IDY "Other modification" 2020-07-03 RCSB IDY "Modify parent residue" 2020-07-17 RCSB IDY "Modify name" 2020-07-17 RCSB IDY "Modify synonyms" 2020-07-17 RCSB IDY "Modify linking type" 2020-07-17 RCSB IDY "Modify atom id" 2020-07-17 RCSB IDY "Modify component atom id" 2020-07-17 RCSB IDY "Modify leaving atom flag" 2020-07-17 RCSB ##