data_IF9 # _chem_comp.id IF9 _chem_comp.name "[[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl] dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H16 F N5 O9 P2 S" _chem_comp.mon_nstd_parent_comp_id GUN _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-28 _chem_comp.pdbx_modified_date 2023-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 475.284 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IF9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PYW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IF9 "C4'" C1 C 0 1 N N R N N N 20.771 32.186 9.016 -0.051 -1.607 -0.222 "C4'" IF9 1 IF9 "C5'" C2 C 0 1 N N N N N N 22.026 31.442 9.379 -1.356 -1.468 0.564 "C5'" IF9 2 IF9 "C1'" C3 C 0 1 N N R N N N 20.099 34.259 8.201 2.035 -0.651 -0.535 "C1'" IF9 3 IF9 C4 C4 C 0 1 Y N N N N N 20.625 36.375 7.039 4.190 0.622 -0.178 C4 IF9 4 IF9 C5 C5 C 0 1 Y N N N N N 22.174 34.807 6.887 2.581 1.022 1.275 C5 IF9 5 IF9 C11 C6 C 0 1 Y N N N N N 21.729 36.799 6.336 4.618 1.562 0.766 C11 IF9 6 IF9 C6 C7 C 0 1 N N N N N N 21.762 38.122 5.858 5.929 2.082 0.658 C6 IF9 7 IF9 C2 C8 C 0 1 N N N N N N 19.513 38.288 6.852 6.236 0.730 -1.245 C2 IF9 8 IF9 N9 N1 N 0 1 Y N N N N N 20.935 35.095 7.384 2.905 0.298 0.164 N9 IF9 9 IF9 N7 N2 N 0 1 Y N N N N N 22.712 35.822 6.260 3.590 1.764 1.627 N7 IF9 10 IF9 "C3'" C9 C 0 1 N N R N N N 20.278 31.980 7.601 0.931 -2.555 0.512 "C3'" IF9 11 IF9 N1 N3 N 0 1 N N N N N N 20.571 38.797 6.150 6.710 1.647 -0.355 N1 IF9 12 IF9 C1 C10 C 0 1 N N N N N N 18.757 33.554 6.126 3.341 -2.062 1.099 C1 IF9 13 IF9 "C2'" C11 C 0 1 N N R N N N 19.310 33.150 7.501 2.303 -2.080 -0.025 "C2'" IF9 14 IF9 F1 F1 F 0 1 N N N N N N 18.214 32.898 8.404 2.731 -2.905 -1.072 F1 IF9 15 IF9 "O3'" O1 O 0 1 N N N N N N 19.619 30.732 7.603 0.687 -3.917 0.155 "O3'" IF9 16 IF9 "O5'" O2 O 0 1 N N N N N N 23.164 31.980 8.680 -2.246 -0.600 -0.140 "O5'" IF9 17 IF9 PA P1 P 0 1 N N S N N N 24.207 30.900 8.125 -3.717 -0.227 0.400 PA IF9 18 IF9 O1A O3 O 0 1 N N N N N N 24.600 30.258 9.433 -3.615 0.325 1.769 O1A IF9 19 IF9 S2A S1 S 0 1 N N N N N N 25.535 32.152 7.400 -4.922 -1.972 0.429 S2A IF9 20 IF9 O3A O4 O 0 1 N N N N N N 23.219 29.964 7.194 -4.384 0.869 -0.573 O3A IF9 21 IF9 PB P2 P 0 1 N N N N N N 22.603 28.433 7.308 -5.799 1.636 -0.589 PB IF9 22 IF9 O1B O5 O 0 1 N N N N N N 22.924 27.925 5.909 -6.875 0.694 -0.208 O1B IF9 23 IF9 O3B O6 O 0 1 N N N N N N 23.443 28.062 8.519 -5.760 2.858 0.458 O3B IF9 24 IF9 O2B O7 O 0 1 N N N N N N 21.205 28.214 7.707 -6.083 2.206 -2.068 O2B IF9 25 IF9 "O4'" O8 O 0 1 N N N N N N 20.980 33.614 9.105 0.658 -0.349 -0.257 "O4'" IF9 26 IF9 O6 O9 O 0 1 N N N N N N 22.684 38.691 5.278 6.343 2.903 1.459 O6 IF9 27 IF9 N2 N4 N 0 1 N N N N N N 18.460 39.122 7.046 7.050 0.310 -2.266 N2 IF9 28 IF9 "N3'" N5 N 0 1 N N N N N N 19.456 37.039 7.326 5.018 0.242 -1.157 "N3'" IF9 29 IF9 "H4'" H1 H 0 1 N N N N N N 19.972 31.889 9.711 -0.249 -1.963 -1.233 "H4'" IF9 30 IF9 "H5'" H2 H 0 1 N N N N N N 22.195 31.529 10.462 -1.818 -2.449 0.677 "H5'" IF9 31 IF9 "H5''" H3 H 0 0 N N N N N N 21.907 30.382 9.110 -1.145 -1.051 1.549 "H5''" IF9 32 IF9 "H1'" H4 H 0 1 N N N N N N 19.388 34.886 8.759 2.218 -0.600 -1.609 "H1'" IF9 33 IF9 H8 H5 H 0 1 N N N N N N 22.657 33.847 6.999 1.630 0.984 1.785 H8 IF9 34 IF9 "H3'" H6 H 0 1 N N N N N N 21.091 32.053 6.863 0.867 -2.420 1.592 "H3'" IF9 35 IF9 HN1 H7 H 0 1 N N N N N N 20.486 39.736 5.815 7.613 1.989 -0.449 HN1 IF9 36 IF9 H2 H8 H 0 1 N N N N N N 19.592 33.746 5.436 4.284 -1.672 0.716 H2 IF9 37 IF9 H3 H9 H 0 1 N N N N N N 18.133 32.740 5.728 2.987 -1.426 1.910 H3 IF9 38 IF9 H1 H10 H 0 1 N N N N N N 18.149 34.465 6.229 3.491 -3.076 1.471 H1 IF9 39 IF9 "HO3'" H11 H 0 0 N N N N N N 20.261 30.035 7.667 -0.196 -4.233 0.391 "HO3'" IF9 40 IF9 HSA2 H12 H 0 0 N N N N N N 26.474 32.100 8.297 -4.926 -2.358 -0.860 HSA2 IF9 41 IF9 HOB3 H13 H 0 0 N N N N N N 23.867 28.840 8.861 -5.077 3.516 0.270 HOB3 IF9 42 IF9 HOB2 H14 H 0 0 N N N N N N 20.738 27.783 7.001 -6.922 2.681 -2.152 HOB2 IF9 43 IF9 HN22 H15 H 0 0 N N N N N N 17.652 38.800 7.539 6.725 -0.338 -2.911 HN22 IF9 44 IF9 HN21 H16 H 0 0 N N N N N N 18.492 40.058 6.696 7.951 0.661 -2.344 HN21 IF9 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IF9 C1 "C2'" SING N N 1 IF9 "C2'" F1 SING N N 2 IF9 "C2'" "C3'" SING N N 3 IF9 "C3'" "O3'" SING N N 4 IF9 "C3'" "C4'" SING N N 5 IF9 "C4'" "C5'" SING N N 6 IF9 "C5'" "O5'" SING N N 7 IF9 "O5'" PA SING N N 8 IF9 PA O1A DOUB N N 9 IF9 PA S2A SING N N 10 IF9 PA O3A SING N N 11 IF9 O3A PB SING N N 12 IF9 PB O1B DOUB N N 13 IF9 PB O3B SING N N 14 IF9 PB O2B SING N N 15 IF9 "C4'" "O4'" SING N N 16 IF9 "O4'" "C1'" SING N N 17 IF9 "C1'" N9 SING N N 18 IF9 N9 C5 SING Y N 19 IF9 C5 N7 DOUB Y N 20 IF9 N7 C11 SING Y N 21 IF9 C11 C6 SING N N 22 IF9 C6 O6 DOUB N N 23 IF9 C6 N1 SING N N 24 IF9 N1 C2 SING N N 25 IF9 C2 N2 SING N N 26 IF9 C2 "N3'" DOUB N N 27 IF9 "N3'" C4 SING N N 28 IF9 "C2'" "C1'" SING N N 29 IF9 N9 C4 SING Y N 30 IF9 C11 C4 DOUB Y N 31 IF9 "C4'" "H4'" SING N N 32 IF9 "C5'" "H5'" SING N N 33 IF9 "C5'" "H5''" SING N N 34 IF9 "C1'" "H1'" SING N N 35 IF9 C5 H8 SING N N 36 IF9 "C3'" "H3'" SING N N 37 IF9 N1 HN1 SING N N 38 IF9 C1 H2 SING N N 39 IF9 C1 H3 SING N N 40 IF9 C1 H1 SING N N 41 IF9 "O3'" "HO3'" SING N N 42 IF9 S2A HSA2 SING N N 43 IF9 O3B HOB3 SING N N 44 IF9 O2B HOB2 SING N N 45 IF9 N2 HN22 SING N N 46 IF9 N2 HN21 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IF9 InChI InChI 1.06 "InChI=1S/C11H16FN5O9P2S/c1-11(12)6(18)4(2-24-28(23,29)26-27(20,21)22)25-9(11)17-3-14-5-7(17)15-10(13)16-8(5)19/h3-4,6,9,18H,2H2,1H3,(H,23,29)(H2,20,21,22)(H3,13,15,16,19)/t4-,6-,9-,11-,28+/m1/s1" IF9 InChIKey InChI 1.06 QCBAKKHBHHSVKS-VXAAHYPFSA-N IF9 SMILES_CANONICAL CACTVS 3.385 "C[C@@]1(F)[C@H](O)[C@@H](CO[P@@](S)(=O)O[P](O)(O)=O)O[C@H]1n2cnc3C(=O)NC(=Nc23)N" IF9 SMILES CACTVS 3.385 "C[C]1(F)[CH](O)[CH](CO[P](S)(=O)O[P](O)(O)=O)O[CH]1n2cnc3C(=O)NC(=Nc23)N" IF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]1([C@@H]([C@H](O[C@H]1n2cnc3c2N=C(NC3=O)N)CO[P@@](=O)(OP(=O)(O)O)S)O)F" IF9 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(C(OC1n2cnc3c2N=C(NC3=O)N)COP(=O)(OP(=O)(O)O)S)O)F" # _pdbx_chem_comp_identifier.comp_id IF9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IF9 "Create component" 2023-07-28 PDBE IF9 "Initial release" 2023-12-27 RCSB #