data_IFM # _chem_comp.id IFM _chem_comp.name 5-HYDROXYMETHYL-3,4-DIHYDROXYPIPERIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Afegostat; isofagomine; (3R,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-3,4-DIOL" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-02-09 _chem_comp.pdbx_modified_date 2020-05-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 147.172 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IFM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1OCN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IFM O4 O4 O 0 1 N N N 8.554 -8.418 10.574 2.137 -0.296 -0.352 O4 IFM 1 IFM C4 C4 C 0 1 N N R 9.733 -7.636 10.353 0.806 0.223 -0.369 C4 IFM 2 IFM C3 C3 C 0 1 N N R 10.808 -8.362 11.122 0.076 -0.278 -1.619 C3 IFM 3 IFM O3 O3 O 0 1 N N N 10.766 -7.827 12.431 0.710 0.245 -2.787 O3 IFM 4 IFM C2 C2 C 0 1 N N N 12.159 -8.175 10.497 -1.379 0.189 -1.574 C2 IFM 5 IFM N N N 0 1 N N N 12.142 -8.821 9.159 -2.045 -0.371 -0.394 N IFM 6 IFM C1 C1 C 0 1 N N N 10.996 -8.487 8.317 -1.404 0.214 0.788 C1 IFM 7 IFM C5 C5 C 0 1 N N R 9.960 -7.503 8.843 0.049 -0.252 0.873 C5 IFM 8 IFM C6 C6 C 0 1 N N N 10.306 -6.087 8.366 0.702 0.335 2.126 C6 IFM 9 IFM O6 O6 O 0 1 N N N 11.336 -5.557 9.132 -0.006 -0.108 3.285 O6 IFM 10 IFM H4 H4 H 0 1 N N N 8.783 -9.380 10.531 2.573 0.022 -1.155 H4 IFM 11 IFM HA HA H 0 1 N N N 9.691 -6.596 10.708 0.840 1.313 -0.379 HA IFM 12 IFM H3 H3 H 0 1 N N N 10.634 -9.448 11.123 0.107 -1.367 -1.645 H3 IFM 13 IFM HB HB H 0 1 N N N 9.823 -7.713 12.711 0.218 -0.092 -3.548 HB IFM 14 IFM H2C1 1H2C H 0 0 N N N 12.375 -7.102 10.390 -1.895 -0.143 -2.474 H2C1 IFM 15 IFM H2C2 2H2C H 0 0 N N N 12.937 -8.628 11.129 -1.408 1.278 -1.523 H2C2 IFM 16 IFM H H H 0 1 N N N 12.997 -8.539 8.659 -2.995 -0.031 -0.408 H IFM 17 IFM H1C1 1H1C H 0 0 N N N 10.468 -9.428 8.102 -1.940 -0.101 1.683 H1C1 IFM 18 IFM H1C2 2H1C H 0 0 N N N 11.442 -7.968 7.456 -1.432 1.301 0.714 H1C2 IFM 19 IFM H5 H5 H 0 1 N N N 8.976 -7.750 8.417 0.080 -1.341 0.923 H5 IFM 20 IFM H6C1 1H6C H 0 0 N N N 10.621 -6.126 7.313 0.671 1.423 2.075 H6C1 IFM 21 IFM H6C2 2H6C H 0 0 N N N 9.417 -5.448 8.471 1.739 0.003 2.185 H6C2 IFM 22 IFM H6 H6 H 0 1 N N N 11.867 -6.293 9.527 0.436 0.284 4.050 H6 IFM 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IFM O4 C4 SING N N 1 IFM O4 H4 SING N N 2 IFM C4 C3 SING N N 3 IFM C4 C5 SING N N 4 IFM C4 HA SING N N 5 IFM C3 O3 SING N N 6 IFM C3 C2 SING N N 7 IFM C3 H3 SING N N 8 IFM O3 HB SING N N 9 IFM C2 N SING N N 10 IFM C2 H2C1 SING N N 11 IFM C2 H2C2 SING N N 12 IFM N C1 SING N N 13 IFM N H SING N N 14 IFM C1 C5 SING N N 15 IFM C1 H1C1 SING N N 16 IFM C1 H1C2 SING N N 17 IFM C5 C6 SING N N 18 IFM C5 H5 SING N N 19 IFM C6 O6 SING N N 20 IFM C6 H6C1 SING N N 21 IFM C6 H6C2 SING N N 22 IFM O6 H6 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IFM SMILES ACDLabs 10.04 "OC1C(CO)CNCC1O" IFM SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1CNC[C@@H](O)[C@@H]1O" IFM SMILES CACTVS 3.341 "OC[CH]1CNC[CH](O)[CH]1O" IFM SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H]([C@@H](CN1)O)O)CO" IFM SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(CN1)O)O)CO" IFM InChI InChI 1.03 "InChI=1S/C6H13NO3/c8-3-4-1-7-2-5(9)6(4)10/h4-10H,1-3H2/t4-,5-,6-/m1/s1" IFM InChIKey InChI 1.03 QPYJXFZUIJOGNX-HSUXUTPPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IFM "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,4R,5R)-5-(hydroxymethyl)piperidine-3,4-diol" IFM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3R,4R,5R)-5-(hydroxymethyl)piperidine-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IFM "Create component" 2003-02-09 RCSB IFM "Modify descriptor" 2011-06-04 RCSB IFM "Modify synonyms" 2015-06-29 PDBJ IFM "Modify synonyms" 2020-05-27 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 IFM Afegostat ? ? 2 IFM isofagomine ? ? 3 IFM "(3R,4R,5R)-5-(HYDROXYMETHYL)PIPERIDINE-3,4-DIOL" ? ? #