data_IG8 # _chem_comp.id IG8 _chem_comp.name "(3~{R})-3-oxidanyldecanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-01 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.264 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IG8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q1L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IG8 CA C1 C 0 1 N N N N N N 0.202 4.474 3.991 3.067 0.840 -0.166 CA IG8 1 IG8 C C2 C 0 1 N N N Y N Y 1.186 3.350 3.658 4.340 0.125 0.206 C IG8 2 IG8 O O1 O 0 1 N N N Y N Y 1.018 2.221 4.076 4.299 -1.016 0.601 O IG8 3 IG8 CB C3 C 0 1 N N R N N N -1.199 3.887 4.196 1.876 -0.097 0.047 CB IG8 4 IG8 CG2 C4 C 0 1 N N N N N N -1.584 3.973 5.675 0.575 0.666 -0.211 CG2 IG8 5 IG8 OG1 O2 O 0 1 N N N N N N -2.135 4.620 3.419 1.969 -1.199 -0.858 OG1 IG8 6 IG8 CD C5 C 0 1 N N N N N N -0.630 3.111 6.506 -0.618 -0.233 0.122 CD IG8 7 IG8 CE C6 C 0 1 N N N N N N -1.386 2.506 7.690 -1.919 0.530 -0.136 CE IG8 8 IG8 CZ C7 C 0 1 N N N N N N -0.467 1.542 8.444 -3.112 -0.369 0.197 CZ IG8 9 IG8 CH C8 C 0 1 N N N N N N -1.292 0.378 8.997 -4.413 0.394 -0.061 CH IG8 10 IG8 CI C9 C 0 1 N N N N N N -1.175 -1.766 10.275 -6.906 0.258 0.014 CI IG8 11 IG8 CT C10 C 0 1 N N N N N N -0.402 -0.510 9.870 -5.605 -0.505 0.272 CT IG8 12 IG8 O1 O3 O 0 1 N Y N Y N Y 2.211 3.652 2.906 5.520 0.756 0.099 O1 IG8 13 IG8 HA1 H1 H 0 1 N N N N N N 0.524 4.982 4.912 2.950 1.724 0.461 HA1 IG8 14 IG8 HA2 H2 H 0 1 N N N N N N 0.178 5.197 3.162 3.111 1.139 -1.213 HA2 IG8 15 IG8 HB H3 H 0 1 N N N N N N -1.190 2.830 3.891 1.883 -0.467 1.072 HB IG8 16 IG8 HG21 H4 H 0 0 N N N N N N -1.518 5.019 6.010 0.545 1.556 0.417 HG21 IG8 17 IG8 HG22 H5 H 0 0 N N N N N N -2.614 3.610 5.807 0.527 0.959 -1.260 HG22 IG8 18 IG8 HG1 H6 H 0 1 N N N N N N -3.004 4.258 3.545 1.968 -0.944 -1.791 HG1 IG8 19 IG8 HD1 H7 H 0 1 N N N N N N -0.225 2.303 5.878 -0.588 -1.123 -0.506 HD1 IG8 20 IG8 HD2 H8 H 0 1 N N N N N N 0.196 3.734 6.879 -0.571 -0.526 1.171 HD2 IG8 21 IG8 HE1 H9 H 0 1 N N N N N N -1.709 3.310 8.368 -1.949 1.420 0.492 HE1 IG8 22 IG8 HE2 H10 H 0 1 N N N N N N -2.267 1.960 7.322 -1.967 0.823 -1.184 HE2 IG8 23 IG8 HZ1 H11 H 0 1 N N N N N N 0.300 1.154 7.758 -3.082 -1.259 -0.431 HZ1 IG8 24 IG8 HZ2 H12 H 0 1 N N N N N N 0.020 2.074 9.275 -3.064 -0.662 1.246 HZ2 IG8 25 IG8 HH1 H13 H 0 1 N N N N N N -2.122 0.772 9.602 -4.442 1.284 0.567 HH1 IG8 26 IG8 HH2 H14 H 0 1 N N N N N N -1.695 -0.215 8.162 -4.460 0.687 -1.109 HH2 IG8 27 IG8 HI2 H15 H 0 1 N N N N N N -0.536 -2.404 10.902 -6.936 1.148 0.642 HI2 IG8 28 IG8 HI3 H16 H 0 1 N N N N N N -2.073 -1.477 10.841 -6.954 0.551 -1.034 HI3 IG8 29 IG8 HI1 H17 H 0 1 N N N N N N -1.473 -2.320 9.373 -7.756 -0.382 0.252 HI1 IG8 30 IG8 HT1 H18 H 0 1 N N N N N N 0.496 -0.799 9.304 -5.576 -1.395 -0.356 HT1 IG8 31 IG8 HT2 H19 H 0 1 N N N N N N -0.104 0.044 10.772 -5.558 -0.798 1.321 HT2 IG8 32 IG8 H1 H20 H 0 1 N Y N Y N Y 2.744 2.877 2.770 6.309 0.257 0.349 H1 IG8 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IG8 OG1 CB SING N N 1 IG8 C CA SING N N 2 IG8 C O DOUB N N 3 IG8 CA CB SING N N 4 IG8 CB CG2 SING N N 5 IG8 CG2 CD SING N N 6 IG8 CD CE SING N N 7 IG8 CE CZ SING N N 8 IG8 CZ CH SING N N 9 IG8 CH CT SING N N 10 IG8 CT CI SING N N 11 IG8 C O1 SING N N 12 IG8 CA HA1 SING N N 13 IG8 CA HA2 SING N N 14 IG8 CB HB SING N N 15 IG8 CG2 HG21 SING N N 16 IG8 CG2 HG22 SING N N 17 IG8 OG1 HG1 SING N N 18 IG8 CD HD1 SING N N 19 IG8 CD HD2 SING N N 20 IG8 CE HE1 SING N N 21 IG8 CE HE2 SING N N 22 IG8 CZ HZ1 SING N N 23 IG8 CZ HZ2 SING N N 24 IG8 CH HH1 SING N N 25 IG8 CH HH2 SING N N 26 IG8 CI HI2 SING N N 27 IG8 CI HI3 SING N N 28 IG8 CI HI1 SING N N 29 IG8 CT HT1 SING N N 30 IG8 CT HT2 SING N N 31 IG8 O1 H1 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IG8 InChI InChI 1.06 "InChI=1S/C10H20O3/c1-2-3-4-5-6-7-9(11)8-10(12)13/h9,11H,2-8H2,1H3,(H,12,13)/t9-/m1/s1" IG8 InChIKey InChI 1.06 FYSSBMZUBSBFJL-SECBINFHSA-N IG8 SMILES_CANONICAL CACTVS 3.385 "CCCCCCC[C@@H](O)CC(O)=O" IG8 SMILES CACTVS 3.385 "CCCCCCC[CH](O)CC(O)=O" IG8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCC[C@H](CC(=O)O)O" IG8 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCC(CC(=O)O)O" # _pdbx_chem_comp_identifier.comp_id IG8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R})-3-oxidanyldecanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IG8 "Create component" 2023-08-01 PDBE IG8 "Modify backbone" 2023-11-03 PDBE IG8 "Initial release" 2024-08-14 RCSB #