data_IGU # _chem_comp.id IGU _chem_comp.name "2'-DEOXYISOGUANINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2016-11-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces 0UH _chem_comp.formula_weight 347.221 _chem_comp.one_letter_code G _chem_comp.three_letter_code IGU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1BHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IGU P P P 0 1 N N N 9.313 -3.551 -29.892 -4.812 -1.132 0.199 P IGU 1 IGU OP1 O1P O 0 1 N N N 9.007 -4.709 -29.021 -5.947 -0.210 -0.025 OP1 IGU 2 IGU OP2 O2P O 0 1 N N N 10.655 -3.415 -30.500 -5.150 -2.111 1.432 OP2 IGU 3 IGU OP3 O3P O 0 1 N Y N ? ? ? -4.562 -2.009 -1.128 OP3 IGU 4 IGU "O5'" "O5'" O 0 1 N N N 8.964 -2.208 -29.087 -3.487 -0.282 0.537 "O5'" IGU 5 IGU "C5'" "C5'" C 0 1 N N N 8.939 -0.975 -29.811 -2.987 0.751 -0.315 "C5'" IGU 6 IGU "C4'" "C4'" C 0 1 N N R 8.119 0.104 -29.101 -1.722 1.352 0.301 "C4'" IGU 7 IGU "O4'" "O4'" O 0 1 N N N 6.743 -0.322 -28.932 -0.654 0.380 0.319 "O4'" IGU 8 IGU "C3'" "C3'" C 0 1 N N S 8.706 0.408 -27.716 -1.163 2.485 -0.596 "C3'" IGU 9 IGU "O3'" "O3'" O 0 1 N N N 8.887 1.810 -27.448 -1.786 3.734 -0.289 "O3'" IGU 10 IGU "C2'" "C2'" C 0 1 N N N 7.695 -0.317 -26.848 0.334 2.503 -0.202 "C2'" IGU 11 IGU "C1'" "C1'" C 0 1 N N R 6.355 -0.133 -27.563 0.579 1.112 0.414 "C1'" IGU 12 IGU N9 N9 N 0 1 N N N 5.332 -1.123 -27.144 1.631 0.415 -0.331 N9 IGU 13 IGU C8 C8 C 0 1 N N N 5.507 -2.414 -26.707 1.568 0.020 -1.638 C8 IGU 14 IGU N7 N7 N 0 1 N N N 4.408 -3.069 -26.479 2.675 -0.570 -1.978 N7 IGU 15 IGU C6 C6 C 0 1 N N N 2.021 -2.176 -26.653 4.810 -1.083 -0.702 C6 IGU 16 IGU N6 N6 N 0 1 N N N 1.325 -3.252 -26.286 5.496 -1.706 -1.708 N6 IGU 17 IGU C5 C5 C 0 1 N N N 3.420 -2.129 -26.731 3.519 -0.592 -0.914 C5 IGU 18 IGU N1 N1 N 0 1 N N N 1.324 -1.021 -26.983 5.370 -0.927 0.533 N1 IGU 19 IGU C2 C2 C 0 1 N N N 1.917 0.176 -27.374 4.689 -0.314 1.517 C2 IGU 20 IGU O2 O2 O 0 1 N N N 1.224 1.153 -27.640 5.215 -0.188 2.612 O2 IGU 21 IGU N3 N3 N 0 1 N N N 3.276 0.198 -27.440 3.468 0.170 1.329 N3 IGU 22 IGU C4 C4 C 0 1 N N N 3.964 -0.934 -27.125 2.857 0.047 0.154 C4 IGU 23 IGU HOP2 HOP2 H 0 0 N N N 11.199 -4.147 -30.235 -5.938 -2.655 1.297 HOP2 IGU 24 IGU HOP3 HOP3 H 0 0 N Y N ? ? ? -3.831 -2.637 -1.053 HOP3 IGU 25 IGU "H5'" "H5'1" H 0 1 N N N 9.971 -0.614 -29.928 -2.751 0.332 -1.293 "H5'" IGU 26 IGU "H5''" "H5'2" H 0 0 N N N 8.499 -1.157 -30.803 -3.742 1.529 -0.425 "H5''" IGU 27 IGU "H4'" "H4'" H 0 1 N N N 8.151 1.023 -29.704 -1.923 1.719 1.307 "H4'" IGU 28 IGU "H3'" "H3'" H 0 1 N N N 9.673 -0.110 -27.631 -1.285 2.241 -1.652 "H3'" IGU 29 IGU "HO3'" "HO3'" H 0 0 N Y N 9.252 1.922 -26.578 -1.470 4.474 -0.824 "HO3'" IGU 30 IGU "H2'" "H2'1" H 0 1 N N N 7.948 -1.385 -26.770 0.959 2.645 -1.084 "H2'" IGU 31 IGU "H2''" "H2'2" H 0 0 N N N 7.661 0.127 -25.842 0.526 3.285 0.533 "H2''" IGU 32 IGU "H1'" "H1'" H 0 1 N N N 5.985 0.890 -27.397 0.869 1.216 1.460 "H1'" IGU 33 IGU H8 H8 H 0 1 N N N 6.484 -2.851 -26.564 0.723 0.175 -2.292 H8 IGU 34 IGU HN61 HN61 H 0 0 N N N 0.348 -3.041 -26.308 5.086 -1.811 -2.582 HN61 IGU 35 IGU HN62 HN62 H 0 0 N N N 1.517 -4.004 -26.916 6.391 -2.043 -1.549 HN62 IGU 36 IGU HN1 HN1 H 0 1 N N N 0.326 -1.051 -26.936 6.265 -1.260 0.701 HN1 IGU 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IGU P OP1 DOUB N N 1 IGU P OP2 SING N N 2 IGU P OP3 SING N N 3 IGU P "O5'" SING N N 4 IGU OP2 HOP2 SING N N 5 IGU OP3 HOP3 SING N N 6 IGU "O5'" "C5'" SING N N 7 IGU "C5'" "C4'" SING N N 8 IGU "C5'" "H5'" SING N N 9 IGU "C5'" "H5''" SING N N 10 IGU "C4'" "O4'" SING N N 11 IGU "C4'" "C3'" SING N N 12 IGU "C4'" "H4'" SING N N 13 IGU "O4'" "C1'" SING N N 14 IGU "C3'" "O3'" SING N N 15 IGU "C3'" "C2'" SING N N 16 IGU "C3'" "H3'" SING N N 17 IGU "O3'" "HO3'" SING N N 18 IGU "C2'" "C1'" SING N N 19 IGU "C2'" "H2'" SING N N 20 IGU "C2'" "H2''" SING N N 21 IGU "C1'" N9 SING N N 22 IGU "C1'" "H1'" SING N N 23 IGU N9 C8 SING N N 24 IGU N9 C4 SING N N 25 IGU C8 N7 DOUB N N 26 IGU C8 H8 SING N N 27 IGU N7 C5 SING N N 28 IGU C6 N6 SING N N 29 IGU C6 C5 DOUB N N 30 IGU C6 N1 SING N N 31 IGU N6 HN61 SING N N 32 IGU N6 HN62 SING N N 33 IGU C5 C4 SING N N 34 IGU N1 C2 SING N N 35 IGU C2 O2 DOUB N N 36 IGU C2 N3 SING N N 37 IGU N3 C4 DOUB N N 38 IGU N1 HN1 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IGU SMILES ACDLabs 12.01 "P(=O)(O)(O)OCC1OC(CC1O)N2C=NC3=C(N)NC(=O)N=C23" IGU InChI InChI 1.03 "InChI=1S/C10H14N5O7P/c11-8-7-9(14-10(17)13-8)15(3-12-7)6-1-4(16)5(22-6)2-21-23(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1" IGU InChIKey InChI 1.03 GEQDRKVFKBSPSW-KVQBGUIXSA-N IGU SMILES_CANONICAL CACTVS 3.385 "NC1=C2N=CN([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)C2=NC(=O)N1" IGU SMILES CACTVS 3.385 "NC1=C2N=CN([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)C2=NC(=O)N1" IGU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]([C@H](O[C@H]1N2C=NC3=C(NC(=O)N=C32)N)COP(=O)(O)O)O" IGU SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(OC1N2C=NC3=C(NC(=O)N=C32)N)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IGU "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-2-oxo-2-hydroadenosine 5'-(dihydrogen phosphate) ; IGU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IGU "Create component" 1999-07-08 RCSB IGU "Modify descriptor" 2011-06-04 RCSB IGU "Other modification" 2016-11-16 RCSB #