data_II0
#
_chem_comp.id II0
_chem_comp.name "(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H52 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Alloxanthin
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-07-01
_chem_comp.pdbx_modified_date 2023-04-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 564.840
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code II0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7Y7B
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
II0 C03 C1 C 0 1 N N N 218.398 153.447 145.204 -12.581 -0.837 -0.033 C03 II0 1
II0 C04 C2 C 0 1 N N N 198.011 163.991 141.096 12.581 0.837 -0.033 C04 II0 2
II0 C05 C3 C 0 1 N N N 219.443 152.647 145.952 -13.865 -0.121 -0.457 C05 II0 3
II0 C06 C4 C 0 1 N N N 196.869 163.843 142.091 13.865 0.121 -0.458 C06 II0 4
II0 C07 C5 C 0 1 N N R 219.462 153.145 147.383 -14.006 1.160 0.375 C07 II0 5
II0 C08 C6 C 0 1 N N R 196.195 165.173 142.441 14.006 -1.160 0.373 C08 II0 6
II0 C09 C7 C 0 1 N N N 217.068 153.164 145.813 -11.429 0.125 -0.032 C09 II0 7
II0 C10 C8 C 0 1 N N N 198.960 165.023 141.635 11.429 -0.125 -0.033 C10 II0 8
II0 C11 C9 C 0 1 N N N 218.098 152.968 148.034 -12.901 2.134 -0.041 C11 II0 9
II0 C12 C10 C 0 1 N N N 196.967 166.381 141.913 12.901 -2.134 -0.042 C12 II0 10
II0 C13 C11 C 0 1 N N N 217.038 152.620 147.021 -11.570 1.440 -0.033 C13 II0 11
II0 C14 C12 C 0 1 N N N 198.446 166.155 142.090 11.570 -1.440 -0.033 C14 II0 12
II0 C15 C13 C 0 1 N N N 218.350 153.052 143.741 -12.292 -1.976 -1.013 C15 II0 13
II0 C16 C14 C 0 1 N N N 218.678 154.925 145.385 -12.762 -1.412 1.374 C16 II0 14
II0 C17 C15 C 0 1 N N N 198.745 162.671 140.921 12.762 1.411 1.373 C17 II0 15
II0 C18 C16 C 0 1 N N N 197.473 164.470 139.756 12.290 1.978 -1.010 C18 II0 16
II0 C19 C17 C 0 1 N N N 215.965 151.647 147.389 -10.325 2.289 -0.024 C19 II0 17
II0 C20 C18 C 0 1 N N N 199.306 167.175 142.772 10.325 -2.289 -0.023 C20 II0 18
II0 C21 C19 C 0 1 N N N 216.011 153.434 145.191 -10.101 -0.412 -0.033 C21 II0 19
II0 C22 C20 C 0 1 N N N 200.194 164.806 141.676 10.101 0.412 -0.033 C22 II0 20
II0 C23 C21 C 0 1 N N N 214.992 153.656 144.629 -9.013 -0.852 -0.033 C23 II0 21
II0 C24 C22 C 0 1 N N N 201.347 164.566 141.754 9.012 0.851 -0.033 C24 II0 22
II0 C25 C23 C 0 1 N N N 213.873 153.852 144.085 -7.685 -1.388 -0.033 C25 II0 23
II0 C26 C24 C 0 1 N N N 202.557 164.261 141.893 7.685 1.388 -0.033 C26 II0 24
II0 C27 C25 C 0 1 N N N 213.188 152.741 143.353 -7.475 -2.881 -0.033 C27 II0 25
II0 C28 C26 C 0 1 N N N 203.643 165.205 141.479 7.475 2.880 -0.033 C28 II0 26
II0 C29 C27 C 0 1 N N N 213.270 155.044 144.166 -6.609 -0.548 -0.033 C29 II0 27
II0 C30 C28 C 0 1 N N N 202.842 163.065 142.426 6.609 0.548 -0.033 C30 II0 28
II0 C31 C29 C 0 1 N N N 211.956 155.277 143.566 -5.310 -1.073 -0.033 C31 II0 29
II0 C32 C30 C 0 1 N N N 204.197 162.581 142.668 5.310 1.073 -0.033 C32 II0 30
II0 C33 C31 C 0 1 N N N 211.379 156.457 143.768 -4.224 -0.225 -0.033 C33 II0 31
II0 C34 C32 C 0 1 N N N 204.735 161.577 141.982 4.224 0.225 -0.033 C34 II0 32
II0 C35 C33 C 0 1 N N N 210.046 156.804 143.249 -2.927 -0.749 -0.033 C35 II0 33
II0 C36 C34 C 0 1 N N N 206.101 161.179 142.364 2.927 0.749 -0.033 C36 II0 34
II0 C37 C35 C 0 1 N N N 209.029 155.731 143.041 -2.717 -2.242 -0.033 C37 II0 35
II0 C38 C36 C 0 1 N N N 206.905 162.121 143.201 2.717 2.241 -0.033 C38 II0 36
II0 C39 C37 C 0 1 N N N 209.719 158.076 142.994 -1.840 0.100 -0.033 C39 II0 37
II0 C40 C38 C 0 1 N N N 206.622 159.997 142.007 1.840 -0.100 -0.033 C40 II0 38
II0 C41 C39 C 0 1 N N N 208.376 158.396 142.516 -0.543 -0.425 -0.033 C41 II0 39
II0 C42 C40 C 0 1 N N N 207.973 159.664 142.451 0.543 0.424 -0.033 C42 II0 40
II0 O01 O1 O 0 1 N N N 220.419 152.392 148.120 -15.284 1.752 0.132 O01 II0 41
II0 O02 O2 O 0 1 N N N 194.874 165.188 141.892 15.285 -1.750 0.134 O02 II0 42
II0 H1 H1 H 0 1 N N N 219.184 151.578 145.930 -13.809 0.134 -1.515 H1 II0 43
II0 H2 H2 H 0 1 N N N 220.430 152.795 145.490 -14.722 -0.769 -0.278 H2 II0 44
II0 H3 H3 H 0 1 N N N 196.113 163.172 141.658 13.809 -0.134 -1.516 H3 II0 45
II0 H4 H4 H 0 1 N N N 197.267 163.399 143.016 14.722 0.769 -0.279 H4 II0 46
II0 H5 H5 H 0 1 N N N 219.727 154.213 147.389 -13.905 0.922 1.434 H5 II0 47
II0 H6 H6 H 0 1 N N N 196.139 165.252 143.537 13.905 -0.923 1.432 H6 II0 48
II0 H8 H8 H 0 1 N N N 217.818 153.906 148.535 -13.108 2.507 -1.044 H8 II0 49
II0 H9 H9 H 0 1 N N N 218.160 152.159 148.777 -12.875 2.970 0.658 H9 II0 50
II0 H10 H10 H 0 1 N N N 196.665 167.280 142.470 13.107 -2.508 -1.045 H10 II0 51
II0 H11 H11 H 0 1 N N N 196.743 166.519 140.845 12.877 -2.971 0.655 H11 II0 52
II0 H13 H13 H 0 1 N N N 218.145 151.974 143.658 -13.125 -2.678 -1.011 H13 II0 53
II0 H14 H14 H 0 1 N N N 217.553 153.617 143.235 -12.162 -1.568 -2.015 H14 II0 54
II0 H15 H15 H 0 1 N N N 219.317 153.278 143.268 -11.381 -2.493 -0.710 H15 II0 55
II0 H16 H16 H 0 1 N N N 218.704 155.165 146.458 -12.964 -0.602 2.074 H16 II0 56
II0 H17 H17 H 0 1 N N N 219.649 155.172 144.931 -13.599 -2.111 1.376 H17 II0 57
II0 H18 H18 H 0 1 N N N 217.885 155.511 144.897 -11.853 -1.933 1.673 H18 II0 58
II0 H19 H19 H 0 1 N N N 199.130 162.333 141.894 12.964 0.601 2.073 H19 II0 59
II0 H20 H20 H 0 1 N N N 198.052 161.917 140.519 13.599 2.110 1.375 H20 II0 60
II0 H21 H21 H 0 1 N N N 199.584 162.808 140.223 11.853 1.933 1.673 H21 II0 61
II0 H22 H22 H 0 1 N N N 196.944 165.425 139.893 11.382 2.497 -0.703 H22 II0 62
II0 H23 H23 H 0 1 N N N 198.309 164.611 139.055 13.126 2.677 -1.012 H23 II0 63
II0 H24 H24 H 0 1 N N N 196.777 163.720 139.351 12.154 1.572 -2.013 H24 II0 64
II0 H25 H25 H 0 1 N N N 216.113 151.312 148.426 -10.018 2.494 -1.049 H25 II0 65
II0 H26 H26 H 0 1 N N N 214.982 152.133 147.298 -10.531 3.228 0.489 H26 II0 66
II0 H27 H27 H 0 1 N N N 216.009 150.780 146.714 -9.527 1.758 0.495 H27 II0 67
II0 H28 H28 H 0 1 N N N 198.689 168.035 143.071 10.018 -2.495 -1.049 H28 II0 68
II0 H29 H29 H 0 1 N N N 199.768 166.727 143.664 10.531 -3.228 0.490 H29 II0 69
II0 H30 H30 H 0 1 N N N 200.093 167.511 142.081 9.528 -1.758 0.496 H30 II0 70
II0 H31 H31 H 0 1 N N N 213.817 151.839 143.383 -7.425 -3.241 0.994 H31 II0 71
II0 H32 H32 H 0 1 N N N 212.220 152.529 143.831 -8.306 -3.364 -0.547 H32 II0 72
II0 H33 H33 H 0 1 N N N 213.023 153.038 142.307 -6.543 -3.116 -0.547 H33 II0 73
II0 H34 H34 H 0 1 N N N 204.623 164.750 141.684 7.425 3.240 -1.060 H34 II0 74
II0 H35 H35 H 0 1 N N N 203.555 165.416 140.403 6.543 3.116 0.481 H35 II0 75
II0 H36 H36 H 0 1 N N N 203.549 166.143 142.046 8.306 3.364 0.481 H36 II0 76
II0 H37 H37 H 0 1 N N N 213.764 155.852 144.686 -6.759 0.522 -0.033 H37 II0 77
II0 H38 H38 H 0 1 N N N 202.018 162.420 142.693 6.759 -0.522 -0.033 H38 II0 78
II0 H39 H39 H 0 1 N N N 211.470 154.513 142.977 -5.159 -2.142 -0.033 H39 II0 79
II0 H40 H40 H 0 1 N N N 204.788 163.058 143.436 5.159 2.142 -0.033 H40 II0 80
II0 H41 H41 H 0 1 N N N 211.915 157.199 144.342 -4.374 0.845 -0.033 H41 II0 81
II0 H42 H42 H 0 1 N N N 204.199 161.080 141.187 4.374 -0.845 -0.033 H42 II0 82
II0 H43 H43 H 0 1 N N N 209.467 154.755 143.298 -2.667 -2.601 -1.061 H43 II0 83
II0 H44 H44 H 0 1 N N N 208.157 155.922 143.684 -1.785 -2.478 0.481 H44 II0 84
II0 H45 H45 H 0 1 N N N 208.713 155.725 141.987 -3.548 -2.725 0.481 H45 II0 85
II0 H46 H46 H 0 1 N N N 207.894 161.683 143.400 2.666 2.601 -1.060 H46 II0 86
II0 H47 H47 H 0 1 N N N 207.027 163.074 142.666 1.785 2.477 0.481 H47 II0 87
II0 H48 H48 H 0 1 N N N 206.385 162.300 144.154 3.548 2.725 0.481 H48 II0 88
II0 H49 H49 H 0 1 N N N 210.444 158.863 143.141 -1.990 1.169 -0.033 H49 II0 89
II0 H50 H50 H 0 1 N N N 206.054 159.305 141.403 1.990 -1.169 -0.033 H50 II0 90
II0 H51 H51 H 0 1 N N N 207.708 157.602 142.215 -0.393 -1.494 -0.033 H51 II0 91
II0 H52 H52 H 0 1 N N N 208.653 160.455 142.730 0.393 1.494 -0.033 H52 II0 92
II0 H53 H53 H 0 1 N N N 220.438 152.697 149.019 -15.440 2.568 0.627 H53 II0 93
II0 H54 H54 H 0 1 N N N 194.387 164.439 142.216 15.442 -2.565 0.629 H54 II0 94
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
II0 C18 C04 SING N N 1
II0 C17 C04 SING N N 2
II0 C04 C10 SING N N 3
II0 C04 C06 SING N N 4
II0 C28 C26 SING N N 5
II0 C10 C22 SING N N 6
II0 C10 C14 DOUB N N 7
II0 C22 C24 TRIP N N 8
II0 C24 C26 SING N N 9
II0 O02 C08 SING N N 10
II0 C26 C30 DOUB N E 11
II0 C12 C14 SING N N 12
II0 C12 C08 SING N N 13
II0 C34 C36 SING N N 14
II0 C34 C32 DOUB N E 15
II0 C40 C36 DOUB N E 16
II0 C40 C42 SING N N 17
II0 C14 C20 SING N N 18
II0 C06 C08 SING N N 19
II0 C36 C38 SING N N 20
II0 C30 C32 SING N N 21
II0 C42 C41 DOUB N E 22
II0 C41 C39 SING N N 23
II0 C39 C35 DOUB N E 24
II0 C37 C35 SING N N 25
II0 C35 C33 SING N N 26
II0 C27 C25 SING N N 27
II0 C31 C33 DOUB N E 28
II0 C31 C29 SING N N 29
II0 C15 C03 SING N N 30
II0 C25 C29 DOUB N E 31
II0 C25 C23 SING N N 32
II0 C23 C21 TRIP N N 33
II0 C21 C09 SING N N 34
II0 C03 C16 SING N N 35
II0 C03 C09 SING N N 36
II0 C03 C05 SING N N 37
II0 C09 C13 DOUB N N 38
II0 C05 C07 SING N N 39
II0 C13 C19 SING N N 40
II0 C13 C11 SING N N 41
II0 C07 C11 SING N N 42
II0 C07 O01 SING N N 43
II0 C05 H1 SING N N 44
II0 C05 H2 SING N N 45
II0 C06 H3 SING N N 46
II0 C06 H4 SING N N 47
II0 C07 H5 SING N N 48
II0 C08 H6 SING N N 49
II0 C11 H8 SING N N 50
II0 C11 H9 SING N N 51
II0 C12 H10 SING N N 52
II0 C12 H11 SING N N 53
II0 C15 H13 SING N N 54
II0 C15 H14 SING N N 55
II0 C15 H15 SING N N 56
II0 C16 H16 SING N N 57
II0 C16 H17 SING N N 58
II0 C16 H18 SING N N 59
II0 C17 H19 SING N N 60
II0 C17 H20 SING N N 61
II0 C17 H21 SING N N 62
II0 C18 H22 SING N N 63
II0 C18 H23 SING N N 64
II0 C18 H24 SING N N 65
II0 C19 H25 SING N N 66
II0 C19 H26 SING N N 67
II0 C19 H27 SING N N 68
II0 C20 H28 SING N N 69
II0 C20 H29 SING N N 70
II0 C20 H30 SING N N 71
II0 C27 H31 SING N N 72
II0 C27 H32 SING N N 73
II0 C27 H33 SING N N 74
II0 C28 H34 SING N N 75
II0 C28 H35 SING N N 76
II0 C28 H36 SING N N 77
II0 C29 H37 SING N N 78
II0 C30 H38 SING N N 79
II0 C31 H39 SING N N 80
II0 C32 H40 SING N N 81
II0 C33 H41 SING N N 82
II0 C34 H42 SING N N 83
II0 C37 H43 SING N N 84
II0 C37 H44 SING N N 85
II0 C37 H45 SING N N 86
II0 C38 H46 SING N N 87
II0 C38 H47 SING N N 88
II0 C38 H48 SING N N 89
II0 C39 H49 SING N N 90
II0 C40 H50 SING N N 91
II0 C41 H51 SING N N 92
II0 C42 H52 SING N N 93
II0 O01 H53 SING N N 94
II0 O02 H54 SING N N 95
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
II0 InChI InChI 1.06 "InChI=1S/C40H52O2/c1-29(17-13-19-31(3)21-23-37-33(5)25-35(41)27-39(37,7)8)15-11-12-16-30(2)18-14-20-32(4)22-24-38-34(6)26-36(42)28-40(38,9)10/h11-20,35-36,41-42H,25-28H2,1-10H3/b12-11+,17-13+,18-14+,29-15+,30-16+,31-19+,32-20+/t35-,36-/m1/s1"
II0 InChIKey InChI 1.06 DVICWXUADSCSLL-DDEWRDOISA-N
II0 SMILES_CANONICAL CACTVS 3.385 "CC(=C\C=C\C=C(C)\C=C\C=C(C)\C#CC1=C(C)C[C@@H](O)CC1(C)C)/C=C/C=C(C)/C#CC2=C(C)C[C@@H](O)CC2(C)C"
II0 SMILES CACTVS 3.385 "CC(=CC=CC=C(C)C=CC=C(C)C#CC1=C(C)C[CH](O)CC1(C)C)C=CC=C(C)C#CC2=C(C)C[CH](O)CC2(C)C"
II0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(C[C@@H](C1)O)(C)C)C#C/C(=C/C=C/C(=C/C=C/C=C(/C=C/C=C(/C#CC2=C(C[C@H](CC2(C)C)O)C)\C)\C)/C)/C"
II0 SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(CC(C1)O)(C)C)C#CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C#CC2=C(CC(CC2(C)C)O)C)C)C"
#
_pdbx_chem_comp_identifier.comp_id II0
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
II0 "Create component" 2022-07-01 PDBJ
II0 "Initial release" 2023-04-12 RCSB
II0 "Modify synonyms" 2023-04-19 PDBJ
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id II0
_pdbx_chem_comp_synonyms.name Alloxanthin
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#