data_II1 # _chem_comp.id II1 _chem_comp.name "Aspergillomarasmine A" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H17 N3 O8" _chem_comp.mon_nstd_parent_comp_id ASP _chem_comp.pdbx_synonyms "N-[(2S)-2-{[(2S)-2-amino-2-carboxyethyl]amino}-2-carboxyethyl]-L-aspartic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-04 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 307.257 _chem_comp.one_letter_code D _chem_comp.three_letter_code II1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8SPM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal II1 N1 N1 N 0 1 N N N N N N -24.704 -5.147 -13.241 -1.295 0.467 -0.230 N1 II1 1 II1 C2 C1 C 0 1 N N S N N N -23.704 -5.793 -12.387 -0.491 1.063 0.845 C2 II1 2 II1 C3 C2 C 0 1 N N N N N N -22.393 -5.924 -13.187 0.945 1.262 0.356 C3 II1 3 II1 O3 O1 O 0 1 N N N N N N -23.533 -4.229 -15.563 4.273 0.733 -2.378 O3 II1 4 II1 C4 C3 C 0 1 N N S N N N -21.771 -5.820 -15.528 2.925 0.096 -0.410 C4 II1 5 II1 C5 C4 C 0 1 N N N N N N -21.773 -6.611 -16.848 3.614 -1.258 -0.237 C5 II1 6 II1 C6 C5 C 0 1 N N N N N N -23.117 -6.614 -17.551 3.590 -1.653 1.217 C6 II1 7 II1 N N2 N 0 1 N N N N N N -26.256 -4.958 -15.100 -3.647 0.159 -1.750 N II1 8 II1 C C6 C 0 1 N N S N N N -26.954 -4.667 -13.825 -3.232 -0.908 -0.829 C II1 9 II1 O O2 O 0 1 N N N N N N -23.038 -6.951 -18.836 3.074 -0.924 2.032 O II1 10 II1 C1 C7 C 0 1 N N N N N N -26.080 -5.343 -12.768 -2.419 -0.303 0.318 C1 II1 11 II1 C7 C8 C 0 1 N N N N N N -22.332 -4.431 -15.753 3.056 0.548 -1.842 C7 II1 12 II1 C8 C9 C 0 1 N N N N N N -23.479 -5.278 -10.959 -1.079 2.395 1.232 C8 II1 13 II1 C9 C10 C 0 1 N N N N N N -27.057 -3.192 -13.412 -4.453 -1.594 -0.272 C9 II1 14 II1 N2 N3 N 0 1 N N N N N N -22.676 -6.417 -14.545 1.502 -0.031 -0.066 N2 II1 15 II1 O1 O3 O 0 1 N N N N N N -24.171 -6.335 -16.978 4.141 -2.812 1.607 O1 II1 16 II1 O2 O4 O 0 1 N N N N N N -21.415 -3.528 -16.191 2.067 0.744 -2.507 O2 II1 17 II1 O4 O5 O 0 1 N N N N N N -24.018 -4.106 -10.699 -2.066 2.806 0.670 O4 II1 18 II1 O5 O6 O 0 1 N N N N N N -22.883 -5.938 -10.125 -0.505 3.126 2.201 O5 II1 19 II1 O6 O7 O 0 1 N N N N N N -26.894 -2.283 -14.369 -5.525 -1.038 -0.303 O6 II1 20 II1 O7 O8 O 0 1 N N N N N N -27.276 -2.905 -12.241 -4.349 -2.823 0.257 O7 II1 21 II1 H1 H1 H 0 1 N N N N N N -24.628 -5.526 -14.163 -0.725 -0.106 -0.834 H1 II1 22 II1 H3 H3 H 0 1 N N N N N N -24.055 -6.828 -12.258 -0.492 0.400 1.710 H3 II1 23 II1 H4 H4 H 0 1 N N N N N N -21.724 -6.631 -12.675 0.950 1.952 -0.486 H4 II1 24 II1 H5 H5 H 0 1 N N N N N N -21.906 -4.940 -13.251 1.551 1.671 1.165 H5 II1 25 II1 H6 H6 H 0 1 N N N N N N -23.739 -3.325 -15.771 4.307 1.023 -3.300 H6 II1 26 II1 H7 H7 H 0 1 N N N N N N -20.747 -5.756 -15.132 3.393 0.829 0.247 H7 II1 27 II1 H8 H8 H 0 1 N N N N N N -21.492 -7.652 -16.630 3.090 -2.011 -0.826 H8 II1 28 II1 H9 H9 H 0 1 N N N N N N -21.028 -6.164 -17.523 4.647 -1.186 -0.577 H9 II1 29 II1 H10 H10 H 0 1 N N N N N N -26.253 -5.945 -15.261 -4.216 0.844 -1.276 H10 II1 30 II1 H11 H11 H 0 1 N N N N N N -26.730 -4.499 -15.852 -2.847 0.592 -2.185 H11 II1 31 II1 H13 H13 H 0 1 N N N N N N -27.956 -5.122 -13.824 -2.620 -1.633 -1.365 H13 II1 32 II1 H14 H14 H 0 1 N N N N N N -26.224 -4.870 -11.785 -2.037 -1.103 0.953 H14 II1 33 II1 H15 H15 H 0 1 N N N N N N -26.317 -6.415 -12.697 -3.057 0.355 0.908 H15 II1 34 II1 H16 H16 H 0 1 N N N N N N -23.618 -6.184 -14.786 0.977 -0.416 -0.836 H16 II1 35 II1 H18 H18 H 0 1 N N N N N N -24.893 -6.400 -17.592 4.101 -3.022 2.551 H18 II1 36 II1 H19 H19 H 0 1 N N N N N N -22.880 -5.474 -9.296 -0.918 3.974 2.414 H19 II1 37 II1 H20 H20 H 0 1 N N N N N N -27.307 -1.960 -12.146 -5.159 -3.223 0.601 H20 II1 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal II1 O C6 DOUB N N 1 II1 C6 O1 SING N N 2 II1 C6 C5 SING N N 3 II1 C5 C4 SING N N 4 II1 O2 C7 DOUB N N 5 II1 C7 O3 SING N N 6 II1 C7 C4 SING N N 7 II1 C4 N2 SING N N 8 II1 N C SING N N 9 II1 N2 C3 SING N N 10 II1 O6 C9 DOUB N N 11 II1 C C9 SING N N 12 II1 C C1 SING N N 13 II1 C9 O7 SING N N 14 II1 N1 C1 SING N N 15 II1 N1 C2 SING N N 16 II1 C3 C2 SING N N 17 II1 C2 C8 SING N N 18 II1 C8 O4 DOUB N N 19 II1 C8 O5 SING N N 20 II1 N1 H1 SING N N 21 II1 C2 H3 SING N N 22 II1 C3 H4 SING N N 23 II1 C3 H5 SING N N 24 II1 O3 H6 SING N N 25 II1 C4 H7 SING N N 26 II1 C5 H8 SING N N 27 II1 C5 H9 SING N N 28 II1 N H10 SING N N 29 II1 N H11 SING N N 30 II1 C H13 SING N N 31 II1 C1 H14 SING N N 32 II1 C1 H15 SING N N 33 II1 N2 H16 SING N N 34 II1 O1 H18 SING N N 35 II1 O5 H19 SING N N 36 II1 O7 H20 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor II1 SMILES ACDLabs 12.01 "NC(CNC(CNC(CC(=O)O)C(=O)O)C(=O)O)C(=O)O" II1 InChI InChI 1.06 "InChI=1S/C10H17N3O8/c11-4(8(16)17)2-12-6(10(20)21)3-13-5(9(18)19)1-7(14)15/h4-6,12-13H,1-3,11H2,(H,14,15)(H,16,17)(H,18,19)(H,20,21)/t4-,5-,6-/m0/s1" II1 InChIKey InChI 1.06 XFTWUNOVBCHBJR-ZLUOBGJFSA-N II1 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CN[C@@H](CN[C@@H](CC(O)=O)C(O)=O)C(O)=O)C(O)=O" II1 SMILES CACTVS 3.385 "N[CH](CN[CH](CN[CH](CC(O)=O)C(O)=O)C(O)=O)C(O)=O" II1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H](C(=O)O)NC[C@@H](C(=O)O)NC[C@@H](C(=O)O)N)C(=O)O" II1 SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(=O)O)NCC(C(=O)O)NCC(C(=O)O)N)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier II1 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-2-{[(2S)-2-amino-2-carboxyethyl]amino}-2-carboxyethyl]-L-aspartic acid" II1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[(2~{S})-2-[[(2~{S})-2-azanyl-3-oxidanyl-3-oxidanylidene-propyl]amino]-3-oxidanyl-3-oxidanylidene-propyl]amino]butanedioic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id II1 _pdbx_chem_comp_synonyms.name "N-[(2S)-2-{[(2S)-2-amino-2-carboxyethyl]amino}-2-carboxyethyl]-L-aspartic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site II1 "Create component" 2023-05-04 RCSB II1 "Initial release" 2024-04-10 RCSB #