data_II9 # _chem_comp.id II9 _chem_comp.name "N-methyl-6-[(6-methylpyridine-2-carbonyl)amino]-2-phenyl-1H-benzimidazole-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H19 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-25 _chem_comp.pdbx_modified_date 2022-10-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code II9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5SEX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal II9 C10 C1 C 0 1 Y N N 95.922 -10.682 10.798 -1.078 -2.033 0.082 C10 II9 1 II9 C11 C2 C 0 1 Y N N 93.162 -10.601 11.393 -0.253 0.631 -0.184 C11 II9 2 II9 C15 C3 C 0 1 Y N N 93.725 -13.712 7.570 -5.241 0.624 -0.108 C15 II9 3 II9 C19 C4 C 0 1 Y N N 92.629 -5.827 15.461 6.011 0.981 -0.621 C19 II9 4 II9 C20 C5 C 0 1 Y N N 91.149 -8.123 15.772 4.385 2.635 0.813 C20 II9 5 II9 C21 C6 C 0 1 Y N N 90.956 -7.070 16.666 5.719 2.981 0.660 C21 II9 6 II9 C22 C7 C 0 1 Y N N 92.467 -13.691 6.957 -6.242 -0.341 -0.000 C22 II9 7 II9 C23 C8 C 0 1 Y N N 94.759 -14.489 7.036 -5.588 1.971 -0.227 C23 II9 8 II9 C24 C9 C 0 1 Y N N 91.698 -5.901 16.498 6.541 2.136 -0.070 C24 II9 9 II9 C25 C10 C 0 1 N N N 98.648 -8.382 13.300 1.898 -5.131 0.417 C25 II9 10 II9 C26 C11 C 0 1 N N N 93.476 -4.599 15.241 6.900 0.060 -1.415 C26 II9 11 II9 C27 C12 C 0 1 Y N N 92.225 -14.497 5.865 -7.568 0.040 -0.011 C27 II9 12 II9 C28 C13 C 0 1 Y N N 94.496 -15.302 5.947 -6.918 2.339 -0.236 C28 II9 13 II9 N1 N1 N 0 1 Y N N 93.038 -12.263 9.480 -2.755 1.084 -0.190 N1 II9 14 II9 C2 C14 C 0 1 Y N N 93.959 -12.795 8.700 -3.817 0.223 -0.091 C2 II9 15 II9 C3 C15 C 0 1 Y N N 95.437 -9.888 11.830 0.277 -1.720 0.026 C3 II9 16 II9 N4 N2 N 0 1 Y N N 95.196 -12.299 9.013 -3.383 -1.007 0.019 N4 II9 17 II9 C5 C16 C 0 1 Y N N 94.047 -9.851 12.133 0.688 -0.380 -0.107 C5 II9 18 II9 C6 C17 C 0 1 Y N N 93.645 -11.413 10.359 -1.606 0.324 -0.135 C6 II9 19 II9 C7 C18 C 0 1 Y N N 95.035 -11.436 10.077 -2.026 -1.015 -0.001 C7 II9 20 II9 C8 C19 C 0 1 N N N 92.378 -9.025 13.750 2.500 1.069 0.395 C8 II9 21 II9 N9 N3 N 0 1 N N N 93.578 -9.002 13.137 2.046 -0.071 -0.162 N9 II9 22 II9 C12 C20 C 0 1 N N N 96.403 -9.025 12.538 1.284 -2.793 0.108 C12 II9 23 II9 N13 N4 N 0 1 Y N N 92.797 -6.839 14.640 4.742 0.674 -0.456 N13 II9 24 II9 C14 C21 C 0 1 Y N N 92.101 -7.969 14.753 3.921 1.455 0.236 C14 II9 25 II9 O16 O1 O 0 1 N N N 91.547 -9.869 13.514 1.745 1.780 1.027 O16 II9 26 II9 O17 O2 O 0 1 N N N 95.979 -7.944 12.933 2.464 -2.532 -0.031 O17 II9 27 II9 N18 N5 N 0 1 N N N 97.729 -9.322 12.630 0.897 -4.064 0.336 N18 II9 28 II9 C29 C22 C 0 1 Y N N 93.240 -15.303 5.365 -7.906 1.376 -0.129 C29 II9 29 II9 H1 H1 H 0 1 N N N 96.977 -10.704 10.569 -1.393 -3.060 0.185 H1 II9 30 II9 H2 H2 H 0 1 N N N 92.104 -10.564 11.608 0.064 1.658 -0.287 H2 II9 31 II9 H3 H3 H 0 1 N N N 90.579 -9.036 15.862 3.716 3.270 1.375 H3 II9 32 II9 H4 H4 H 0 1 N N N 90.245 -7.158 17.474 6.109 3.887 1.099 H4 II9 33 II9 H5 H5 H 0 1 N N N 91.689 -13.046 7.338 -5.980 -1.385 0.091 H5 II9 34 II9 H6 H6 H 0 1 N N N 95.748 -14.455 7.468 -4.818 2.723 -0.310 H6 II9 35 II9 H7 H7 H 0 1 N N N 91.554 -5.062 17.163 7.585 2.377 -0.207 H7 II9 36 II9 H8 H8 H 0 1 N N N 99.670 -8.788 13.277 2.446 -5.188 -0.524 H8 II9 37 II9 H9 H9 H 0 1 N N N 98.627 -7.414 12.778 2.592 -4.917 1.230 H9 II9 38 II9 H10 H10 H 0 1 N N N 98.332 -8.243 14.344 1.401 -6.082 0.605 H10 II9 39 II9 H11 H11 H 0 1 N N N 94.137 -4.759 14.377 7.347 -0.678 -0.749 H11 II9 40 II9 H12 H12 H 0 1 N N N 92.824 -3.734 15.049 6.310 -0.449 -2.177 H12 II9 41 II9 H13 H13 H 0 1 N N N 94.084 -4.408 16.137 7.689 0.640 -1.895 H13 II9 42 II9 H14 H14 H 0 1 N N N 91.250 -14.502 5.400 -8.344 -0.707 0.073 H14 II9 43 II9 H15 H15 H 0 1 N N N 95.273 -15.938 5.550 -7.188 3.381 -0.327 H15 II9 44 II9 H16 H16 H 0 1 N N N 92.057 -12.451 9.435 -2.803 2.049 -0.282 H16 II9 45 II9 H18 H18 H 0 1 N N N 94.211 -8.289 13.439 2.664 -0.677 -0.601 H18 II9 46 II9 H19 H19 H 0 1 N N N 98.079 -10.176 12.244 -0.043 -4.272 0.447 H19 II9 47 II9 H20 H20 H 0 1 N N N 93.047 -15.938 4.513 -8.945 1.669 -0.137 H20 II9 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal II9 N1 C2 SING Y N 1 II9 N1 C6 SING Y N 2 II9 C2 N4 DOUB Y N 3 II9 C2 C15 SING N N 4 II9 C3 C5 DOUB Y N 5 II9 C3 C10 SING Y N 6 II9 C3 C12 SING N N 7 II9 N4 C7 SING Y N 8 II9 C5 N9 SING N N 9 II9 C5 C11 SING Y N 10 II9 C6 C11 DOUB Y N 11 II9 C6 C7 SING Y N 12 II9 C7 C10 DOUB Y N 13 II9 C8 N9 SING N N 14 II9 C8 O16 DOUB N N 15 II9 C8 C14 SING N N 16 II9 C12 N18 SING N N 17 II9 C12 O17 DOUB N N 18 II9 N13 C19 DOUB Y N 19 II9 N13 C14 SING Y N 20 II9 C14 C20 DOUB Y N 21 II9 C15 C22 DOUB Y N 22 II9 C15 C23 SING Y N 23 II9 N18 C25 SING N N 24 II9 C19 C26 SING N N 25 II9 C19 C24 SING Y N 26 II9 C20 C21 SING Y N 27 II9 C21 C24 DOUB Y N 28 II9 C22 C27 SING Y N 29 II9 C23 C28 DOUB Y N 30 II9 C27 C29 DOUB Y N 31 II9 C28 C29 SING Y N 32 II9 C10 H1 SING N N 33 II9 C11 H2 SING N N 34 II9 C20 H3 SING N N 35 II9 C21 H4 SING N N 36 II9 C22 H5 SING N N 37 II9 C23 H6 SING N N 38 II9 C24 H7 SING N N 39 II9 C25 H8 SING N N 40 II9 C25 H9 SING N N 41 II9 C25 H10 SING N N 42 II9 C26 H11 SING N N 43 II9 C26 H12 SING N N 44 II9 C26 H13 SING N N 45 II9 C27 H14 SING N N 46 II9 C28 H15 SING N N 47 II9 N1 H16 SING N N 48 II9 N9 H18 SING N N 49 II9 N18 H19 SING N N 50 II9 C29 H20 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor II9 SMILES ACDLabs 12.01 "Cc1cccc(n1)C(=O)Nc1cc2[NH]c(nc2cc1C(=O)NC)c1ccccc1" II9 InChI InChI 1.03 "InChI=1S/C22H19N5O2/c1-13-7-6-10-16(24-13)22(29)27-17-12-19-18(11-15(17)21(28)23-2)25-20(26-19)14-8-4-3-5-9-14/h3-12H,1-2H3,(H,23,28)(H,25,26)(H,27,29)" II9 InChIKey InChI 1.03 FEZUIXBPOZHUAQ-UHFFFAOYSA-N II9 SMILES_CANONICAL CACTVS 3.385 "CNC(=O)c1cc2nc([nH]c2cc1NC(=O)c3cccc(C)n3)c4ccccc4" II9 SMILES CACTVS 3.385 "CNC(=O)c1cc2nc([nH]c2cc1NC(=O)c3cccc(C)n3)c4ccccc4" II9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)C(=O)Nc2cc3c(cc2C(=O)NC)nc([nH]3)c4ccccc4" II9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)C(=O)Nc2cc3c(cc2C(=O)NC)nc([nH]3)c4ccccc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier II9 "SYSTEMATIC NAME" ACDLabs 12.01 "N-methyl-6-[(6-methylpyridine-2-carbonyl)amino]-2-phenyl-1H-benzimidazole-5-carboxamide" II9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-methyl-6-[(6-methylpyridin-2-yl)carbonylamino]-2-phenyl-1~{H}-benzimidazole-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site II9 "Create component" 2022-01-25 RCSB II9 "Initial release" 2022-10-12 RCSB #