data_IJ5 # _chem_comp.id IJ5 _chem_comp.name "(2~{R})-2-(2-chlorophenyl)-2-oxidanyl-ethanenitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H6 Cl N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(R)-2-chloromandelonitrile" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-04 _chem_comp.pdbx_modified_date 2024-01-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 167.592 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IJ5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7YCT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IJ5 N1 N1 N 0 1 N N N N N N -10.913 50.301 -3.289 -2.800 -0.091 -1.584 N1 IJ5 1 IJ5 C1 C1 C 0 1 N N N N N N -11.191 51.084 -2.467 -2.190 0.090 -0.642 C1 IJ5 2 IJ5 C2 C2 C 0 1 N N R N N N -11.364 51.916 -1.189 -1.401 0.325 0.578 C2 IJ5 3 IJ5 O1 O1 O 0 1 N N N N N N -12.469 51.334 -0.449 -1.857 1.518 1.218 O1 IJ5 4 IJ5 C3 C3 C 0 1 Y N N N N N -11.226 53.428 -1.462 0.054 0.475 0.214 C3 IJ5 5 IJ5 C4 C4 C 0 1 Y N N N N N -12.345 54.176 -1.855 0.593 1.734 0.026 C4 IJ5 6 IJ5 C5 C5 C 0 1 Y N N N N N -12.281 55.530 -2.140 1.929 1.872 -0.303 C5 IJ5 7 IJ5 C6 C6 C 0 1 Y N N N N N -11.080 56.204 -2.067 2.726 0.752 -0.444 C6 IJ5 8 IJ5 C7 C7 C 0 1 Y N N N N N -9.941 55.526 -1.713 2.188 -0.508 -0.256 C7 IJ5 9 IJ5 C8 C8 C 0 1 Y N N N N N -10.016 54.170 -1.433 0.851 -0.647 0.073 C8 IJ5 10 IJ5 CL1 CL1 CL 0 0 N N N N N N -8.494 53.444 -1.079 0.177 -2.228 0.316 CL1 IJ5 11 IJ5 H1 H1 H 0 1 N N N N N N -10.471 51.674 -0.594 -1.520 -0.520 1.256 H1 IJ5 12 IJ5 H2 H2 H 0 1 N N N N N N -12.607 51.825 0.353 -1.781 2.312 0.672 H2 IJ5 13 IJ5 H3 H3 H 0 1 N N N N N N -13.298 53.675 -1.939 -0.030 2.610 0.135 H3 IJ5 14 IJ5 H4 H4 H 0 1 N N N N N N -13.178 56.062 -2.421 2.349 2.856 -0.449 H4 IJ5 15 IJ5 H5 H5 H 0 1 N N N N N N -11.036 57.260 -2.287 3.769 0.860 -0.701 H5 IJ5 16 IJ5 H6 H6 H 0 1 N N N N N N -8.995 56.044 -1.653 2.810 -1.383 -0.367 H6 IJ5 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IJ5 N1 C1 TRIP N N 1 IJ5 C1 C2 SING N N 2 IJ5 C5 C6 DOUB Y N 3 IJ5 C5 C4 SING Y N 4 IJ5 C6 C7 SING Y N 5 IJ5 C4 C3 DOUB Y N 6 IJ5 C7 C8 DOUB Y N 7 IJ5 C3 C8 SING Y N 8 IJ5 C3 C2 SING N N 9 IJ5 C8 CL1 SING N N 10 IJ5 C2 O1 SING N N 11 IJ5 C2 H1 SING N N 12 IJ5 O1 H2 SING N N 13 IJ5 C4 H3 SING N N 14 IJ5 C5 H4 SING N N 15 IJ5 C6 H5 SING N N 16 IJ5 C7 H6 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IJ5 InChI InChI 1.06 "InChI=1S/C8H6ClNO/c9-7-4-2-1-3-6(7)8(11)5-10/h1-4,8,11H/t8-/m0/s1" IJ5 InChIKey InChI 1.06 ZECLJEYAWRQVIB-QMMMGPOBSA-N IJ5 SMILES_CANONICAL CACTVS 3.385 "O[C@@H](C#N)c1ccccc1Cl" IJ5 SMILES CACTVS 3.385 "O[CH](C#N)c1ccccc1Cl" IJ5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)[C@H](C#N)O)Cl" IJ5 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(C#N)O)Cl" # _pdbx_chem_comp_identifier.comp_id IJ5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-(2-chlorophenyl)-2-oxidanyl-ethanenitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IJ5 "Create component" 2022-07-04 PDBJ IJ5 "Initial release" 2024-01-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IJ5 _pdbx_chem_comp_synonyms.name "(R)-2-chloromandelonitrile" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #