data_IJ9 # _chem_comp.id IJ9 _chem_comp.name "(3~{R},5~{R})-5-[3-(4-bromophenyl)-1,2,4-oxadiazol-5-yl]-3-[2-[[methyl(prop-2-ynyl)amino]methyl]-1,3-thiazol-4-yl]pyrrolidin-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H20 Br N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-01 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.374 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IJ9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q0Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IJ9 C10 C1 C 0 1 N N R N N N 1.151 6.164 9.942 -3.176 -2.395 -0.169 C10 IJ9 1 IJ9 C12 C2 C 0 1 N N N N N N 2.177 5.362 10.098 -2.971 -2.845 1.294 C12 IJ9 2 IJ9 N13 N1 N 0 1 N N N N N N 2.104 4.221 8.969 -1.498 -2.827 1.487 N13 IJ9 3 IJ9 C14 C3 C 0 1 N N R N N N 0.658 4.260 8.560 -1.049 -1.612 0.760 C14 IJ9 4 IJ9 C01 C4 C 0 1 N N N N N N -2.994 12.510 9.381 -5.524 5.899 -0.883 C01 IJ9 5 IJ9 C02 C5 C 0 1 N N N N N N -1.774 12.788 9.400 -5.775 5.015 -0.153 C02 IJ9 6 IJ9 C03 C6 C 0 1 N N N N N N -0.284 13.136 9.452 -6.089 3.906 0.763 C03 IJ9 7 IJ9 C05 C7 C 0 1 N N N N N N 0.206 11.276 10.992 -4.077 2.683 0.198 C05 IJ9 8 IJ9 C06 C8 C 0 1 N N N N N N 0.294 10.945 8.537 -6.037 1.494 0.977 C06 IJ9 9 IJ9 C07 C9 C 0 1 Y N N N N N 1.138 9.723 8.857 -5.665 0.227 0.252 C07 IJ9 10 IJ9 C09 C10 C 0 1 Y N N N N N 1.604 7.612 9.467 -4.403 -1.527 -0.282 C09 IJ9 11 IJ9 C15 C11 C 0 1 Y N N N N N -0.055 3.069 9.237 0.413 -1.720 0.409 C15 IJ9 12 IJ9 C17 C12 C 0 1 Y N N N N N -1.460 1.670 10.050 2.473 -1.325 0.099 C17 IJ9 13 IJ9 C18 C13 C 0 1 Y N N N N N -2.639 1.105 10.398 3.795 -0.654 0.039 C18 IJ9 14 IJ9 C19 C14 C 0 1 Y N N N N N -3.706 1.970 10.788 3.928 0.669 0.458 C19 IJ9 15 IJ9 C20 C15 C 0 1 Y N N N N N -4.903 1.409 11.092 5.159 1.288 0.400 C20 IJ9 16 IJ9 C21 C16 C 0 1 Y N N N N N -5.053 0.071 11.006 6.262 0.598 -0.073 C21 IJ9 17 IJ9 C23 C17 C 0 1 Y N N N N N -3.989 -0.820 10.592 6.135 -0.715 -0.492 C23 IJ9 18 IJ9 C24 C18 C 0 1 Y N N N N N -2.783 -0.261 10.287 4.909 -1.345 -0.432 C24 IJ9 19 IJ9 C27 C19 C 0 1 N N N N N N 0.162 5.488 8.830 -1.912 -1.584 -0.520 C27 IJ9 20 IJ9 C28 C20 C 0 1 Y N N N N N 2.934 7.996 9.290 -5.409 -1.803 -1.117 C28 IJ9 21 IJ9 N04 N2 N 0 1 N N N N N N 0.547 11.930 9.645 -5.545 2.654 0.220 N04 IJ9 22 IJ9 N08 N3 N 0 1 Y N N N N N 0.692 8.546 9.234 -4.572 -0.435 0.436 N08 IJ9 23 IJ9 N16 N4 N 0 1 Y N N N N N -1.361 2.855 9.477 1.314 -0.778 0.531 N16 IJ9 24 IJ9 N25 N5 N 0 1 Y N N N N N -0.286 1.080 10.134 2.210 -2.556 -0.253 N25 IJ9 25 IJ9 O11 O1 O 0 1 N N N N N N 0.384 6.319 11.070 -3.292 -3.531 -1.028 O11 IJ9 26 IJ9 O26 O2 O 0 1 Y N N N N N 0.617 1.999 9.630 1.035 -2.798 -0.080 O26 IJ9 27 IJ9 S29 S1 S 0 1 Y N N N N N 2.870 9.648 8.813 -6.631 -0.547 -0.927 S29 IJ9 28 IJ9 BR22 BR1 BR 0 0 N N N N N N -6.797 -0.642 11.465 7.947 1.453 -0.150 BR22 IJ9 29 IJ9 H122 H1 H 0 0 N N N N N N 3.113 5.931 9.992 -3.453 -2.147 1.978 H122 IJ9 30 IJ9 H121 H2 H 0 0 N N N N N N 2.140 4.900 11.096 -3.363 -3.851 1.440 H121 IJ9 31 IJ9 H1 H3 H 0 1 N N N N N N 2.704 4.436 8.198 -1.263 -2.770 2.467 H1 IJ9 32 IJ9 H141 H5 H 0 0 N N N N N N 0.619 4.081 7.475 -1.230 -0.721 1.360 H141 IJ9 33 IJ9 H011 H6 H 0 0 N N N N N N -4.027 12.275 9.365 -5.300 6.690 -1.536 H011 IJ9 34 IJ9 H032 H7 H 0 0 N N N N N N 0.003 13.621 8.507 -5.644 4.102 1.738 H032 IJ9 35 IJ9 H031 H8 H 0 0 N N N N N N -0.108 13.829 10.288 -7.170 3.817 0.868 H031 IJ9 36 IJ9 H053 H9 H 0 0 N N N N N N 0.827 10.379 11.132 -3.702 1.774 -0.273 H053 IJ9 37 IJ9 H051 H10 H 0 0 N N N N N N 0.404 11.989 11.806 -3.739 3.551 -0.369 H051 IJ9 38 IJ9 H052 H11 H 0 0 N N N N N N -0.857 10.992 11.003 -3.699 2.746 1.218 H052 IJ9 39 IJ9 H062 H12 H 0 0 N N N N N N -0.772 10.674 8.503 -7.122 1.554 1.069 H062 IJ9 40 IJ9 H061 H13 H 0 0 N N N N N N 0.595 11.374 7.570 -5.588 1.491 1.970 H061 IJ9 41 IJ9 H191 H14 H 0 0 N N N N N N -3.564 3.039 10.839 3.068 1.208 0.828 H191 IJ9 42 IJ9 H201 H15 H 0 0 N N N N N N -5.731 2.030 11.401 5.263 2.313 0.725 H201 IJ9 43 IJ9 H231 H16 H 0 0 N N N N N N -4.145 -1.887 10.527 6.998 -1.249 -0.861 H231 IJ9 44 IJ9 H241 H17 H 0 0 N N N N N N -1.957 -0.877 9.965 4.812 -2.372 -0.754 H241 IJ9 45 IJ9 H272 H18 H 0 0 N N N N N N 0.147 6.099 7.916 -1.378 -2.053 -1.347 H272 IJ9 46 IJ9 H271 H19 H 0 0 N N N N N N -0.858 5.404 9.232 -2.178 -0.558 -0.774 H271 IJ9 47 IJ9 H281 H20 H 0 0 N N N N N N 3.815 7.386 9.424 -5.465 -2.647 -1.787 H281 IJ9 48 IJ9 H111 H22 H 0 0 N N N N N N -0.337 6.909 10.885 -4.057 -4.090 -0.840 H111 IJ9 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IJ9 C02 C01 TRIP N N 1 IJ9 C03 C02 SING N N 2 IJ9 N04 C03 SING N N 3 IJ9 C05 N04 SING N N 4 IJ9 C06 N04 SING N N 5 IJ9 C07 C06 SING N N 6 IJ9 N08 C07 DOUB Y N 7 IJ9 C09 N08 SING Y N 8 IJ9 O11 C10 SING N N 9 IJ9 C12 C10 SING N N 10 IJ9 N13 C12 SING N N 11 IJ9 C14 N13 SING N N 12 IJ9 N16 C15 DOUB Y N 13 IJ9 C17 N16 SING Y N 14 IJ9 C19 C18 DOUB Y N 15 IJ9 C20 C19 SING Y N 16 IJ9 C21 C20 DOUB Y N 17 IJ9 BR22 C21 SING N N 18 IJ9 C23 C21 SING Y N 19 IJ9 C24 C23 DOUB Y N 20 IJ9 C18 C17 SING N N 21 IJ9 N25 C17 DOUB Y N 22 IJ9 O26 N25 SING Y N 23 IJ9 C15 C14 SING N N 24 IJ9 C27 C14 SING N N 25 IJ9 C10 C09 SING N N 26 IJ9 C28 C09 DOUB Y N 27 IJ9 S29 C28 SING Y N 28 IJ9 C07 S29 SING Y N 29 IJ9 C10 C27 SING N N 30 IJ9 C15 O26 SING Y N 31 IJ9 C18 C24 SING Y N 32 IJ9 C12 H122 SING N N 33 IJ9 C12 H121 SING N N 34 IJ9 N13 H1 SING N N 35 IJ9 C14 H141 SING N N 36 IJ9 C01 H011 SING N N 37 IJ9 C03 H032 SING N N 38 IJ9 C03 H031 SING N N 39 IJ9 C05 H053 SING N N 40 IJ9 C05 H051 SING N N 41 IJ9 C05 H052 SING N N 42 IJ9 C06 H062 SING N N 43 IJ9 C06 H061 SING N N 44 IJ9 C19 H191 SING N N 45 IJ9 C20 H201 SING N N 46 IJ9 C23 H231 SING N N 47 IJ9 C24 H241 SING N N 48 IJ9 C27 H272 SING N N 49 IJ9 C27 H271 SING N N 50 IJ9 C28 H281 SING N N 51 IJ9 O11 H111 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IJ9 InChI InChI 1.06 "InChI=1S/C20H20BrN5O2S/c1-3-8-26(2)10-17-23-16(11-29-17)20(27)9-15(22-12-20)19-24-18(25-28-19)13-4-6-14(21)7-5-13/h1,4-7,11,15,22,27H,8-10,12H2,2H3/t15-,20-/m1/s1" IJ9 InChIKey InChI 1.06 JXDHMKNOEOYBOX-FOIQADDNSA-N IJ9 SMILES_CANONICAL CACTVS 3.385 "CN(CC#C)Cc1scc(n1)[C@]2(O)CN[C@H](C2)c3onc(n3)c4ccc(Br)cc4" IJ9 SMILES CACTVS 3.385 "CN(CC#C)Cc1scc(n1)[C]2(O)CN[CH](C2)c3onc(n3)c4ccc(Br)cc4" IJ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1nc(cs1)[C@]2(C[C@@H](NC2)c3nc(no3)c4ccc(cc4)Br)O" IJ9 SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1nc(cs1)C2(CC(NC2)c3nc(no3)c4ccc(cc4)Br)O" # _pdbx_chem_comp_identifier.comp_id IJ9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R},5~{R})-5-[3-(4-bromophenyl)-1,2,4-oxadiazol-5-yl]-3-[2-[[methyl(prop-2-ynyl)amino]methyl]-1,3-thiazol-4-yl]pyrrolidin-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IJ9 "Create component" 2023-08-01 PDBE IJ9 "Initial release" 2024-08-07 RCSB #