data_IK5 # _chem_comp.id IK5 _chem_comp.name "(3~{R},5~{R})-5-[3-[2-azanyl-4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl]-3-[2-[[methyl(prop-2-ynyl)amino]methyl]-1,3-thiazol-4-yl]pyrrolidin-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H21 F3 N6 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-01 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 478.491 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IK5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q13 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IK5 C13 C1 C 0 1 N N N N N N 0.114 5.496 9.066 -1.682 -0.817 0.011 C13 IK5 1 IK5 C12 C2 C 0 1 N N R N N N 1.113 6.079 10.098 -2.686 -1.992 0.048 C12 IK5 2 IK5 C01 C3 C 0 1 N N N N N N 0.359 11.357 11.012 -5.168 2.530 0.407 C01 IK5 3 IK5 C03 C4 C 0 1 N N N N N N -0.040 13.094 9.454 -7.529 3.041 0.572 C03 IK5 4 IK5 C04 C5 C 0 1 N N N N N N -1.545 12.830 9.463 -7.402 4.281 -0.211 C04 IK5 5 IK5 C05 C6 C 0 1 N N N N N N -2.715 12.627 9.475 -7.302 5.270 -0.836 C05 IK5 6 IK5 C06 C7 C 0 1 N N N N N N 0.396 10.885 8.682 -6.776 0.743 0.699 C06 IK5 7 IK5 C07 C8 C 0 1 Y N N N N N 1.215 9.625 8.940 -5.896 -0.277 0.024 C07 IK5 8 IK5 C09 C9 C 0 1 Y N N N N N 1.616 7.490 9.559 -4.075 -1.517 -0.293 C09 IK5 9 IK5 C10 C10 C 0 1 Y N N N N N 2.940 7.764 9.246 -4.766 -1.990 -1.335 C10 IK5 10 IK5 C14 C11 C 0 1 N N R N N N 0.682 4.069 8.682 -0.742 -1.054 1.207 C14 IK5 11 IK5 C16 C12 C 0 1 N N N N N N 2.136 5.182 10.228 -2.615 -2.463 1.522 C16 IK5 12 IK5 C17 C13 C 0 1 Y N N N N N 0.001 2.853 9.311 0.680 -1.187 0.725 C17 IK5 13 IK5 C19 C14 C 0 1 Y N N N N N -1.529 1.487 9.989 2.721 -0.841 0.266 C19 IK5 14 IK5 C22 C15 C 0 1 Y N N N N N -2.774 0.934 10.256 4.059 -0.216 0.141 C22 IK5 15 IK5 C23 C16 C 0 1 Y N N N N N -2.973 -0.424 10.063 4.283 1.064 0.642 C23 IK5 16 IK5 C24 C17 C 0 1 Y N N N N N -4.210 -0.992 10.323 5.530 1.642 0.523 C24 IK5 17 IK5 C25 C18 C 0 1 Y N N N N N -5.252 -0.194 10.768 6.562 0.956 -0.093 C25 IK5 18 IK5 C26 C19 C 0 1 Y N N N N N -5.054 1.161 10.962 6.353 -0.314 -0.595 C26 IK5 19 IK5 C27 C20 C 0 1 Y N N N N N -3.819 1.728 10.706 5.106 -0.911 -0.477 C27 IK5 20 IK5 C29 C21 C 0 1 N N N N N N -6.625 -0.791 11.061 7.920 1.597 -0.218 C29 IK5 21 IK5 F30 F1 F 0 1 N N N N N N -7.475 -0.498 10.034 7.889 2.872 0.357 F30 IK5 22 IK5 F31 F2 F 0 1 N N N N N N -6.529 -2.142 11.220 8.870 0.811 0.442 F31 IK5 23 IK5 F32 F3 F 0 1 N N N N N N -7.109 -0.235 12.206 8.263 1.704 -1.570 F32 IK5 24 IK5 N02 N1 N 0 1 N N N N N N 0.707 11.874 9.701 -6.530 2.067 0.111 N02 IK5 25 IK5 N08 N2 N 0 1 Y N N N N N 0.755 8.475 9.388 -4.710 -0.603 0.414 N08 IK5 26 IK5 N15 N3 N 0 1 N N N N N N 1.968 4.056 9.053 -1.176 -2.309 1.859 N15 IK5 27 IK5 N18 N4 N 0 1 Y N N N N N -1.301 2.647 9.396 1.626 -0.288 0.836 N18 IK5 28 IK5 N20 N5 N 0 1 Y N N N N N -0.368 0.927 10.271 2.379 -2.034 -0.150 N20 IK5 29 IK5 N28 N6 N 0 1 N N N N N N -3.639 3.151 10.915 4.894 -2.194 -0.977 N28 IK5 30 IK5 O21 O1 O 0 1 Y N N N N N 0.606 1.781 9.845 1.212 -2.246 0.107 O21 IK5 31 IK5 O33 O2 O 0 1 N N N N N N 0.452 6.260 11.319 -2.278 -3.034 -0.840 O33 IK5 32 IK5 S11 S1 S 0 1 Y N N N N N 2.912 9.413 8.724 -6.328 -1.176 -1.364 S11 IK5 33 IK5 H132 H1 H 0 0 N N N N N N 0.062 6.140 8.176 -1.119 -0.830 -0.922 H132 IK5 34 IK5 H131 H2 H 0 0 N N N N N N -0.888 5.403 9.511 -2.206 0.132 0.123 H131 IK5 35 IK5 H013 H3 H 0 0 N N N N N N 0.923 10.432 11.204 -5.055 2.664 1.483 H013 IK5 36 IK5 H011 H4 H 0 0 N N N N N N 0.609 12.105 11.779 -4.449 1.790 0.055 H011 IK5 37 IK5 H012 H5 H 0 0 N N N N N N -0.719 11.143 11.047 -4.989 3.479 -0.098 H012 IK5 38 IK5 H032 H6 H 0 0 N N N N N N 0.248 13.499 8.472 -7.363 3.260 1.627 H032 IK5 39 IK5 H031 H7 H 0 0 N N N N N N 0.201 13.827 10.238 -8.528 2.628 0.439 H031 IK5 40 IK5 H051 H8 H 0 0 N N N N N N -3.759 12.446 9.486 -7.212 6.154 -1.395 H051 IK5 41 IK5 H061 H9 H 0 0 N N N N N N -0.676 10.641 8.721 -7.822 0.472 0.558 H061 IK5 42 IK5 H062 H10 H 0 0 N N N N N N 0.645 11.289 7.689 -6.548 0.771 1.765 H062 IK5 43 IK5 H101 H11 H 0 0 N N N N N N 3.790 7.102 9.313 -4.427 -2.740 -2.033 H101 IK5 44 IK5 H141 H12 H 0 0 N N N N N N 0.598 3.971 7.590 -0.819 -0.225 1.911 H141 IK5 45 IK5 H161 H13 H 0 0 N N N N N N 2.088 4.701 11.216 -3.229 -1.827 2.160 H161 IK5 46 IK5 H162 H14 H 0 0 N N N N N N 3.102 5.697 10.117 -2.920 -3.506 1.608 H162 IK5 47 IK5 H231 H15 H 0 0 N N N N N N -2.161 -1.042 9.709 3.481 1.604 1.123 H231 IK5 48 IK5 H241 H16 H 0 0 N N N N N N -4.361 -2.052 10.180 5.702 2.635 0.912 H241 IK5 49 IK5 H261 H17 H 0 0 N N N N N N -5.867 1.778 11.315 7.162 -0.845 -1.075 H261 IK5 50 IK5 H2 H19 H 0 1 N N N N N N 2.553 4.282 8.274 -1.041 -2.263 2.858 H2 IK5 51 IK5 H282 H21 H 0 0 N N N N N N -2.699 3.406 10.688 4.021 -2.608 -0.898 H282 IK5 52 IK5 H281 H22 H 0 0 N N N N N N -4.272 3.657 10.329 5.621 -2.674 -1.405 H281 IK5 53 IK5 H331 H23 H 0 0 N N N N N N 0.150 5.420 11.644 -2.875 -3.795 -0.854 H331 IK5 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IK5 N02 C01 SING N N 1 IK5 C04 C03 SING N N 2 IK5 C05 C04 TRIP N N 3 IK5 C03 N02 SING N N 4 IK5 C06 N02 SING N N 5 IK5 C07 C06 SING N N 6 IK5 N08 C07 DOUB Y N 7 IK5 C09 N08 SING Y N 8 IK5 S11 C10 SING Y N 9 IK5 C10 C09 DOUB Y N 10 IK5 C12 C09 SING N N 11 IK5 C14 C13 SING N N 12 IK5 C16 N15 SING N N 13 IK5 N15 C14 SING N N 14 IK5 C17 C14 SING N N 15 IK5 N18 C17 DOUB Y N 16 IK5 C19 N18 SING Y N 17 IK5 O21 N20 SING Y N 18 IK5 N20 C19 DOUB Y N 19 IK5 C22 C19 SING N N 20 IK5 C23 C22 DOUB Y N 21 IK5 C24 C23 SING Y N 22 IK5 C25 C24 DOUB Y N 23 IK5 C27 C26 DOUB Y N 24 IK5 N28 C27 SING N N 25 IK5 C26 C25 SING Y N 26 IK5 C29 C25 SING N N 27 IK5 F30 C29 SING N N 28 IK5 F31 C29 SING N N 29 IK5 F32 C29 SING N N 30 IK5 C13 C12 SING N N 31 IK5 O33 C12 SING N N 32 IK5 C07 S11 SING Y N 33 IK5 C12 C16 SING N N 34 IK5 C17 O21 SING Y N 35 IK5 C22 C27 SING Y N 36 IK5 C13 H132 SING N N 37 IK5 C13 H131 SING N N 38 IK5 C01 H013 SING N N 39 IK5 C01 H011 SING N N 40 IK5 C01 H012 SING N N 41 IK5 C03 H032 SING N N 42 IK5 C03 H031 SING N N 43 IK5 C05 H051 SING N N 44 IK5 C06 H061 SING N N 45 IK5 C06 H062 SING N N 46 IK5 C10 H101 SING N N 47 IK5 C14 H141 SING N N 48 IK5 C16 H161 SING N N 49 IK5 C16 H162 SING N N 50 IK5 C23 H231 SING N N 51 IK5 C24 H241 SING N N 52 IK5 C26 H261 SING N N 53 IK5 N15 H2 SING N N 54 IK5 N28 H282 SING N N 55 IK5 N28 H281 SING N N 56 IK5 O33 H331 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IK5 InChI InChI 1.06 "InChI=1S/C21H21F3N6O2S/c1-3-6-30(2)9-17-27-16(10-33-17)20(31)8-15(26-11-20)19-28-18(29-32-19)13-5-4-12(7-14(13)25)21(22,23)24/h1,4-5,7,10,15,26,31H,6,8-9,11,25H2,2H3/t15-,20-/m1/s1" IK5 InChIKey InChI 1.06 SGWUDBLAHJGXJU-FOIQADDNSA-N IK5 SMILES_CANONICAL CACTVS 3.385 "CN(CC#C)Cc1scc(n1)[C@]2(O)CN[C@H](C2)c3onc(n3)c4ccc(cc4N)C(F)(F)F" IK5 SMILES CACTVS 3.385 "CN(CC#C)Cc1scc(n1)[C]2(O)CN[CH](C2)c3onc(n3)c4ccc(cc4N)C(F)(F)F" IK5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1nc(cs1)[C@]2(C[C@@H](NC2)c3nc(no3)c4ccc(cc4N)C(F)(F)F)O" IK5 SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC#C)Cc1nc(cs1)C2(CC(NC2)c3nc(no3)c4ccc(cc4N)C(F)(F)F)O" # _pdbx_chem_comp_identifier.comp_id IK5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{R},5~{R})-5-[3-[2-azanyl-4-(trifluoromethyl)phenyl]-1,2,4-oxadiazol-5-yl]-3-[2-[[methyl(prop-2-ynyl)amino]methyl]-1,3-thiazol-4-yl]pyrrolidin-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IK5 "Create component" 2023-08-01 PDBE IK5 "Initial release" 2024-08-07 RCSB #