data_IK7 # _chem_comp.id IK7 _chem_comp.name Ridinilazole _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H16 N6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-pyridin-4-yl-5-(2-pyridin-4-yl-1H-benzimidazol-5-yl)-1H-benzimidazole" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-03-25 _chem_comp.pdbx_modified_date 2023-03-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.424 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IK7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Z9P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IK7 N1 N1 N 0 1 Y N N -17.817 -12.912 -10.090 4.646 1.454 0.004 N1 IK7 1 IK7 N3 N2 N 0 1 Y N N -29.271 -5.259 -6.790 -9.372 0.536 0.001 N3 IK7 2 IK7 C5 C1 C 0 1 Y N N -18.807 -11.947 -10.251 3.278 1.270 0.003 C5 IK7 3 IK7 C6 C2 C 0 1 Y N N -18.882 -10.855 -11.113 2.192 2.137 0.001 C6 IK7 4 IK7 C7 C3 C 0 1 Y N N -19.995 -10.049 -11.054 0.919 1.642 -0.000 C7 IK7 5 IK7 C8 C4 C 0 1 Y N N -21.067 -10.295 -10.159 0.695 0.261 0.001 C8 IK7 6 IK7 C10 C5 C 0 1 Y N N -22.746 -8.817 -11.331 -0.919 -1.642 0.002 C10 IK7 7 IK7 C13 C6 C 0 1 Y N N -26.079 -7.382 -8.707 -5.222 -0.212 0.002 C13 IK7 8 IK7 C15 C7 C 0 1 Y N N -28.243 -6.139 -8.768 -7.173 1.359 -0.003 C15 IK7 9 IK7 C17 C8 C 0 1 Y N N -28.262 -5.780 -6.095 -8.948 -0.713 0.005 C17 IK7 10 IK7 C20 C9 C 0 1 Y N N -23.062 -9.288 -8.985 -1.765 0.621 -0.001 C20 IK7 11 IK7 C21 C10 C 0 1 Y N N -20.983 -11.406 -9.324 1.765 -0.621 0.004 C21 IK7 12 IK7 C22 C11 C 0 1 Y N N -19.854 -12.204 -9.366 3.070 -0.122 0.005 C22 IK7 13 IK7 C24 C12 C 0 1 Y N N -17.662 -17.149 -7.726 8.948 0.713 -0.005 C24 IK7 14 IK7 C23 C13 C 0 1 Y N N -18.317 -16.015 -8.168 7.599 1.003 -0.003 C23 IK7 15 IK7 C2 C14 C 0 1 Y N N -16.205 -15.081 -8.680 7.173 -1.359 0.005 C2 IK7 16 IK7 C1 C15 C 0 1 Y N N -15.636 -16.244 -8.204 8.538 -1.558 -0.004 C1 IK7 17 IK7 C19 C16 C 0 1 Y N N -24.211 -8.512 -9.025 -3.070 0.122 -0.001 C19 IK7 18 IK7 C16 C17 C 0 1 Y N N -29.245 -5.445 -8.113 -8.539 1.558 -0.004 C16 IK7 19 IK7 C12 C18 C 0 1 Y N N -24.619 -7.891 -10.209 -3.278 -1.270 -0.010 C12 IK7 20 IK7 C14 C19 C 0 1 Y N N -27.222 -6.717 -8.031 -6.678 0.050 0.002 C14 IK7 21 IK7 C18 C20 C 0 1 Y N N -27.221 -6.494 -6.664 -7.599 -1.003 0.005 C18 IK7 22 IK7 C9 C21 C 0 1 Y N N -22.297 -9.442 -10.145 -0.695 -0.261 0.001 C9 IK7 23 IK7 C11 C22 C 0 1 Y N N -23.881 -8.047 -11.379 -2.192 -2.137 -0.003 C11 IK7 24 IK7 C3 C23 C 0 1 Y N N -17.579 -14.935 -8.628 6.678 -0.051 0.002 C3 IK7 25 IK7 C4 C24 C 0 1 Y N N -18.266 -13.710 -9.123 5.222 0.212 0.006 C4 IK7 26 IK7 N2 N3 N 0 1 Y N N -25.776 -7.165 -9.980 -4.646 -1.454 -0.008 N2 IK7 27 IK7 N4 N4 N 0 1 Y N N -25.152 -8.153 -8.075 -4.291 0.709 -0.003 N4 IK7 28 IK7 N5 N5 N 0 1 Y N N -19.483 -13.331 -8.664 4.291 -0.709 0.007 N5 IK7 29 IK7 N6 N6 N 0 1 Y N N -16.337 -17.283 -7.733 9.372 -0.536 -0.009 N6 IK7 30 IK7 H1 H1 H 0 1 N N N -16.955 -12.989 -10.592 5.113 2.304 -0.001 H1 IK7 31 IK7 H2 H2 H 0 1 N N N -18.085 -10.646 -11.811 2.355 3.205 -0.000 H2 IK7 32 IK7 H3 H3 H 0 1 N N N -20.055 -9.196 -11.714 0.080 2.321 -0.002 H3 IK7 33 IK7 H4 H4 H 0 1 N N N -22.172 -8.951 -12.236 -0.080 -2.321 0.003 H4 IK7 34 IK7 H5 H5 H 0 1 N N N -28.257 -6.229 -9.844 -6.496 2.201 -0.007 H5 IK7 35 IK7 H6 H6 H 0 1 N N N -28.255 -5.637 -5.024 -9.666 -1.519 0.008 H6 IK7 36 IK7 H7 H7 H 0 1 N N N -22.761 -9.769 -8.066 -1.590 1.687 -0.002 H7 IK7 37 IK7 H8 H8 H 0 1 N N N -21.792 -11.643 -8.649 1.590 -1.687 0.005 H8 IK7 38 IK7 H9 H9 H 0 1 N N N -18.257 -17.971 -7.355 9.666 1.519 -0.010 H9 IK7 39 IK7 H10 H10 H 0 1 N N N -19.396 -15.970 -8.155 7.259 2.028 -0.005 H10 IK7 40 IK7 H11 H11 H 0 1 N N N -15.586 -14.295 -9.088 6.496 -2.201 0.009 H11 IK7 41 IK7 H12 H12 H 0 1 N N N -14.559 -16.321 -8.212 8.930 -2.565 -0.002 H12 IK7 42 IK7 H13 H13 H 0 1 N N N -30.050 -5.031 -8.703 -8.930 2.565 -0.008 H13 IK7 43 IK7 H14 H14 H 0 1 N N N -26.418 -6.873 -6.049 -7.259 -2.028 0.010 H14 IK7 44 IK7 H15 H15 H 0 1 N N N -24.193 -7.575 -12.299 -2.355 -3.205 -0.002 H15 IK7 45 IK7 H16 H16 H 0 1 N N N -26.276 -6.598 -10.635 -5.113 -2.304 -0.012 H16 IK7 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IK7 C11 C10 DOUB Y N 1 IK7 C11 C12 SING Y N 2 IK7 C10 C9 SING Y N 3 IK7 C6 C7 DOUB Y N 4 IK7 C6 C5 SING Y N 5 IK7 C7 C8 SING Y N 6 IK7 C5 N1 SING Y N 7 IK7 C5 C22 DOUB Y N 8 IK7 C12 N2 SING Y N 9 IK7 C12 C19 DOUB Y N 10 IK7 C8 C9 SING N N 11 IK7 C8 C21 DOUB Y N 12 IK7 C9 C20 DOUB Y N 13 IK7 N1 C4 SING Y N 14 IK7 N2 C13 SING Y N 15 IK7 C22 C21 SING Y N 16 IK7 C22 N5 SING Y N 17 IK7 C4 N5 DOUB Y N 18 IK7 C4 C3 SING N N 19 IK7 C19 C20 SING Y N 20 IK7 C19 N4 SING Y N 21 IK7 C15 C16 DOUB Y N 22 IK7 C15 C14 SING Y N 23 IK7 C13 N4 DOUB Y N 24 IK7 C13 C14 SING N N 25 IK7 C2 C3 DOUB Y N 26 IK7 C2 C1 SING Y N 27 IK7 C3 C23 SING Y N 28 IK7 C1 N6 DOUB Y N 29 IK7 C23 C24 DOUB Y N 30 IK7 C16 N3 SING Y N 31 IK7 C14 C18 DOUB Y N 32 IK7 N6 C24 SING Y N 33 IK7 N3 C17 DOUB Y N 34 IK7 C18 C17 SING Y N 35 IK7 N1 H1 SING N N 36 IK7 C6 H2 SING N N 37 IK7 C7 H3 SING N N 38 IK7 C10 H4 SING N N 39 IK7 C15 H5 SING N N 40 IK7 C17 H6 SING N N 41 IK7 C20 H7 SING N N 42 IK7 C21 H8 SING N N 43 IK7 C24 H9 SING N N 44 IK7 C23 H10 SING N N 45 IK7 C2 H11 SING N N 46 IK7 C1 H12 SING N N 47 IK7 C16 H13 SING N N 48 IK7 C18 H14 SING N N 49 IK7 C11 H15 SING N N 50 IK7 N2 H16 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IK7 InChI InChI 1.06 "InChI=1S/C24H16N6/c1-3-19-21(29-23(27-19)15-5-9-25-10-6-15)13-17(1)18-2-4-20-22(14-18)30-24(28-20)16-7-11-26-12-8-16/h1-14H,(H,27,29)(H,28,30)" IK7 InChIKey InChI 1.06 UHQFBTAJFNVZIV-UHFFFAOYSA-N IK7 SMILES_CANONICAL CACTVS 3.385 "[nH]1c2ccc(cc2nc1c3ccncc3)c4ccc5[nH]c(nc5c4)c6ccncc6" IK7 SMILES CACTVS 3.385 "[nH]1c2ccc(cc2nc1c3ccncc3)c4ccc5[nH]c(nc5c4)c6ccncc6" IK7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1c3ccc4c(c3)nc([nH]4)c5ccncc5)nc([nH]2)c6ccncc6" IK7 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1c3ccc4c(c3)nc([nH]4)c5ccncc5)nc([nH]2)c6ccncc6" # _pdbx_chem_comp_identifier.comp_id IK7 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-pyridin-4-yl-5-(2-pyridin-4-yl-1~{H}-benzimidazol-5-yl)-1~{H}-benzimidazole" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IK7 _pdbx_chem_comp_synonyms.name "2-pyridin-4-yl-5-(2-pyridin-4-yl-1H-benzimidazol-5-yl)-1H-benzimidazole" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IK7 "Create component" 2022-03-25 PDBE IK7 "Modify descriptor" 2022-08-22 RCSB IK7 "Initial release" 2023-03-29 RCSB #