data_ILJ # _chem_comp.id ILJ _chem_comp.name "(E)-[7-azanyl-10-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-5,5-dimethyl-benzo[b][1]benzosilin-3-ylidene]-methyl-azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H43 Cl N3 O5 Si" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "HaloTag with TRaQ-G-ctrl ligand" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-03-31 _chem_comp.pdbx_modified_date 2023-01-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 637.261 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ILJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZBB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ILJ C01 C1 C 0 1 N N N -21.817 40.723 21.131 -3.385 0.643 2.745 C01 ILJ 1 ILJ C02 C2 C 0 1 Y N N -17.430 41.281 18.978 -6.425 2.388 0.333 C02 ILJ 2 ILJ C03 C3 C 0 1 Y N N -16.237 40.972 19.643 -7.599 1.683 0.077 C03 ILJ 3 ILJ C04 C4 C 0 1 Y N N -16.195 39.940 20.578 -7.532 0.311 -0.196 C04 ILJ 4 ILJ C05 C5 C 0 1 Y N N -17.350 39.212 20.861 -6.331 -0.293 -0.204 C05 ILJ 5 ILJ C06 C6 C 0 1 Y N N -18.545 39.522 20.190 -5.120 0.391 0.051 C06 ILJ 6 ILJ C07 C7 C 0 1 Y N N -18.589 40.560 19.250 -5.211 1.770 0.324 C07 ILJ 7 ILJ C08 C8 C 0 1 N N N -19.854 38.751 20.464 -3.832 -0.272 0.039 C08 ILJ 8 ILJ C09 C9 C 0 1 N N N -19.979 37.611 21.479 -3.401 -1.571 -0.185 C09 ILJ 9 ILJ C10 C10 C 0 1 N N N -18.915 37.137 22.237 -4.294 -2.640 -0.487 C10 ILJ 10 ILJ C11 C11 C 0 1 N N N -19.148 36.088 23.128 -3.900 -3.895 -0.705 C11 ILJ 11 ILJ C12 C12 C 0 1 N N N -20.428 35.527 23.239 -2.465 -4.203 -0.631 C12 ILJ 12 ILJ C13 C13 C 0 1 N N N -21.484 36.005 22.470 -1.543 -3.109 -0.321 C13 ILJ 13 ILJ C14 C14 C 0 1 N N N -21.266 37.054 21.589 -2.011 -1.862 -0.112 C14 ILJ 14 ILJ C18 C15 C 0 1 N N N -16.686 38.525 23.762 -6.782 -2.512 -2.254 C18 ILJ 15 ILJ C19 C16 C 0 1 N N N -15.983 36.603 21.502 -7.068 -3.114 0.706 C19 ILJ 16 ILJ C20 C17 C 0 1 Y N N -21.052 38.961 19.521 -2.721 0.649 0.331 C20 ILJ 17 ILJ C21 C18 C 0 1 Y N N -22.010 39.911 19.838 -2.500 1.097 1.651 C21 ILJ 18 ILJ C22 C19 C 0 1 Y N N -23.099 40.084 18.987 -1.448 1.968 1.920 C22 ILJ 19 ILJ C23 C20 C 0 1 Y N N -23.223 39.309 17.830 -0.621 2.393 0.899 C23 ILJ 20 ILJ C24 C21 C 0 1 Y N N -22.292 38.312 17.538 -0.834 1.955 -0.410 C24 ILJ 21 ILJ C25 C22 C 0 1 Y N N -21.184 38.183 18.378 -1.878 1.079 -0.694 C25 ILJ 22 ILJ C26 C23 C 0 1 N N N -22.281 37.456 16.247 0.058 2.418 -1.497 C26 ILJ 23 ILJ C29 C24 C 0 1 N N N -24.533 37.965 15.069 1.955 3.720 -2.300 C29 ILJ 24 ILJ C30 C25 C 0 1 N N N -25.504 36.763 14.834 3.015 4.661 -1.724 C30 ILJ 25 ILJ C32 C26 C 0 1 N N N -25.817 34.503 14.192 4.888 4.729 -0.230 C32 ILJ 26 ILJ C33 C27 C 0 1 N N N -26.408 34.003 12.851 5.725 3.855 0.707 C33 ILJ 27 ILJ C35 C28 C 0 1 N N N -25.532 31.777 12.580 7.222 1.984 0.729 C35 ILJ 28 ILJ C36 C29 C 0 1 N N N -24.543 30.999 11.645 7.902 0.963 -0.186 C36 ILJ 29 ILJ C37 C30 C 0 1 N N N -24.929 31.016 10.137 8.774 0.027 0.654 C37 ILJ 30 ILJ C38 C31 C 0 1 N N N -23.938 30.237 9.237 9.453 -0.994 -0.261 C38 ILJ 31 ILJ C39 C32 C 0 1 N N N -24.192 30.483 7.732 10.326 -1.930 0.579 C39 ILJ 32 ILJ C40 C33 C 0 1 N N N -23.615 29.366 6.836 11.005 -2.951 -0.336 C40 ILJ 33 ILJ C41 C34 C 0 1 N N N -21.923 33.591 24.111 -0.584 -5.714 -0.759 C41 ILJ 34 ILJ N15 N1 N 1 1 N N N -20.696 34.414 24.169 -2.020 -5.432 -0.838 N15 ILJ 35 ILJ N16 N2 N 0 1 N N N -15.008 41.728 19.352 -8.826 2.335 0.093 N16 ILJ 36 ILJ N28 N3 N 0 1 N N N -23.224 37.374 15.144 1.073 3.261 -1.224 N28 ILJ 37 ILJ O27 O1 O 0 1 N N N -21.297 36.817 16.022 -0.125 2.037 -2.637 O27 ILJ 38 ILJ O31 O2 O 0 1 N N N -24.996 35.668 14.060 3.858 3.937 -0.826 O31 ILJ 39 ILJ O34 O3 O 0 1 N N N -25.503 33.129 12.197 6.408 2.858 -0.055 O34 ILJ 40 ILJ O42 O4 O 0 1 N N N -21.150 41.795 21.148 -4.303 -0.116 2.509 O42 ILJ 41 ILJ O43 O5 O 0 1 N N N -22.324 40.288 22.197 -3.169 1.068 4.006 O43 ILJ 42 ILJ SI17 SI1 SI 0 0 N N N -17.296 37.885 22.059 -6.113 -2.134 -0.558 SI17 ILJ 43 ILJ H021 H1 H 0 0 N N N -17.451 42.081 18.252 -6.478 3.447 0.539 H021 ILJ 44 ILJ H041 H2 H 0 0 N N N -15.270 39.704 21.083 -8.431 -0.253 -0.397 H041 ILJ 45 ILJ H071 H3 H 0 0 N N N -19.512 40.798 18.742 -4.315 2.338 0.525 H071 ILJ 46 ILJ H111 H5 H 0 0 N N N -18.339 35.707 23.734 -4.620 -4.668 -0.930 H111 ILJ 47 ILJ H131 H6 H 0 0 N N N -22.465 35.563 22.558 -0.482 -3.301 -0.259 H131 ILJ 48 ILJ H141 H7 H 0 0 N N N -22.079 37.440 20.992 -1.316 -1.067 0.116 H141 ILJ 49 ILJ H183 H8 H 0 0 N N N -16.662 37.692 24.480 -6.239 -1.929 -2.998 H183 ILJ 50 ILJ H182 H9 H 0 0 N N N -15.676 38.946 23.655 -6.659 -3.574 -2.465 H182 ILJ 51 ILJ H181 H10 H 0 0 N N N -17.371 39.304 24.128 -7.841 -2.254 -2.293 H181 ILJ 52 ILJ H192 H11 H 0 0 N N N -15.940 35.781 22.231 -8.125 -2.852 0.647 H192 ILJ 53 ILJ H193 H12 H 0 0 N N N -16.257 36.203 20.515 -6.946 -4.179 0.508 H193 ILJ 54 ILJ H191 H13 H 0 0 N N N -14.999 37.090 21.440 -6.693 -2.885 1.704 H191 ILJ 55 ILJ H221 H14 H 0 0 N N N -23.852 40.821 19.222 -1.277 2.311 2.930 H221 ILJ 56 ILJ H231 H15 H 0 0 N N N -24.048 39.484 17.155 0.193 3.069 1.114 H231 ILJ 57 ILJ H251 H16 H 0 0 N N N -20.415 37.465 18.134 -2.041 0.740 -1.706 H251 ILJ 58 ILJ H291 H17 H 0 0 N N N -24.589 38.677 14.232 1.368 4.249 -3.050 H291 ILJ 59 ILJ H292 H18 H 0 0 N N N -24.778 38.483 16.008 2.443 2.861 -2.760 H292 ILJ 60 ILJ H301 H19 H 0 0 N N N -26.396 37.150 14.319 3.615 5.072 -2.536 H301 ILJ 61 ILJ H302 H20 H 0 0 N N N -25.792 36.369 15.820 2.526 5.474 -1.187 H302 ILJ 62 ILJ H322 H21 H 0 0 N N N -26.649 34.740 14.871 4.438 5.543 0.337 H322 ILJ 63 ILJ H321 H22 H 0 0 N N N -25.208 33.696 14.625 5.528 5.141 -1.011 H321 ILJ 64 ILJ H332 H23 H 0 0 N N N -26.609 34.867 12.201 6.453 4.476 1.228 H332 ILJ 65 ILJ H331 H24 H 0 0 N N N -27.348 33.467 13.049 5.072 3.373 1.434 H331 ILJ 66 ILJ H352 H25 H 0 0 N N N -26.550 31.376 12.466 6.600 1.463 1.456 H352 ILJ 67 ILJ H351 H26 H 0 0 N N N -25.214 31.677 13.628 7.982 2.566 1.251 H351 ILJ 68 ILJ H361 H27 H 0 0 N N N -24.508 29.951 11.978 7.142 0.381 -0.708 H361 ILJ 69 ILJ H362 H28 H 0 0 N N N -23.545 31.451 11.749 8.524 1.484 -0.913 H362 ILJ 70 ILJ H372 H29 H 0 0 N N N -24.960 32.062 9.797 9.533 0.609 1.176 H372 ILJ 71 ILJ H371 H30 H 0 0 N N N -25.927 30.565 10.028 8.152 -0.494 1.381 H371 ILJ 72 ILJ H381 H31 H 0 0 N N N -24.045 29.162 9.442 8.694 -1.576 -0.783 H381 ILJ 73 ILJ H382 H32 H 0 0 N N N -22.914 30.557 9.480 10.076 -0.473 -0.988 H382 ILJ 74 ILJ H391 H33 H 0 0 N N N -23.724 31.437 7.448 11.085 -1.347 1.101 H391 ILJ 75 ILJ H392 H34 H 0 0 N N N -25.278 30.542 7.564 9.703 -2.451 1.306 H392 ILJ 76 ILJ H2 H35 H 0 1 N N N -23.599 29.715 5.793 10.246 -3.533 -0.858 H2 ILJ 77 ILJ H403 H36 H 0 0 N N N -22.589 29.138 7.162 11.627 -2.430 -1.063 H403 ILJ 78 ILJ H411 H38 H 0 0 N N N -21.892 32.829 24.904 -0.055 -5.114 -1.499 H411 ILJ 79 ILJ H412 H39 H 0 0 N N N -22.803 34.235 24.256 -0.220 -5.467 0.238 H412 ILJ 80 ILJ H413 H40 H 0 0 N N N -21.987 33.097 23.130 -0.410 -6.772 -0.957 H413 ILJ 81 ILJ H161 H42 H 0 0 N N N -14.259 41.376 19.913 -8.868 3.285 0.282 H161 ILJ 82 ILJ H162 H43 H 0 0 N N N -14.776 41.627 18.385 -9.641 1.840 -0.086 H162 ILJ 83 ILJ H281 H44 H 0 0 N N N -22.929 36.847 14.347 1.219 3.565 -0.314 H281 ILJ 84 ILJ H3 H45 H 0 1 N N N -22.113 40.877 22.912 -3.771 0.741 4.688 H3 ILJ 85 ILJ CL1 CL1 CL 0 0 N Y N -24.377 28.222 6.916 12.033 -4.054 0.654 CL1 ILJ 86 ILJ H1 H46 H 0 1 N N N -20.016 34.206 24.872 -2.644 -6.146 -1.043 H1 ILJ 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ILJ C40 C39 SING N N 1 ILJ C39 C38 SING N N 2 ILJ C38 C37 SING N N 3 ILJ C37 C36 SING N N 4 ILJ C36 C35 SING N N 5 ILJ O34 C35 SING N N 6 ILJ O34 C33 SING N N 7 ILJ C33 C32 SING N N 8 ILJ O31 C32 SING N N 9 ILJ O31 C30 SING N N 10 ILJ C30 C29 SING N N 11 ILJ C29 N28 SING N N 12 ILJ N28 C26 SING N N 13 ILJ O27 C26 DOUB N N 14 ILJ C26 C24 SING N N 15 ILJ C24 C23 DOUB Y N 16 ILJ C24 C25 SING Y N 17 ILJ C23 C22 SING Y N 18 ILJ C25 C20 DOUB Y N 19 ILJ C02 C07 DOUB Y N 20 ILJ C02 C03 SING Y N 21 ILJ C22 C21 DOUB Y N 22 ILJ C07 C06 SING Y N 23 ILJ N16 C03 SING N N 24 ILJ C20 C21 SING Y N 25 ILJ C20 C08 SING N N 26 ILJ C03 C04 DOUB Y N 27 ILJ C21 C01 SING N N 28 ILJ C06 C08 SING N N 29 ILJ C06 C05 DOUB Y N 30 ILJ C08 C09 DOUB N N 31 ILJ C04 C05 SING Y N 32 ILJ C05 SI17 SING N N 33 ILJ C01 O42 DOUB N N 34 ILJ C01 O43 SING N N 35 ILJ C09 C14 SING N N 36 ILJ C09 C10 SING N N 37 ILJ C19 SI17 SING N N 38 ILJ C14 C13 DOUB N N 39 ILJ SI17 C10 SING N N 40 ILJ SI17 C18 SING N N 41 ILJ C10 C11 DOUB N N 42 ILJ C13 C12 SING N N 43 ILJ C11 C12 SING N N 44 ILJ C12 N15 DOUB N N 45 ILJ C41 N15 SING N N 46 ILJ C02 H021 SING N N 47 ILJ C04 H041 SING N N 48 ILJ C07 H071 SING N N 49 ILJ C11 H111 SING N N 50 ILJ C13 H131 SING N N 51 ILJ C14 H141 SING N N 52 ILJ C18 H183 SING N N 53 ILJ C18 H182 SING N N 54 ILJ C18 H181 SING N N 55 ILJ C19 H192 SING N N 56 ILJ C19 H193 SING N N 57 ILJ C19 H191 SING N N 58 ILJ C22 H221 SING N N 59 ILJ C23 H231 SING N N 60 ILJ C25 H251 SING N N 61 ILJ C29 H291 SING N N 62 ILJ C29 H292 SING N N 63 ILJ C30 H301 SING N N 64 ILJ C30 H302 SING N N 65 ILJ C32 H322 SING N N 66 ILJ C32 H321 SING N N 67 ILJ C33 H332 SING N N 68 ILJ C33 H331 SING N N 69 ILJ C35 H352 SING N N 70 ILJ C35 H351 SING N N 71 ILJ C36 H361 SING N N 72 ILJ C36 H362 SING N N 73 ILJ C37 H372 SING N N 74 ILJ C37 H371 SING N N 75 ILJ C38 H381 SING N N 76 ILJ C38 H382 SING N N 77 ILJ C39 H391 SING N N 78 ILJ C39 H392 SING N N 79 ILJ C40 H2 SING N N 80 ILJ C40 H403 SING N N 81 ILJ C41 H411 SING N N 82 ILJ C41 H412 SING N N 83 ILJ C41 H413 SING N N 84 ILJ N16 H161 SING N N 85 ILJ N16 H162 SING N N 86 ILJ N28 H281 SING N N 87 ILJ O43 H3 SING N N 88 ILJ C40 CL1 SING N N 89 ILJ N15 H1 SING N N 90 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ILJ InChI InChI 1.06 "InChI=1S/C34H42ClN3O5Si/c1-37-25-10-13-28-31(22-25)44(2,3)30-21-24(36)9-12-27(30)32(28)29-20-23(8-11-26(29)34(40)41)33(39)38-15-17-43-19-18-42-16-7-5-4-6-14-35/h8-13,20-22H,4-7,14-19,36H2,1-3H3,(H,38,39)(H,40,41)/p+1/b37-25+" ILJ InChIKey InChI 1.06 HVINIPVEAAMTAU-AUGOTPMTSA-O ILJ SMILES_CANONICAL CACTVS 3.385 "C[NH+]=C1C=CC2=C(c3cc(ccc3C(O)=O)C(=O)NCCOCCOCCCCCCCl)c4ccc(N)cc4[Si](C)(C)C2=C1" ILJ SMILES CACTVS 3.385 "C[NH+]=C1C=CC2=C(c3cc(ccc3C(O)=O)C(=O)NCCOCCOCCCCCCCl)c4ccc(N)cc4[Si](C)(C)C2=C1" ILJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/[NH+]=C/1\C=CC2=C(c3ccc(cc3[Si](C2=C1)(C)C)N)c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCCCl" ILJ SMILES "OpenEye OEToolkits" 2.0.7 "C[NH+]=C1C=CC2=C(c3ccc(cc3[Si](C2=C1)(C)C)N)c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCCCl" # _pdbx_chem_comp_identifier.comp_id ILJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(~{E})-[7-azanyl-10-[2-carboxy-5-[2-[2-(6-chloranylhexoxy)ethoxy]ethylcarbamoyl]phenyl]-5,5-dimethyl-benzo[b][1]benzosilin-3-ylidene]-methyl-azanium" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id ILJ _pdbx_chem_comp_synonyms.name "HaloTag with TRaQ-G-ctrl ligand" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ILJ "Create component" 2022-03-31 PDBE ILJ "Modify descriptor" 2022-08-22 RCSB ILJ "Initial release" 2023-02-01 RCSB #