data_IM2
# 
_chem_comp.id                                    IM2 
_chem_comp.name                                  
;(5R)-5-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carbox
ylic acid
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H19 N3 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "IMIPENEM, open form; N-FORMIMIDOYL-THIENAMYCINE, open form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        301.362 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IM2 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1BT5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IM2 C7   C7   C 0 1 N N N N N N 9.550  8.105  36.846 -1.670 1.773  0.978  C7   IM2 1  
IM2 C2   C2   C 0 1 N N N N N N 11.375 12.047 35.208 -0.053 -0.664 -0.853 C2   IM2 2  
IM2 C6   C6   C 0 1 N N S N N N 10.817 8.925  36.995 -2.581 1.667  -0.218 C6   IM2 3  
IM2 C5   C5   C 0 1 N N R N N N 10.461 10.388 36.570 -2.183 0.451  -1.056 C5   IM2 4  
IM2 C3   C3   C 0 1 N N N N N N 10.455 11.398 34.501 -0.987 -1.362 -0.180 C3   IM2 5  
IM2 O7   O7   O 0 1 N N N N N N 8.445  8.626  37.017 -0.992 2.760  1.135  O7   IM2 6  
IM2 C61  C61  C 0 1 N N R N N N 11.440 8.881  38.392 -4.027 1.509  0.256  C61  IM2 7  
IM2 O62  O62  O 0 1 N N N N N N 11.708 7.554  38.873 -4.142 0.325  1.049  O62  IM2 8  
IM2 C62  C62  C 0 1 N N N N N N 10.520 9.614  39.437 -4.953 1.401  -0.958 C62  IM2 9  
IM2 N4   N4   N 0 1 N N N N N N 10.074 10.188 35.164 -2.260 -0.774 -0.250 N4   IM2 10 
IM2 C31  C31  C 0 1 N N N N N N 9.799  11.797 33.240 -0.715 -2.559 0.523  C31  IM2 11 
IM2 O31  O31  O 0 1 N N N N N N 9.167  10.849 32.545 0.431  -2.960 0.621  O31  IM2 12 
IM2 O32  O32  O 0 1 N N N N N N 9.851  12.963 32.892 -1.725 -3.257 1.084  O32  IM2 13 
IM2 S21  S21  S 0 1 N N N N N N 12.055 13.608 34.738 1.650  -1.094 -0.987 S21  IM2 14 
IM2 C22  C22  C 0 1 N N N N N N 13.214 13.842 36.128 2.396  0.292  -0.093 C22  IM2 15 
IM2 C23  C23  C 0 1 N N N N N N 14.593 13.186 35.847 3.920  0.195  -0.182 C23  IM2 16 
IM2 N24  N24  N 0 1 N N N N N N 15.095 13.500 34.499 4.524  1.317  0.542  N24  IM2 17 
IM2 C25  C25  C 0 1 N N N N N N 15.742 12.504 33.894 5.887  1.441  0.600  C25  IM2 18 
IM2 N26  N26  N 0 1 N N N N N N 16.632 11.793 34.420 6.641  0.567  0.016  N26  IM2 19 
IM2 C1   C1   C 0 1 N N N N N N 11.708 11.306 36.519 -0.706 0.546  -1.481 C1   IM2 20 
IM2 H71  H71  H 0 1 N N N N N N 9.616  7.058  36.589 -1.626 0.968  1.696  H71  IM2 21 
IM2 H61A H61A H 0 0 N N N N N N 11.560 8.542  36.279 -2.494 2.570  -0.822 H61A IM2 22 
IM2 H51  H51  H 0 1 N N N N N N 9.657  10.813 37.189 -2.824 0.370  -1.934 H51  IM2 23 
IM2 H61  H61  H 0 1 N N N N N N 12.387 9.439  38.350 -4.311 2.375  0.854  H61  IM2 24 
IM2 HO6  HO6  H 0 1 N N N N N N 12.092 7.603  39.741 -5.034 0.161  1.383  HO6  IM2 25 
IM2 H621 H621 H 0 0 N N N N N N 10.987 9.570  40.432 -4.669 0.535  -1.555 H621 IM2 26 
IM2 H622 H622 H 0 0 N N N N N N 10.392 10.665 39.139 -5.983 1.288  -0.620 H622 IM2 27 
IM2 H623 H623 H 0 0 N N N N N N 9.538  9.120  39.471 -4.865 2.304  -1.562 H623 IM2 28 
IM2 H41  H41  H 0 1 N N N N N N 10.559 9.405  34.774 -3.063 -1.120 0.170  H41  IM2 29 
IM2 H321 H321 H 0 0 N N N N N N 9.381  13.071 32.073 -1.441 -4.060 1.542  H321 IM2 30 
IM2 H221 H221 H 0 0 N N N N N N 13.360 14.920 36.292 2.065  1.231  -0.537 H221 IM2 31 
IM2 H222 H222 H 0 0 N N N N N N 12.782 13.388 37.032 2.090  0.257  0.952  H222 IM2 32 
IM2 H231 H231 H 0 0 N N N N N N 15.317 13.553 36.589 4.251  -0.744 0.262  H231 IM2 33 
IM2 H232 H232 H 0 0 N N N N N N 14.492 12.095 35.942 4.227  0.230  -1.227 H232 IM2 34 
IM2 H241 H241 H 0 0 N N N N N N 14.961 14.393 34.070 3.958  1.972  0.979  H241 IM2 35 
IM2 H25  H25  H 0 1 N N N N N N 15.479 12.292 32.868 6.332  2.268  1.133  H25  IM2 36 
IM2 H26  H26  H 0 1 N N N N N N 16.984 11.104 33.787 7.606  0.654  0.058  H26  IM2 37 
IM2 H11  H11  H 0 1 N N N N N N 12.644 10.733 36.448 -0.263 1.462  -1.092 H11  IM2 38 
IM2 H12  H12  H 0 1 N N N N N N 11.760 11.987 37.381 -0.613 0.508  -2.566 H12  IM2 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IM2 C7  C6   SING N N 1  
IM2 C7  O7   DOUB N N 2  
IM2 C7  H71  SING N N 3  
IM2 C2  C3   DOUB N N 4  
IM2 C2  S21  SING N N 5  
IM2 C2  C1   SING N N 6  
IM2 C6  C5   SING N N 7  
IM2 C6  C61  SING N N 8  
IM2 C6  H61A SING N N 9  
IM2 C5  N4   SING N N 10 
IM2 C5  C1   SING N N 11 
IM2 C5  H51  SING N N 12 
IM2 C3  N4   SING N N 13 
IM2 C3  C31  SING N N 14 
IM2 C61 O62  SING N N 15 
IM2 C61 C62  SING N N 16 
IM2 C61 H61  SING N N 17 
IM2 O62 HO6  SING N N 18 
IM2 C62 H621 SING N N 19 
IM2 C62 H622 SING N N 20 
IM2 C62 H623 SING N N 21 
IM2 N4  H41  SING N N 22 
IM2 C31 O31  DOUB N N 23 
IM2 C31 O32  SING N N 24 
IM2 O32 H321 SING N N 25 
IM2 S21 C22  SING N N 26 
IM2 C22 C23  SING N N 27 
IM2 C22 H221 SING N N 28 
IM2 C22 H222 SING N N 29 
IM2 C23 N24  SING N N 30 
IM2 C23 H231 SING N N 31 
IM2 C23 H232 SING N N 32 
IM2 N24 C25  SING N N 33 
IM2 N24 H241 SING N N 34 
IM2 C25 N26  DOUB N N 35 
IM2 C25 H25  SING N N 36 
IM2 N26 H26  SING N N 37 
IM2 C1  H11  SING N N 38 
IM2 C1  H12  SING N N 39 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IM2 SMILES           ACDLabs              12.01 "O=C(O)C1=C(SCCNC=[N@H])CC(N1)C(C=O)C(O)C"                                                                                             
IM2 InChI            InChI                1.03  "InChI=1S/C12H19N3O4S/c1-7(17)8(5-16)9-4-10(11(15-9)12(18)19)20-3-2-14-6-13/h5-9,15,17H,2-4H2,1H3,(H2,13,14)(H,18,19)/t7-,8-,9-/m1/s1" 
IM2 InChIKey         InChI                1.03  UACUABDJLSUFFC-IWSPIJDZSA-N                                                                                                            
IM2 SMILES_CANONICAL CACTVS               3.370 "C[C@@H](O)[C@@H](C=O)[C@H]1CC(=C(N1)C(O)=O)SCCNC=N"                                                                                   
IM2 SMILES           CACTVS               3.370 "C[CH](O)[CH](C=O)[CH]1CC(=C(N1)C(O)=O)SCCNC=N"                                                                                        
IM2 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C/NCCSC1=C(N[C@H](C1)[C@H](C=O)[C@@H](C)O)C(=O)O"                                                                               
IM2 SMILES           "OpenEye OEToolkits" 1.7.6 "CC(C(C=O)C1CC(=C(N1)C(=O)O)SCCNC=N)O"                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
IM2 "SYSTEMATIC NAME" ACDLabs              12.01 "(5R)-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-[(2-{[(E)-iminomethyl]amino}ethyl)sulfanyl]-4,5-dihydro-1H-pyrrole-2-carboxylic acid"  
IM2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-4-(2-methanimidamidoethylsulfanyl)-2-[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2,3-dihydro-1H-pyrrole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IM2 "Create component"  1999-07-13 RCSB 
IM2 "Modify descriptor" 2011-06-04 RCSB 
IM2 "Modify name"       2011-07-12 RCSB 
IM2 "Modify synonyms"   2011-11-16 RCSB 
IM2 "Modify synonyms"   2020-06-05 PDBE 
IM2 "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 IM2 "IMIPENEM, open form"                   ? ? 
2 IM2 "N-FORMIMIDOYL-THIENAMYCINE, open form" ? ? 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 IM2 CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" C7 SG ? ? 
2 IM2 SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" C7 OG ? ? 
#