data_IMH
#
_chem_comp.id IMH
_chem_comp.name "1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H14 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Forodesine; Immucillin H"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2022-09-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 266.253
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IMH
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1B8O
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IMH "O5'" "O5'" O 0 1 N N N 21.748 90.564 76.598 4.562 2.020 1.045 "O5'" IMH 1
IMH "C5'" "C5'" C 0 1 N N N 21.538 89.154 76.412 4.195 1.245 -0.098 "C5'" IMH 2
IMH "C4'" "C4'" C 0 1 N N R 20.221 88.713 75.698 3.179 0.178 0.314 "C4'" IMH 3
IMH "N4'" "N4'" N 0 1 N N N 20.068 89.702 74.626 1.900 0.807 0.733 "N4'" IMH 4
IMH "C3'" "C3'" C 0 1 N N R 20.189 87.353 74.951 2.767 -0.685 -0.905 "C3'" IMH 5
IMH "O3'" "O3'" O 0 1 N N N 18.859 86.764 74.862 3.687 -1.761 -1.097 "O3'" IMH 6
IMH "C2'" "C2'" C 0 1 N N S 20.701 87.680 73.491 1.376 -1.221 -0.495 "C2'" IMH 7
IMH "O2'" "O2'" O 0 1 N N N 19.895 87.071 72.458 1.493 -2.535 0.054 "O2'" IMH 8
IMH "C1'" "C1'" C 0 1 N N S 20.618 89.215 73.368 0.866 -0.239 0.576 "C1'" IMH 9
IMH C9 C9 C 0 1 Y N N 22.050 89.952 73.112 -0.430 0.385 0.124 C9 IMH 10
IMH C8 C8 C 0 1 Y N N 22.284 91.271 73.243 -0.563 1.559 -0.525 C8 IMH 11
IMH N7 N7 N 0 1 Y N N 23.662 91.548 72.946 -1.881 1.796 -0.769 N7 IMH 12
IMH C5 C5 C 0 1 Y N N 24.205 90.285 72.646 -2.619 0.750 -0.267 C5 IMH 13
IMH C6 C6 C 0 1 N N N 25.600 90.006 72.264 -3.996 0.450 -0.226 C6 IMH 14
IMH O6 O6 O 0 1 N N N 26.552 90.796 72.207 -4.816 1.211 -0.711 O6 IMH 15
IMH N1 N1 N 0 1 N N N 25.742 88.625 72.015 -4.386 -0.701 0.364 N1 IMH 16
IMH C2 C2 C 0 1 N N N 24.718 87.648 72.105 -3.469 -1.546 0.904 C2 IMH 17
IMH N3 N3 N 0 1 N N N 23.491 87.997 72.459 -2.193 -1.290 0.878 N3 IMH 18
IMH C4 C4 C 0 1 Y N N 23.278 89.313 72.716 -1.720 -0.160 0.300 C4 IMH 19
IMH "HO'5" "HO'5" H 0 0 N N N 22.577 90.706 77.040 5.205 2.718 0.857 "HO'5" IMH 20
IMH "H5'1" "H5'1" H 0 0 N N N 22.380 88.770 75.818 3.754 1.895 -0.853 "H5'1" IMH 21
IMH "H5'2" "H5'2" H 0 0 N N N 21.547 88.685 77.407 5.082 0.762 -0.508 "H5'2" IMH 22
IMH "H4'" "H4'" H 0 1 N N N 19.381 88.768 76.406 3.580 -0.446 1.113 "H4'" IMH 23
IMH "HN'4" "HN'4" H 0 0 N N N 19.095 89.898 74.501 1.949 1.125 1.689 "HN'4" IMH 24
IMH "H3'" "H3'" H 0 1 N N N 20.892 86.656 75.430 2.698 -0.073 -1.804 "H3'" IMH 25
IMH "HO'3" "HO'3" H 0 0 N N N 18.909 85.938 74.396 3.474 -2.332 -1.847 "HO'3" IMH 26
IMH "H2'" "H2'" H 0 1 N N N 21.751 87.363 73.403 0.705 -1.229 -1.354 "H2'" IMH 27
IMH "HO'2" "HO'2" H 0 0 N N N 20.246 87.300 71.605 1.852 -3.188 -0.562 "HO'2" IMH 28
IMH "H1'" "H1'" H 0 1 N N N 19.949 89.473 72.534 0.720 -0.762 1.521 "H1'" IMH 29
IMH H8 H8 H 0 1 N N N 21.548 92.008 73.528 0.251 2.212 -0.807 H8 IMH 30
IMH HN7 HN7 H 0 1 N N N 24.127 92.433 72.951 -2.240 2.574 -1.223 HN7 IMH 31
IMH H2 H2 H 0 1 N N N 24.940 86.615 71.884 -3.809 -2.459 1.369 H2 IMH 32
IMH H1 H1 H 0 1 N N N 26.651 88.304 71.750 -5.328 -0.927 0.403 H1 IMH 33
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IMH "O5'" "C5'" SING N N 1
IMH "O5'" "HO'5" SING N N 2
IMH "C5'" "C4'" SING N N 3
IMH "C5'" "H5'1" SING N N 4
IMH "C5'" "H5'2" SING N N 5
IMH "C4'" "N4'" SING N N 6
IMH "C4'" "C3'" SING N N 7
IMH "C4'" "H4'" SING N N 8
IMH "N4'" "C1'" SING N N 9
IMH "N4'" "HN'4" SING N N 10
IMH "C3'" "O3'" SING N N 11
IMH "C3'" "C2'" SING N N 12
IMH "C3'" "H3'" SING N N 13
IMH "O3'" "HO'3" SING N N 14
IMH "C2'" "O2'" SING N N 15
IMH "C2'" "C1'" SING N N 16
IMH "C2'" "H2'" SING N N 17
IMH "O2'" "HO'2" SING N N 18
IMH "C1'" C9 SING N N 19
IMH "C1'" "H1'" SING N N 20
IMH C9 C8 DOUB Y N 21
IMH C9 C4 SING Y N 22
IMH C8 N7 SING Y N 23
IMH C8 H8 SING N N 24
IMH N7 C5 SING Y N 25
IMH N7 HN7 SING N N 26
IMH C5 C6 SING N N 27
IMH C5 C4 DOUB Y N 28
IMH C6 O6 DOUB N N 29
IMH C6 N1 SING N N 30
IMH N1 C2 SING N N 31
IMH C2 N3 DOUB N N 32
IMH C2 H2 SING N N 33
IMH N3 C4 SING N N 34
IMH N1 H1 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IMH SMILES ACDLabs 12.01 "OC1C(NC(CO)C1O)c1c[NH]c2c1N=CNC2=O"
IMH InChI InChI 1.06 "InChI=1S/C11H14N4O4/c16-2-5-9(17)10(18)7(15-5)4-1-12-8-6(4)13-3-14-11(8)19/h1,3,5,7,9-10,12,15-18H,2H2,(H,13,14,19)/t5-,7+,9-,10+/m1/s1"
IMH InChIKey InChI 1.06 IWKXDMQDITUYRK-KUBHLMPHSA-N
IMH SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1N[C@H]([C@H](O)[C@@H]1O)c2c[nH]c3C(=O)NC=Nc23"
IMH SMILES CACTVS 3.385 "OC[CH]1N[CH]([CH](O)[CH]1O)c2c[nH]c3C(=O)NC=Nc23"
IMH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)C(=O)NC=N2)[C@H]3[C@@H]([C@@H]([C@H](N3)CO)O)O"
IMH SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c2c([nH]1)C(=O)NC=N2)C3C(C(C(N3)CO)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IMH "SYSTEMATIC NAME" ACDLabs 12.01 "7-[(2S,3S,4R,5R)-3,4-dihydroxy-5-(hydroxymethyl)pyrrolidin-2-yl]-3,5-dihydro-4H-pyrrolo[3,2-d]pyrimidin-4-one"
IMH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-[(2~{S},3~{S},4~{R},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)pyrrolidin-2-yl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IMH "Create component" 1999-07-08 RCSB
IMH "Modify descriptor" 2011-06-04 RCSB
IMH "Modify synonyms" 2022-09-26 RCSB
IMH "Modify descriptor" 2022-09-26 RCSB
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 IMH Forodesine ? ?
2 IMH "Immucillin H" DRUGBANK ?
#