data_IMR # _chem_comp.id IMR _chem_comp.name IMINORIBITOL _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-03-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 133.146 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IMR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1I80 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IMR "O5'" O5* O 0 1 N N N 5.524 9.871 8.376 -0.068 -0.017 3.190 "O5'" IMR 1 IMR "C5'" C5* C 0 1 N N N 5.709 11.149 7.789 0.532 0.537 2.019 "C5'" IMR 2 IMR "C4'" C4* C 0 1 N N R 4.549 11.407 6.908 0.165 -0.317 0.803 "C4'" IMR 3 IMR "N4'" N4* N 0 1 N N N 3.292 11.388 7.601 -1.300 -0.308 0.606 "N4'" IMR 4 IMR "C3'" C3* C 0 1 N N R 4.636 12.749 6.227 0.800 0.277 -0.466 "C3'" IMR 5 IMR "O3'" O3* O 0 1 N N N 4.060 12.554 4.921 1.673 -0.669 -1.084 "O3'" IMR 6 IMR "C2'" C2* C 0 1 N N S 3.795 13.601 7.095 -0.396 0.594 -1.400 "C2'" IMR 7 IMR "O2'" O2* O 0 1 N N N 3.178 14.636 6.332 -0.079 0.276 -2.756 "O2'" IMR 8 IMR "C1'" C1* C 0 1 N N N 2.746 12.702 7.765 -1.511 -0.337 -0.863 "C1'" IMR 9 IMR "HO'5" 5HO* H 0 0 N N N 6.268 9.705 8.941 0.187 0.549 3.931 "HO'5" IMR 10 IMR "H5'1" 1H5* H 0 0 N N N 5.869 11.954 8.543 0.169 1.554 1.871 "H5'1" IMR 11 IMR "H5'2" 2H5* H 0 0 N N N 6.686 11.247 7.260 1.616 0.552 2.138 "H5'2" IMR 12 IMR "H4'" H4* H 0 1 N N N 4.589 10.575 6.166 0.514 -1.339 0.949 "H4'" IMR 13 IMR "HN'4" 4HN* H 0 0 N N N 3.371 10.906 8.496 -1.646 -1.185 0.966 "HN'4" IMR 14 IMR "H3'" H3* H 0 1 N N N 5.650 13.193 6.096 1.344 1.191 -0.225 "H3'" IMR 15 IMR "HO'3" 3HO* H 0 0 N N N 4.114 13.399 4.491 2.003 -0.259 -1.895 "HO'3" IMR 16 IMR "H2'" H2* H 0 1 N N N 4.417 14.097 7.875 -0.691 1.640 -1.309 "H2'" IMR 17 IMR "HO'2" 2HO* H 0 0 N N N 2.637 15.183 6.889 -0.885 0.418 -3.272 "HO'2" IMR 18 IMR "H1'1" 1H1* H 0 0 N N N 1.709 12.826 7.373 -2.495 0.053 -1.118 "H1'1" IMR 19 IMR "H1'2" 2H1* H 0 0 N N N 2.503 12.976 8.818 -1.385 -1.349 -1.250 "H1'2" IMR 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IMR "O5'" "C5'" SING N N 1 IMR "O5'" "HO'5" SING N N 2 IMR "C5'" "C4'" SING N N 3 IMR "C5'" "H5'1" SING N N 4 IMR "C5'" "H5'2" SING N N 5 IMR "C4'" "N4'" SING N N 6 IMR "C4'" "C3'" SING N N 7 IMR "C4'" "H4'" SING N N 8 IMR "N4'" "C1'" SING N N 9 IMR "N4'" "HN'4" SING N N 10 IMR "C3'" "O3'" SING N N 11 IMR "C3'" "C2'" SING N N 12 IMR "C3'" "H3'" SING N N 13 IMR "O3'" "HO'3" SING N N 14 IMR "C2'" "O2'" SING N N 15 IMR "C2'" "C1'" SING N N 16 IMR "C2'" "H2'" SING N N 17 IMR "O2'" "HO'2" SING N N 18 IMR "C1'" "H1'1" SING N N 19 IMR "C1'" "H1'2" SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IMR SMILES ACDLabs 10.04 "OCC1NCC(O)C1O" IMR SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1NC[C@H](O)[C@@H]1O" IMR SMILES CACTVS 3.341 "OC[CH]1NC[CH](O)[CH]1O" IMR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@@H]([C@H](N1)CO)O)O" IMR SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(N1)CO)O)O" IMR InChI InChI 1.03 "InChI=1S/C5H11NO3/c7-2-3-5(9)4(8)1-6-3/h3-9H,1-2H2/t3-,4+,5-/m1/s1" IMR InChIKey InChI 1.03 OQEBIHBLFRADNM-MROZADKFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IMR "SYSTEMATIC NAME" ACDLabs 10.04 "(2R,3R,4S)-2-(hydroxymethyl)pyrrolidine-3,4-diol" IMR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S)-2-(hydroxymethyl)pyrrolidine-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IMR "Create component" 2001-03-29 RCSB IMR "Modify descriptor" 2011-06-04 RCSB IMR "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IMR _pdbx_chem_comp_synonyms.name "2-HYDROXYMETHYL-PYRROLIDINE-3,4-DIOL" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##