data_IO0 # _chem_comp.id IO0 _chem_comp.name "(2S)-2-azanyl-6-[[(2R)-1-[[(2R)-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-3-sulfanylidene-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H23 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ACdV thioaldehyde" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-01 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 361.414 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IO0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PY9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IO0 O43 O1 O 0 1 N N N N N N -12.699 -6.771 -8.782 4.150 2.306 1.075 O43 IO0 1 IO0 C31 C1 C 0 1 N N N N N N -13.202 -6.076 -7.921 4.942 1.863 0.277 C31 IO0 2 IO0 O42 O2 O 0 1 N N N N N N -14.374 -6.293 -7.381 5.969 2.619 -0.140 O42 IO0 3 IO0 C30 C2 C 0 1 N N R N N N -12.517 -4.839 -7.366 4.779 0.459 -0.245 C30 IO0 4 IO0 C32 C3 C 0 1 N N N N N N -12.768 -4.694 -5.852 6.018 -0.364 0.110 C32 IO0 5 IO0 N29 N1 N 0 1 N N N N N N -11.108 -4.837 -7.729 3.595 -0.154 0.363 N29 IO0 6 IO0 C13 C4 C 0 1 N N N N N N -10.383 -3.713 -7.720 2.378 0.050 -0.178 C13 IO0 7 IO0 O18 O3 O 0 1 N N N N N N -10.761 -2.670 -7.194 2.262 0.741 -1.168 O18 IO0 8 IO0 C12 C5 C 0 1 N N R N N N -9.035 -3.795 -8.450 1.160 -0.580 0.447 C12 IO0 9 IO0 C16 C6 C 0 1 N N N N N N -8.377 -5.054 -7.981 1.313 -2.079 0.444 C16 IO0 10 IO0 S S1 S 0 1 N N N N N N -6.926 -5.102 -7.436 0.250 -2.990 -0.329 S IO0 11 IO0 N30 N2 N 0 1 N N N N N N -8.233 -2.631 -8.074 -0.031 -0.209 -0.322 N30 IO0 12 IO0 C25 C7 C 0 1 N N N N N N -7.132 -2.273 -8.738 -1.241 -0.205 0.272 C25 IO0 13 IO0 O25 O4 O 0 1 N N N N N N -6.711 -2.895 -9.711 -1.344 -0.507 1.442 O25 IO0 14 IO0 C24 C8 C 0 1 N N N N N N -6.424 -1.051 -8.214 -2.466 0.177 -0.519 C24 IO0 15 IO0 C23 C9 C 0 1 N N N N N N -7.080 0.224 -8.711 -3.700 0.101 0.384 C23 IO0 16 IO0 C22 C10 C 0 1 N N N N N N -6.297 1.477 -8.352 -4.943 0.489 -0.419 C22 IO0 17 IO0 C21 C11 C 0 1 N N S N N N -6.989 2.681 -8.989 -6.176 0.413 0.484 C21 IO0 18 IO0 N31 N3 N 0 1 N N N N N N -7.005 2.526 -10.454 -6.398 -0.980 0.895 N31 IO0 19 IO0 C20 C12 C 0 1 N N N N N N -6.245 3.949 -8.607 -7.382 0.911 -0.270 C20 IO0 20 IO0 O20 O5 O 0 1 N N N N N N -5.778 4.689 -9.441 -8.156 0.124 -0.762 O20 IO0 21 IO0 O21 O6 O 0 1 N N N N N N -6.162 4.135 -7.317 -7.597 2.230 -0.396 O21 IO0 22 IO0 H1 H1 H 0 1 N N N N N N -14.761 -7.070 -7.766 6.034 3.512 0.226 H1 IO0 23 IO0 H2 H2 H 0 1 N N N N N N -12.987 -3.969 -7.848 4.658 0.486 -1.328 H2 IO0 24 IO0 H3 H3 H 0 1 N N N N N N -12.261 -3.792 -5.480 6.139 -0.391 1.193 H3 IO0 25 IO0 H6 H6 H 0 1 N N N N N N -10.671 -5.697 -7.992 3.687 -0.707 1.154 H6 IO0 26 IO0 H7 H7 H 0 1 N N N N N N -9.198 -3.827 -9.537 1.055 -0.228 1.473 H7 IO0 27 IO0 H8 H8 H 0 1 N N N N N N -8.940 -5.975 -8.024 2.140 -2.539 0.964 H8 IO0 28 IO0 H9 H9 H 0 1 N N N N N N -8.521 -2.082 -7.289 0.051 0.033 -1.257 H9 IO0 29 IO0 H10 H10 H 0 1 N N N N N N -6.454 -1.064 -7.114 -2.354 1.194 -0.895 H10 IO0 30 IO0 H11 H11 H 0 1 N N N N N N -5.378 -1.071 -8.553 -2.586 -0.509 -1.357 H11 IO0 31 IO0 H12 H12 H 0 1 N N N N N N -8.083 0.298 -8.265 -3.812 -0.915 0.760 H12 IO0 32 IO0 H13 H13 H 0 1 N N N N N N -7.168 0.168 -9.806 -3.579 0.788 1.222 H13 IO0 33 IO0 H14 H14 H 0 1 N N N N N N -5.269 1.395 -8.735 -4.831 1.505 -0.795 H14 IO0 34 IO0 H15 H15 H 0 1 N N N N N N -6.272 1.599 -7.259 -5.063 -0.198 -1.257 H15 IO0 35 IO0 H16 H16 H 0 1 N N N N N N -8.020 2.742 -8.611 -6.019 1.032 1.367 H16 IO0 36 IO0 H17 H17 H 0 1 N N N N N N -7.496 1.689 -10.696 -7.168 -1.048 1.543 H17 IO0 37 IO0 H18 H18 H 0 1 N N N N N N -7.463 3.313 -10.867 -6.546 -1.574 0.093 H18 IO0 38 IO0 H20 H20 H 0 1 N N N N N N -5.681 4.936 -7.142 -8.384 2.502 -0.888 H20 IO0 39 IO0 C1 C13 C 0 1 N N N N N N ? ? ? 5.853 -1.790 -0.420 C1 IO0 40 IO0 C2 C14 C 0 1 N N N N N N ? ? ? 7.255 0.275 -0.525 C2 IO0 41 IO0 H4 H4 H 0 1 N N N N N N ? ? ? 6.736 -2.377 -0.167 H4 IO0 42 IO0 H5 H5 H 0 1 N N N N N N ? ? ? 4.972 -2.246 0.032 H5 IO0 43 IO0 H19 H19 H 0 1 N N N N N N ? ? ? 5.733 -1.763 -1.503 H19 IO0 44 IO0 H21 H21 H 0 1 N N N N N N ? ? ? 7.373 1.291 -0.147 H21 IO0 45 IO0 H22 H22 H 0 1 N N N N N N ? ? ? 8.138 -0.311 -0.272 H22 IO0 46 IO0 H23 H23 H 0 1 N N N N N N ? ? ? 7.135 0.302 -1.608 H23 IO0 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IO0 N31 C21 SING N N 1 IO0 O25 C25 DOUB N N 2 IO0 O20 C20 DOUB N N 3 IO0 C21 C20 SING N N 4 IO0 C21 C22 SING N N 5 IO0 O43 C31 DOUB N N 6 IO0 C25 C24 SING N N 7 IO0 C25 N30 SING N N 8 IO0 C23 C22 SING N N 9 IO0 C23 C24 SING N N 10 IO0 C20 O21 SING N N 11 IO0 C12 N30 SING N N 12 IO0 C12 C16 SING N N 13 IO0 C12 C13 SING N N 14 IO0 C16 S DOUB N N 15 IO0 C31 O42 SING N N 16 IO0 C31 C30 SING N N 17 IO0 N29 C13 SING N N 18 IO0 N29 C30 SING N N 19 IO0 C13 O18 DOUB N N 20 IO0 C30 C32 SING N N 21 IO0 O42 H1 SING N N 22 IO0 C30 H2 SING N N 23 IO0 C32 H3 SING N N 24 IO0 N29 H6 SING N N 25 IO0 C12 H7 SING N N 26 IO0 C16 H8 SING N N 27 IO0 N30 H9 SING N N 28 IO0 C24 H10 SING N N 29 IO0 C24 H11 SING N N 30 IO0 C23 H12 SING N N 31 IO0 C23 H13 SING N N 32 IO0 C22 H14 SING N N 33 IO0 C22 H15 SING N N 34 IO0 C21 H16 SING N N 35 IO0 N31 H17 SING N N 36 IO0 N31 H18 SING N N 37 IO0 O21 H20 SING N N 38 IO0 C32 C1 SING N N 39 IO0 C32 C2 SING N N 40 IO0 C1 H4 SING N N 41 IO0 C1 H5 SING N N 42 IO0 C1 H19 SING N N 43 IO0 C2 H21 SING N N 44 IO0 C2 H22 SING N N 45 IO0 C2 H23 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IO0 InChI InChI 1.06 "InChI=1S/C14H23N3O6S/c1-7(2)11(14(22)23)17-12(19)9(6-24)16-10(18)5-3-4-8(15)13(20)21/h6-9,11H,3-5,15H2,1-2H3,(H,16,18)(H,17,19)(H,20,21)(H,22,23)/t8-,9-,11+/m0/s1" IO0 InChIKey InChI 1.06 NKCVUNAEQXDNRK-ATZCPNFKSA-N IO0 SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@@H](NC(=O)[C@@H](NC(=O)CCC[C@H](N)C(O)=O)C=S)C(O)=O" IO0 SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)[CH](NC(=O)CCC[CH](N)C(O)=O)C=S)C(O)=O" IO0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@H](C(=O)O)NC(=O)[C@H](C=S)NC(=O)CCC[C@@H](C(=O)O)N" IO0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)O)NC(=O)C(C=S)NC(=O)CCCC(C(=O)O)N" # _pdbx_chem_comp_identifier.comp_id IO0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-6-[[(2~{R})-1-[[(2~{R})-3-methyl-1-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-1-oxidanylidene-3-sulfanylidene-propan-2-yl]amino]-6-oxidanylidene-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IO0 "Create component" 2023-08-01 PDBE IO0 "Initial release" 2024-08-07 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IO0 _pdbx_chem_comp_synonyms.name "ACdV thioaldehyde" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #