data_IO5
#
_chem_comp.id IO5
_chem_comp.name "(2S)-2-({3,5-dicyano-4-ethyl-6-[4-(2-hydroxyethyl)-1,4-diazepan-1-yl]pyridin-2-yl}sulfanyl)-2-phenylacetamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H28 N6 O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2021-10-04
_chem_comp.pdbx_modified_date 2022-03-25
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 464.583
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IO5
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7SFD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IO5 C01 C1 C 0 1 N N N -44.597 -7.168 31.457 -1.385 5.054 1.177 C01 IO5 1
IO5 C02 C2 C 0 1 N N N -45.399 -7.790 30.305 -1.054 4.613 -0.250 C02 IO5 2
IO5 C03 C3 C 0 1 Y N N -44.850 -9.175 29.823 -0.623 3.169 -0.243 C03 IO5 3
IO5 C04 C4 C 0 1 Y N N -45.390 -10.340 30.348 -1.556 2.141 -0.398 C04 IO5 4
IO5 C05 C5 C 0 1 N N N -46.481 -10.129 31.371 -2.946 2.444 -0.567 C05 IO5 5
IO5 C07 C6 C 0 1 Y N N -44.886 -11.585 29.894 -1.113 0.804 -0.386 C07 IO5 6
IO5 C09 C7 C 0 1 N N N -46.666 -13.123 30.962 -1.897 -0.840 -1.833 C09 IO5 7
IO5 C10 C8 C 0 1 N N N -47.402 -14.382 30.480 -3.306 -1.150 -2.380 C10 IO5 8
IO5 C11 C9 C 0 1 N N N -47.687 -14.372 28.972 -3.872 -2.354 -1.775 C11 IO5 9
IO5 C13 C10 C 0 1 N N N -45.543 -14.190 28.177 -2.753 -2.466 0.339 C13 IO5 10
IO5 C14 C11 C 0 1 N N N -44.784 -14.033 29.508 -1.961 -1.165 0.601 C14 IO5 11
IO5 C15 C12 C 0 1 N N N -47.161 -15.064 27.001 -5.052 -3.139 0.201 C15 IO5 12
IO5 C16 C13 C 0 1 N N N -46.152 -15.772 26.069 -5.329 -2.827 1.674 C16 IO5 13
IO5 C19 C14 C 0 1 Y N N -43.390 -10.485 28.474 1.085 1.462 -0.085 C19 IO5 14
IO5 C21 C15 C 0 1 N N S -41.996 -12.189 26.282 2.653 -0.780 -0.106 C21 IO5 15
IO5 C22 C16 C 0 1 Y N N -40.606 -12.358 25.579 4.036 -1.369 -0.219 C22 IO5 16
IO5 C23 C17 C 0 1 Y N N -40.468 -12.121 24.211 4.918 -1.271 0.841 C23 IO5 17
IO5 C24 C18 C 0 1 Y N N -39.224 -12.285 23.594 6.186 -1.811 0.737 C24 IO5 18
IO5 C25 C19 C 0 1 Y N N -38.117 -12.699 24.359 6.572 -2.450 -0.427 C25 IO5 19
IO5 C26 C20 C 0 1 Y N N -38.257 -12.945 25.731 5.690 -2.549 -1.486 C26 IO5 20
IO5 C27 C21 C 0 1 Y N N -39.500 -12.780 26.345 4.420 -2.013 -1.381 C27 IO5 21
IO5 C28 C22 C 0 1 N N N -42.227 -13.441 27.149 1.946 -1.383 1.081 C28 IO5 22
IO5 C31 C23 C 0 1 Y N N -43.845 -9.230 28.880 0.722 2.824 -0.086 C31 IO5 23
IO5 C32 C24 C 0 1 N N N -43.266 -7.957 28.314 1.718 3.840 0.071 C32 IO5 24
IO5 N06 N1 N 0 1 N N N -47.286 -9.954 32.126 -4.048 2.683 -0.702 N06 IO5 25
IO5 N08 N2 N 0 1 N N N -45.347 -12.972 30.341 -2.028 -0.219 -0.538 N08 IO5 26
IO5 N12 N3 N 0 1 N N N -46.698 -14.934 28.218 -4.020 -2.225 -0.307 N12 IO5 27
IO5 N18 N4 N 0 1 Y N N -43.916 -11.586 28.989 0.169 0.516 -0.230 N18 IO5 28
IO5 N29 N5 N 0 1 N N N -42.772 -14.641 26.541 2.061 -0.810 2.296 N29 IO5 29
IO5 N33 N6 N 0 1 N N N -42.846 -7.006 27.900 2.508 4.647 0.196 N33 IO5 30
IO5 O17 O1 O 0 1 N N N -46.121 -15.053 24.839 -5.893 -1.519 1.786 O17 IO5 31
IO5 O30 O2 O 0 1 N N N -41.936 -13.445 28.289 1.273 -2.382 0.942 O30 IO5 32
IO5 S20 S1 S 0 1 N N N -42.033 -10.587 27.220 2.777 1.012 0.111 S20 IO5 33
IO5 H1 H1 H 0 1 N N N -45.044 -6.202 31.736 -2.192 4.435 1.570 H1 IO5 34
IO5 H2 H2 H 0 1 N N N -44.616 -7.845 32.324 -0.502 4.942 1.806 H2 IO5 35
IO5 H3 H3 H 0 1 N N N -43.556 -7.012 31.137 -1.697 6.098 1.171 H3 IO5 36
IO5 H4 H4 H 0 1 N N N -45.378 -7.094 29.453 -1.937 4.725 -0.879 H4 IO5 37
IO5 H5 H5 H 0 1 N N N -46.437 -7.927 30.641 -0.247 5.231 -0.643 H5 IO5 38
IO5 H6 H6 H 0 1 N N N -46.537 -13.185 32.053 -1.329 -1.765 -1.740 H6 IO5 39
IO5 H7 H7 H 0 1 N N N -47.276 -12.241 30.714 -1.382 -0.162 -2.514 H7 IO5 40
IO5 H8 H8 H 0 1 N N N -48.359 -14.455 31.017 -3.962 -0.305 -2.170 H8 IO5 41
IO5 H9 H9 H 0 1 N N N -46.783 -15.261 30.714 -3.245 -1.292 -3.459 H9 IO5 42
IO5 H10 H10 H 0 1 N N N -47.816 -13.328 28.651 -4.852 -2.543 -2.214 H10 IO5 43
IO5 H11 H11 H 0 1 N N N -48.618 -14.929 28.792 -3.219 -3.199 -1.991 H11 IO5 44
IO5 H12 H12 H 0 1 N N N -44.862 -14.668 27.457 -2.154 -3.121 -0.294 H12 IO5 45
IO5 H13 H13 H 0 1 N N N -45.806 -13.183 27.820 -2.932 -2.966 1.291 H13 IO5 46
IO5 H14 H14 H 0 1 N N N -44.836 -14.983 30.060 -2.369 -0.678 1.487 H14 IO5 47
IO5 H15 H15 H 0 1 N N N -43.733 -13.793 29.291 -0.919 -1.419 0.790 H15 IO5 48
IO5 H16 H16 H 0 1 N N N -47.378 -14.065 26.595 -4.705 -4.168 0.107 H16 IO5 49
IO5 H17 H17 H 0 1 N N N -48.088 -15.655 27.035 -5.968 -3.010 -0.376 H17 IO5 50
IO5 H18 H18 H 0 1 N N N -46.472 -16.809 25.889 -6.029 -3.560 2.075 H18 IO5 51
IO5 H19 H19 H 0 1 N N N -45.153 -15.771 26.529 -4.396 -2.870 2.236 H19 IO5 52
IO5 H20 H20 H 0 1 N N N -42.784 -12.116 25.518 2.090 -0.998 -1.013 H20 IO5 53
IO5 H21 H21 H 0 1 N N N -41.323 -11.811 23.628 4.616 -0.772 1.750 H21 IO5 54
IO5 H22 H22 H 0 1 N N N -39.113 -12.095 22.537 6.875 -1.734 1.565 H22 IO5 55
IO5 H23 H23 H 0 1 N N N -37.155 -12.828 23.886 7.563 -2.871 -0.508 H23 IO5 56
IO5 H24 H24 H 0 1 N N N -37.404 -13.262 26.313 5.992 -3.047 -2.396 H24 IO5 57
IO5 H25 H25 H 0 1 N N N -39.614 -12.975 27.401 3.729 -2.093 -2.207 H25 IO5 58
IO5 H27 H27 H 0 1 N N N -42.899 -15.467 27.091 2.536 0.030 2.393 H27 IO5 59
IO5 H28 H28 H 0 1 N N N -43.021 -14.642 25.572 1.669 -1.239 3.072 H28 IO5 60
IO5 H29 H29 H 0 1 N N N -45.507 -15.468 24.245 -6.095 -1.254 2.694 H29 IO5 61
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IO5 C24 C23 DOUB Y N 1
IO5 C24 C25 SING Y N 2
IO5 C23 C22 SING Y N 3
IO5 C25 C26 DOUB Y N 4
IO5 O17 C16 SING N N 5
IO5 C22 C21 SING N N 6
IO5 C22 C27 DOUB Y N 7
IO5 C26 C27 SING Y N 8
IO5 C16 C15 SING N N 9
IO5 C21 C28 SING N N 10
IO5 C21 S20 SING N N 11
IO5 N29 C28 SING N N 12
IO5 C15 N12 SING N N 13
IO5 C28 O30 DOUB N N 14
IO5 S20 C19 SING N N 15
IO5 N33 C32 TRIP N N 16
IO5 C13 N12 SING N N 17
IO5 C13 C14 SING N N 18
IO5 N12 C11 SING N N 19
IO5 C32 C31 SING N N 20
IO5 C19 C31 DOUB Y N 21
IO5 C19 N18 SING Y N 22
IO5 C31 C03 SING Y N 23
IO5 C11 C10 SING N N 24
IO5 N18 C07 DOUB Y N 25
IO5 C14 N08 SING N N 26
IO5 C03 C02 SING N N 27
IO5 C03 C04 DOUB Y N 28
IO5 C07 N08 SING N N 29
IO5 C07 C04 SING Y N 30
IO5 C02 C01 SING N N 31
IO5 N08 C09 SING N N 32
IO5 C04 C05 SING N N 33
IO5 C10 C09 SING N N 34
IO5 C05 N06 TRIP N N 35
IO5 C01 H1 SING N N 36
IO5 C01 H2 SING N N 37
IO5 C01 H3 SING N N 38
IO5 C02 H4 SING N N 39
IO5 C02 H5 SING N N 40
IO5 C09 H6 SING N N 41
IO5 C09 H7 SING N N 42
IO5 C10 H8 SING N N 43
IO5 C10 H9 SING N N 44
IO5 C11 H10 SING N N 45
IO5 C11 H11 SING N N 46
IO5 C13 H12 SING N N 47
IO5 C13 H13 SING N N 48
IO5 C14 H14 SING N N 49
IO5 C14 H15 SING N N 50
IO5 C15 H16 SING N N 51
IO5 C15 H17 SING N N 52
IO5 C16 H18 SING N N 53
IO5 C16 H19 SING N N 54
IO5 C21 H20 SING N N 55
IO5 C23 H21 SING N N 56
IO5 C24 H22 SING N N 57
IO5 C25 H23 SING N N 58
IO5 C26 H24 SING N N 59
IO5 C27 H25 SING N N 60
IO5 N29 H27 SING N N 61
IO5 N29 H28 SING N N 62
IO5 O17 H29 SING N N 63
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IO5 SMILES ACDLabs 12.01 "NC(=O)C(Sc1nc(N2CCCN(CCO)CC2)c(C#N)c(CC)c1C#N)c1ccccc1"
IO5 InChI InChI 1.03 "InChI=1S/C24H28N6O2S/c1-2-18-19(15-25)23(30-10-6-9-29(11-12-30)13-14-31)28-24(20(18)16-26)33-21(22(27)32)17-7-4-3-5-8-17/h3-5,7-8,21,31H,2,6,9-14H2,1H3,(H2,27,32)/t21-/m0/s1"
IO5 InChIKey InChI 1.03 IHXXDZHXEBKTKE-NRFANRHFSA-N
IO5 SMILES_CANONICAL CACTVS 3.385 "CCc1c(C#N)c(S[C@H](C(N)=O)c2ccccc2)nc(N3CCCN(CCO)CC3)c1C#N"
IO5 SMILES CACTVS 3.385 "CCc1c(C#N)c(S[CH](C(N)=O)c2ccccc2)nc(N3CCCN(CCO)CC3)c1C#N"
IO5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(c1C#N)S[C@@H](c2ccccc2)C(=O)N)N3CCCN(CC3)CCO)C#N"
IO5 SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(c1C#N)SC(c2ccccc2)C(=O)N)N3CCCN(CC3)CCO)C#N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IO5 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-2-({3,5-dicyano-4-ethyl-6-[4-(2-hydroxyethyl)-1,4-diazepan-1-yl]pyridin-2-yl}sulfanyl)-2-phenylacetamide"
IO5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[3,5-dicyano-4-ethyl-6-[4-(2-hydroxyethyl)-1,4-diazepan-1-yl]pyridin-2-yl]sulfanyl-2-phenyl-ethanamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IO5 "Create component" 2021-10-04 RCSB
IO5 "Initial release" 2022-03-30 RCSB
##