data_IPD # _chem_comp.id IPD _chem_comp.name D-MYO-INOSITOL-1-PHOSPHATE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H11 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.120 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IPD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AWB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IPD C1 C1 C 0 1 N N N N N N 5.269 52.561 12.799 -0.197 -0.074 -0.062 C1 IPD 1 IPD C2 C2 C 0 1 N N R N N N 4.996 53.056 14.225 0.617 -1.345 0.188 C2 IPD 2 IPD C3 C3 C 0 1 N N R N N N 4.405 51.889 15.041 1.962 -1.240 -0.534 C3 IPD 3 IPD C4 C4 C 0 1 N N N N N N 5.413 50.728 15.130 2.732 -0.029 -0.004 C4 IPD 4 IPD C5 C5 C 0 1 N N S N N N 5.751 50.225 13.715 1.919 1.242 -0.254 C5 IPD 5 IPD C6 C6 C 0 1 N N R N N N 6.280 51.405 12.876 0.574 1.138 0.468 C6 IPD 6 IPD P1 P1 P 0 1 N N N N N N 5.242 54.263 10.752 -2.867 -0.110 -0.156 P1 IPD 7 IPD O1 O1 O 0 1 N N N N N N 5.864 53.675 12.063 -1.453 -0.171 0.612 O1 IPD 8 IPD O2 O2 O 0 1 N N N N N N 6.230 53.533 14.822 0.840 -1.499 1.591 O2 IPD 9 IPD O3 O3 O 0 1 N N N N N N 4.111 52.348 16.358 2.722 -2.428 -0.300 O3 IPD 10 IPD O4 O4 O 0 1 N N N N N N 4.869 49.645 15.912 3.988 0.069 -0.678 O4 IPD 11 IPD O5 O5 O 0 1 N N N N N N 6.780 49.213 13.826 2.638 2.373 0.241 O5 IPD 12 IPD O6 O6 O 0 1 N N N N N N 6.577 50.968 11.554 -0.186 2.325 0.234 O6 IPD 13 IPD O7 O7 O 0 1 N N N N N N 6.119 55.318 10.238 -2.942 1.203 -1.008 O7 IPD 14 IPD O8 O8 O -1 1 N N N N N N 5.035 53.142 9.799 -3.004 -1.353 -1.098 O8 IPD 15 IPD O9 O9 O -1 1 N N N N N N 3.877 54.737 11.108 -4.031 -0.118 0.893 O9 IPD 16 IPD H1 H1 H 0 1 N N N N N N 4.336 52.221 12.327 -0.367 0.044 -1.133 H1 IPD 17 IPD H2 H2 H 0 1 N N N N N N 4.258 53.870 14.185 0.068 -2.208 -0.189 H2 IPD 18 IPD H3 H3 H 0 1 N N N N N N 3.491 51.532 14.543 1.792 -1.123 -1.604 H3 IPD 19 IPD H4 H4 H 0 1 N N N N N N 6.336 51.101 15.599 2.902 -0.147 1.066 H4 IPD 20 IPD H5 H5 H 0 1 N N N N N N 4.846 49.814 13.244 1.748 1.360 -1.324 H5 IPD 21 IPD H6 H6 H 0 1 N N N N N N 7.195 51.782 13.355 0.744 1.020 1.538 H6 IPD 22 IPD HO2 HO2 H 0 1 N N N N N N 6.058 53.839 15.705 1.351 -2.286 1.824 HO2 IPD 23 IPD HO3 HO3 H 0 1 N N N N N N 3.746 51.635 16.868 3.589 -2.431 -0.728 HO3 IPD 24 IPD HO4 HO4 H 0 1 N N N N N N 5.502 48.938 15.957 4.531 0.816 -0.392 HO4 IPD 25 IPD HO5 HO5 H 0 1 N N N N N N 7.002 48.890 12.961 3.503 2.502 -0.173 HO5 IPD 26 IPD HO6 HO6 H 0 1 N N N N N N 7.202 50.253 11.589 0.243 3.134 0.545 HO6 IPD 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IPD C1 C2 SING N N 1 IPD C1 C6 SING N N 2 IPD C1 O1 SING N N 3 IPD C1 H1 SING N N 4 IPD C2 C3 SING N N 5 IPD C2 O2 SING N N 6 IPD C2 H2 SING N N 7 IPD C3 C4 SING N N 8 IPD C3 O3 SING N N 9 IPD C3 H3 SING N N 10 IPD C4 C5 SING N N 11 IPD C4 O4 SING N N 12 IPD C4 H4 SING N N 13 IPD C5 C6 SING N N 14 IPD C5 O5 SING N N 15 IPD C5 H5 SING N N 16 IPD C6 O6 SING N N 17 IPD C6 H6 SING N N 18 IPD P1 O1 SING N N 19 IPD P1 O7 DOUB N N 20 IPD P1 O8 SING N N 21 IPD P1 O9 SING N N 22 IPD O2 HO2 SING N N 23 IPD O3 HO3 SING N N 24 IPD O4 HO4 SING N N 25 IPD O5 HO5 SING N N 26 IPD O6 HO6 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IPD SMILES ACDLabs 12.01 "O=P([O-])([O-])OC1C(O)C(O)C(O)C(O)C1O" IPD InChI InChI 1.03 "InChI=1S/C6H13O9P/c7-1-2(8)4(10)6(5(11)3(1)9)15-16(12,13)14/h1-11H,(H2,12,13,14)/p-2/t1-,2-,3+,4-,5-,6-/m1/s1" IPD InChIKey InChI 1.03 INAPMGSXUVUWAF-UOTPTPDRSA-L IPD SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1[C@@H](O)[C@@H](O)[C@@H](O[P]([O-])([O-])=O)[C@H](O)[C@H]1O" IPD SMILES CACTVS 3.370 "O[CH]1[CH](O)[CH](O)[CH](O[P]([O-])([O-])=O)[CH](O)[CH]1O" IPD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[C@H]1([C@H](C([C@@H]([C@@H](C1O)O)O)OP(=O)([O-])[O-])O)O" IPD SMILES "OpenEye OEToolkits" 1.7.6 "C1(C(C(C(C(C1O)O)OP(=O)([O-])[O-])O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IPD "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl phosphate" IPD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,5S,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl] phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IPD "Create component" 1999-07-08 RCSB IPD "Modify descriptor" 2011-06-04 RCSB IPD "Other modification" 2013-03-12 RCSB IPD "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id IPD _pdbx_chem_comp_pcm.modified_residue_id HIS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom P1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #