data_IR9 # _chem_comp.id IR9 _chem_comp.name "[(2S,3R,4S,5S)-3,4-dihydroxypyrrolidine-2,5-diyl]bis(methylene) bis[dihydrogen (phosphate)]" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H15 N O10 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-04-26 _chem_comp.pdbx_modified_date 2017-12-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.132 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IR9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5VJP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IR9 O3P O1 O 0 1 N N N -22.956 -33.558 -3.132 -4.930 -0.768 -0.930 O3P IR9 1 IR9 P1 P1 P 0 1 N N N -23.121 -34.825 -2.336 -3.919 -1.321 -0.002 P1 IR9 2 IR9 O1P O2 O 0 1 N N N -21.797 -35.495 -2.076 -4.371 -1.035 1.517 O1P IR9 3 IR9 O2P O3 O 0 1 N N N -24.034 -35.778 -3.072 -3.790 -2.909 -0.233 O2P IR9 4 IR9 O1 O4 O 0 1 N N N -23.803 -34.487 -0.926 -2.496 -0.621 -0.279 O1 IR9 5 IR9 C1 C1 C 0 1 N N N -23.068 -33.836 0.098 -2.308 0.795 -0.259 C1 IR9 6 IR9 C2 C2 C 0 1 N N S -23.838 -34.020 1.399 -0.844 1.120 -0.562 C2 IR9 7 IR9 C3 C3 C 0 1 N N R -23.214 -33.351 2.609 -0.635 2.652 -0.671 C3 IR9 8 IR9 O3 O5 O 0 1 N N N -22.823 -32.013 2.292 -1.440 3.342 0.287 O3 IR9 9 IR9 N1 N1 N 0 1 N N N -25.201 -33.432 1.313 0.025 0.739 0.581 N1 IR9 10 IR9 C5 C4 C 0 1 N N S -25.500 -32.881 2.654 1.251 1.555 0.445 C5 IR9 11 IR9 C4 C5 C 0 1 N N S -24.385 -33.368 3.561 0.867 2.819 -0.345 C4 IR9 12 IR9 O4 O6 O 0 1 N N N -24.227 -32.548 4.722 1.074 3.986 0.454 O4 IR9 13 IR9 C6 C6 C 0 1 N N N -26.860 -33.324 3.137 2.319 0.767 -0.318 C6 IR9 14 IR9 O6 O7 O 0 1 N N N -27.797 -33.102 2.091 2.735 -0.352 0.466 O6 IR9 15 IR9 P2 P2 P 0 1 N N N -29.144 -32.281 2.354 3.851 -1.403 -0.029 P2 IR9 16 IR9 O4P O8 O 0 1 N N N -28.841 -30.819 2.116 5.270 -0.654 -0.163 O4P IR9 17 IR9 O5P O9 O 0 1 N N N -29.603 -32.498 3.785 3.974 -2.599 1.041 O5P IR9 18 IR9 O6P O10 O 0 1 N N N -30.173 -32.798 1.375 3.459 -1.956 -1.344 O6P IR9 19 IR9 H1 H1 H 0 1 N N N -21.100 -34.983 -2.469 -3.753 -1.370 2.181 H1 IR9 20 IR9 H2 H2 H 0 1 N N N -24.317 -35.381 -3.887 -4.612 -3.396 -0.083 H2 IR9 21 IR9 H3 H3 H 0 1 N N N -22.068 -34.285 0.186 -2.946 1.257 -1.013 H3 IR9 22 IR9 H4 H4 H 0 1 N N N -22.970 -32.765 -0.133 -2.570 1.183 0.725 H4 IR9 23 IR9 H5 H5 H 0 1 N N N -23.926 -35.097 1.602 -0.522 0.622 -1.476 H5 IR9 24 IR9 H6 H6 H 0 1 N N N -22.378 -33.948 3.001 -0.851 3.000 -1.681 H6 IR9 25 IR9 H7 H7 H 0 1 N N N -22.434 -31.606 3.058 -1.346 4.304 0.260 H7 IR9 26 IR9 H8 H8 H 0 1 N N N -25.222 -32.705 0.627 -0.435 0.921 1.461 H8 IR9 27 IR9 H10 H10 H 0 1 N N N -25.473 -31.782 2.613 1.626 1.829 1.431 H10 IR9 28 IR9 H11 H11 H 0 1 N N N -24.593 -34.407 3.856 1.449 2.882 -1.265 H11 IR9 29 IR9 H12 H12 H 0 1 N N N -25.003 -32.615 5.265 0.808 4.810 0.024 H12 IR9 30 IR9 H13 H13 H 0 1 N N N -27.148 -32.741 4.025 1.905 0.415 -1.263 H13 IR9 31 IR9 H14 H14 H 0 1 N N N -26.834 -34.394 3.393 3.175 1.412 -0.514 H14 IR9 32 IR9 H15 H15 H 0 1 N N N -29.362 -30.502 1.388 5.590 -0.266 0.664 H15 IR9 33 IR9 H16 H16 H 0 1 N N N -30.454 -32.920 3.784 4.630 -3.270 0.807 H16 IR9 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IR9 O3P P1 DOUB N N 1 IR9 O2P P1 SING N N 2 IR9 P1 O1P SING N N 3 IR9 P1 O1 SING N N 4 IR9 O1 C1 SING N N 5 IR9 C1 C2 SING N N 6 IR9 N1 C2 SING N N 7 IR9 N1 C5 SING N N 8 IR9 O6P P2 DOUB N N 9 IR9 C2 C3 SING N N 10 IR9 O6 P2 SING N N 11 IR9 O6 C6 SING N N 12 IR9 O4P P2 SING N N 13 IR9 O3 C3 SING N N 14 IR9 P2 O5P SING N N 15 IR9 C3 C4 SING N N 16 IR9 C5 C6 SING N N 17 IR9 C5 C4 SING N N 18 IR9 C4 O4 SING N N 19 IR9 O1P H1 SING N N 20 IR9 O2P H2 SING N N 21 IR9 C1 H3 SING N N 22 IR9 C1 H4 SING N N 23 IR9 C2 H5 SING N N 24 IR9 C3 H6 SING N N 25 IR9 O3 H7 SING N N 26 IR9 N1 H8 SING N N 27 IR9 C5 H10 SING N N 28 IR9 C4 H11 SING N N 29 IR9 O4 H12 SING N N 30 IR9 C6 H13 SING N N 31 IR9 C6 H14 SING N N 32 IR9 O4P H15 SING N N 33 IR9 O5P H16 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IR9 SMILES ACDLabs 12.01 "O=P(O)(OCC1C(C(C(N1)COP(O)(O)=O)O)O)O" IR9 InChI InChI 1.03 "InChI=1S/C6H15NO10P2/c8-5-3(1-16-18(10,11)12)7-4(6(5)9)2-17-19(13,14)15/h3-9H,1-2H2,(H2,10,11,12)(H2,13,14,15)/t3-,4-,5-,6+/m0/s1" IR9 InChIKey InChI 1.03 JDMJAXIARMVOFV-OMMKOOBNSA-N IR9 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@H](CO[P](O)(O)=O)N[C@H]1CO[P](O)(O)=O" IR9 SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](CO[P](O)(O)=O)N[CH]1CO[P](O)(O)=O" IR9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]1[C@H]([C@H]([C@@H](N1)COP(=O)(O)O)O)O)OP(=O)(O)O" IR9 SMILES "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(N1)COP(=O)(O)O)O)O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IR9 "SYSTEMATIC NAME" ACDLabs 12.01 "[(2S,3R,4S,5S)-3,4-dihydroxypyrrolidine-2,5-diyl]bis(methylene) bis[dihydrogen (phosphate)]" IR9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{S},3~{R},4~{S},5~{S})-3,4-bis(oxidanyl)-5-(phosphonooxymethyl)pyrrolidin-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IR9 "Create component" 2017-04-26 RCSB IR9 "Initial release" 2017-12-27 RCSB #