data_IRL
#
_chem_comp.id IRL
_chem_comp.name "(2R)-2-({(2S)-3-(biphenyl-4-yl)-2-[(3,5-dimethylbenzoyl)(methyl)amino]propanoyl}amino)-3-(1H-indol-3-yl)propanoic acid (non-preferred name)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H35 N3 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-06-23
_chem_comp.pdbx_modified_date 2013-06-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 573.681
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IRL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4L7Y
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IRL C1 C1 C 0 1 Y N N -35.149 20.388 -21.254 4.049 4.699 -0.157 C1 IRL 1
IRL C2 C2 C 0 1 Y N N -35.622 19.173 -21.151 3.236 3.741 -0.729 C2 IRL 2
IRL C3 C3 C 0 1 Y N N -36.902 18.872 -21.423 2.473 2.902 0.084 C3 IRL 3
IRL C4 C4 C 0 1 Y N N -37.799 19.868 -21.805 2.538 3.037 1.472 C4 IRL 4
IRL C5 C5 C 0 1 Y N N -37.309 21.203 -21.936 3.355 3.998 2.031 C5 IRL 5
IRL C6 C6 C 0 1 Y N N -35.941 21.464 -21.647 4.113 4.823 1.219 C6 IRL 6
IRL C7 C7 C 0 1 N N N -33.740 20.532 -20.933 4.873 5.606 -1.033 C7 IRL 7
IRL C8 C8 C 0 1 N N N -38.260 22.374 -22.366 3.426 4.145 3.529 C8 IRL 8
IRL C9 C9 C 0 1 N N N -37.287 17.500 -21.246 1.600 1.874 -0.522 C9 IRL 9
IRL N10 N10 N 0 1 N N N -36.263 16.578 -20.703 0.629 1.296 0.213 N10 IRL 10
IRL C11 C11 C 0 1 N N S -36.739 16.082 -19.454 -0.309 0.364 -0.417 C11 IRL 11
IRL C12 C12 C 0 1 N N N -36.568 14.749 -19.918 -0.288 -0.968 0.336 C12 IRL 12
IRL C13 C13 C 0 1 Y N N -36.255 13.423 -19.374 1.069 -1.607 0.188 C13 IRL 13
IRL C14 C14 C 0 1 Y N N -35.062 13.308 -18.656 2.064 -1.333 1.109 C14 IRL 14
IRL C15 C15 C 0 1 Y N N -34.675 11.937 -18.276 3.308 -1.916 0.978 C15 IRL 15
IRL C16 C16 C 0 1 Y N N -35.608 10.791 -18.600 3.561 -2.781 -0.084 C16 IRL 16
IRL C17 C17 C 0 1 Y N N -36.705 11.114 -19.380 2.555 -3.053 -1.010 C17 IRL 17
IRL C18 C18 C 0 1 Y N N -36.990 12.297 -19.760 1.313 -2.469 -0.866 C18 IRL 18
IRL C19 C19 C 0 1 Y N N -35.521 9.214 -18.114 4.897 -3.410 -0.230 C19 IRL 19
IRL C20 C20 C 0 1 Y N N -34.391 8.673 -17.521 5.150 -4.275 -1.293 C20 IRL 20
IRL C21 C21 C 0 1 Y N N -34.274 7.324 -17.108 6.394 -4.858 -1.424 C21 IRL 21
IRL C22 C22 C 0 1 Y N N -35.375 6.476 -17.247 7.389 -4.585 -0.503 C22 IRL 22
IRL C23 C23 C 0 1 Y N N -36.575 6.982 -17.777 7.143 -3.727 0.554 C23 IRL 23
IRL C24 C24 C 0 1 Y N N -36.657 8.327 -18.206 5.905 -3.134 0.691 C24 IRL 24
IRL C25 C25 C 0 1 N N N -34.969 16.402 -21.220 0.512 1.600 1.641 C25 IRL 25
IRL O26 O26 O 0 1 N N N -38.485 17.211 -21.301 1.758 1.551 -1.683 O26 IRL 26
IRL C27 C27 C 0 1 N N N -35.929 16.296 -18.184 -1.700 0.944 -0.372 C27 IRL 27
IRL O28 O28 O 0 1 N N N -35.902 15.463 -17.183 -1.966 1.819 0.424 O28 IRL 28
IRL N29 N29 N 0 1 N N N -35.607 17.691 -17.711 -2.647 0.490 -1.216 N29 IRL 29
IRL C30 C30 C 0 1 N N R -36.032 18.792 -18.535 -3.998 1.053 -1.173 C30 IRL 30
IRL C31 C31 C 0 1 N N N -37.512 18.935 -18.193 -4.050 2.301 -2.016 C31 IRL 31
IRL C32 C32 C 0 1 N N N -35.396 20.212 -18.542 -4.996 0.029 -1.717 C32 IRL 32
IRL C33 C33 C 0 1 Y N N -33.950 20.456 -18.090 -5.034 -1.169 -0.803 C33 IRL 33
IRL C34 C34 C 0 1 Y N N -33.185 19.530 -17.511 -4.333 -2.305 -0.946 C34 IRL 34
IRL N35 N35 N 0 1 Y N N -31.936 20.067 -17.224 -4.627 -3.166 0.076 N35 IRL 35
IRL C36 C36 C 0 1 Y N N -32.027 21.388 -17.684 -5.548 -2.591 0.923 C36 IRL 36
IRL C37 C37 C 0 1 Y N N -33.262 21.586 -18.208 -5.838 -1.312 0.413 C37 IRL 37
IRL C38 C38 C 0 1 Y N N -31.063 22.438 -17.666 -6.175 -3.019 2.089 C38 IRL 38
IRL C39 C39 C 0 1 Y N N -31.384 23.710 -18.197 -7.074 -2.191 2.725 C39 IRL 39
IRL C40 C40 C 0 1 Y N N -32.658 23.909 -18.742 -7.362 -0.933 2.214 C40 IRL 40
IRL C41 C41 C 0 1 Y N N -33.566 22.843 -18.728 -6.747 -0.487 1.078 C41 IRL 41
IRL O42 O42 O 0 1 N N N -38.129 19.929 -18.315 -3.059 2.681 -2.595 O42 IRL 42
IRL O43 O43 O 0 1 N N N -38.114 17.979 -17.871 -5.196 2.991 -2.125 O43 IRL 43
IRL H1 H1 H 0 1 N N N -34.958 18.382 -20.835 3.190 3.642 -1.803 H1 IRL 44
IRL H2 H2 H 0 1 N N N -38.836 19.637 -21.997 1.950 2.390 2.106 H2 IRL 45
IRL H3 H3 H 0 1 N N N -35.532 22.460 -21.729 4.751 5.574 1.662 H3 IRL 46
IRL H4 H4 H 0 1 N N N -33.628 20.749 -19.860 4.298 6.500 -1.274 H4 IRL 47
IRL H5 H5 H 0 1 N N N -33.212 19.598 -21.175 5.784 5.891 -0.506 H5 IRL 48
IRL H6 H6 H 0 1 N N N -33.313 21.358 -21.520 5.135 5.083 -1.953 H6 IRL 49
IRL H7 H7 H 0 1 N N N -38.717 22.823 -21.472 4.217 3.505 3.920 H7 IRL 50
IRL H8 H8 H 0 1 N N N -37.680 23.138 -22.904 3.639 5.183 3.783 H8 IRL 51
IRL H9 H9 H 0 1 N N N -39.049 21.982 -23.024 2.472 3.852 3.969 H9 IRL 52
IRL H10 H10 H 0 1 N N N -37.797 16.331 -19.286 -0.018 0.200 -1.454 H10 IRL 53
IRL H11 H11 H 0 1 N N N -37.528 14.563 -20.422 -0.493 -0.791 1.392 H11 IRL 54
IRL H12 H12 H 0 1 N N N -35.776 14.874 -20.671 -1.049 -1.630 -0.076 H12 IRL 55
IRL H13 H13 H 0 1 N N N -34.462 14.168 -18.396 1.867 -0.663 1.932 H13 IRL 56
IRL H14 H14 H 0 1 N N N -33.737 11.753 -17.773 4.084 -1.702 1.698 H14 IRL 57
IRL H15 H15 H 0 1 N N N -37.361 10.313 -19.686 2.746 -3.722 -1.835 H15 IRL 58
IRL H16 H16 H 0 1 N N N -37.840 12.437 -20.411 0.533 -2.678 -1.582 H16 IRL 59
IRL H17 H17 H 0 1 N N N -33.544 9.324 -17.364 4.374 -4.490 -2.013 H17 IRL 60
IRL H18 H18 H 0 1 N N N -33.348 6.956 -16.692 6.591 -5.529 -2.247 H18 IRL 61
IRL H19 H19 H 0 1 N N N -35.305 5.440 -16.950 8.361 -5.043 -0.609 H19 IRL 62
IRL H20 H20 H 0 1 N N N -37.439 6.340 -17.857 7.924 -3.518 1.271 H20 IRL 63
IRL H21 H21 H 0 1 N N N -37.587 8.698 -18.610 5.715 -2.461 1.514 H21 IRL 64
IRL H22 H22 H 0 1 N N N -34.431 15.656 -20.617 0.470 2.681 1.780 H22 IRL 65
IRL H23 H23 H 0 1 N N N -35.035 16.053 -22.261 -0.397 1.148 2.036 H23 IRL 66
IRL H24 H24 H 0 1 N N N -34.428 17.359 -21.187 1.377 1.199 2.170 H24 IRL 67
IRL H25 H25 H 0 1 N N N -35.115 17.846 -16.854 -2.434 -0.211 -1.853 H25 IRL 68
IRL H26 H26 H 0 1 N N N -35.995 18.445 -19.578 -4.256 1.300 -0.143 H26 IRL 69
IRL H27 H27 H 0 1 N N N -35.460 20.573 -19.579 -5.988 0.479 -1.767 H27 IRL 70
IRL H28 H28 H 0 1 N N N -36.030 20.837 -17.896 -4.688 -0.285 -2.714 H28 IRL 71
IRL H29 H29 H 0 1 N N N -33.490 18.516 -17.297 -3.640 -2.509 -1.749 H29 IRL 72
IRL H30 H30 H 0 1 N N N -31.155 19.617 -16.791 -4.244 -4.051 0.187 H30 IRL 73
IRL H31 H31 H 0 1 N N N -30.084 22.262 -17.246 -5.958 -3.996 2.493 H31 IRL 74
IRL H32 H32 H 0 1 N N N -30.660 24.511 -18.182 -7.560 -2.525 3.630 H32 IRL 75
IRL H33 H33 H 0 1 N N N -32.935 24.864 -19.164 -8.065 -0.294 2.728 H33 IRL 76
IRL H34 H34 H 0 1 N N N -34.551 23.003 -19.141 -6.976 0.493 0.687 H34 IRL 77
IRL H35 H35 H 0 1 N N N -39.031 18.203 -17.765 -5.180 3.785 -2.677 H35 IRL 78
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IRL C8 C5 SING N N 1
IRL C5 C4 DOUB Y N 2
IRL C5 C6 SING Y N 3
IRL C4 C3 SING Y N 4
IRL C6 C1 DOUB Y N 5
IRL C3 C9 SING N N 6
IRL C3 C2 DOUB Y N 7
IRL O26 C9 DOUB N N 8
IRL C1 C2 SING Y N 9
IRL C1 C7 SING N N 10
IRL C9 N10 SING N N 11
IRL C25 N10 SING N N 12
IRL N10 C11 SING N N 13
IRL C12 C11 SING N N 14
IRL C12 C13 SING N N 15
IRL C18 C17 DOUB Y N 16
IRL C18 C13 SING Y N 17
IRL C11 C27 SING N N 18
IRL C17 C16 SING Y N 19
IRL C13 C14 DOUB Y N 20
IRL C40 C41 DOUB Y N 21
IRL C40 C39 SING Y N 22
IRL C41 C37 SING Y N 23
IRL C14 C15 SING Y N 24
IRL C16 C15 DOUB Y N 25
IRL C16 C19 SING N N 26
IRL C32 C30 SING N N 27
IRL C32 C33 SING N N 28
IRL C30 C31 SING N N 29
IRL C30 N29 SING N N 30
IRL O42 C31 DOUB N N 31
IRL C37 C33 SING Y N 32
IRL C37 C36 DOUB Y N 33
IRL C24 C19 DOUB Y N 34
IRL C24 C23 SING Y N 35
IRL C39 C38 DOUB Y N 36
IRL C31 O43 SING N N 37
IRL C27 N29 SING N N 38
IRL C27 O28 DOUB N N 39
IRL C19 C20 SING Y N 40
IRL C33 C34 DOUB Y N 41
IRL C23 C22 DOUB Y N 42
IRL C36 C38 SING Y N 43
IRL C36 N35 SING Y N 44
IRL C20 C21 DOUB Y N 45
IRL C34 N35 SING Y N 46
IRL C22 C21 SING Y N 47
IRL C2 H1 SING N N 48
IRL C4 H2 SING N N 49
IRL C6 H3 SING N N 50
IRL C7 H4 SING N N 51
IRL C7 H5 SING N N 52
IRL C7 H6 SING N N 53
IRL C8 H7 SING N N 54
IRL C8 H8 SING N N 55
IRL C8 H9 SING N N 56
IRL C11 H10 SING N N 57
IRL C12 H11 SING N N 58
IRL C12 H12 SING N N 59
IRL C14 H13 SING N N 60
IRL C15 H14 SING N N 61
IRL C17 H15 SING N N 62
IRL C18 H16 SING N N 63
IRL C20 H17 SING N N 64
IRL C21 H18 SING N N 65
IRL C22 H19 SING N N 66
IRL C23 H20 SING N N 67
IRL C24 H21 SING N N 68
IRL C25 H22 SING N N 69
IRL C25 H23 SING N N 70
IRL C25 H24 SING N N 71
IRL N29 H25 SING N N 72
IRL C30 H26 SING N N 73
IRL C32 H27 SING N N 74
IRL C32 H28 SING N N 75
IRL C34 H29 SING N N 76
IRL N35 H30 SING N N 77
IRL C38 H31 SING N N 78
IRL C39 H32 SING N N 79
IRL C40 H33 SING N N 80
IRL C41 H34 SING N N 81
IRL O43 H35 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IRL SMILES ACDLabs 12.01 "O=C(c1cc(cc(c1)C)C)N(C)C(C(=O)NC(C(=O)O)Cc3c2ccccc2nc3)Cc5ccc(c4ccccc4)cc5"
IRL InChI InChI 1.03
"InChI=1S/C36H35N3O4/c1-23-17-24(2)19-28(18-23)35(41)39(3)33(20-25-13-15-27(16-14-25)26-9-5-4-6-10-26)34(40)38-32(36(42)43)21-29-22-37-31-12-8-7-11-30(29)31/h4-19,22,32-33,37H,20-21H2,1-3H3,(H,38,40)(H,42,43)/t32-,33+/m1/s1"
IRL InChIKey InChI 1.03 UZDORQWMYRRLQV-SAIUNTKASA-N
IRL SMILES_CANONICAL CACTVS 3.385 "CN([C@@H](Cc1ccc(cc1)c2ccccc2)C(=O)N[C@H](Cc3c[nH]c4ccccc34)C(O)=O)C(=O)c5cc(C)cc(C)c5"
IRL SMILES CACTVS 3.385 "CN([CH](Cc1ccc(cc1)c2ccccc2)C(=O)N[CH](Cc3c[nH]c4ccccc34)C(O)=O)C(=O)c5cc(C)cc(C)c5"
IRL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1cc(cc(c1)C(=O)N(C)[C@@H](Cc2ccc(cc2)c3ccccc3)C(=O)N[C@H](Cc4c[nH]c5c4cccc5)C(=O)O)C"
IRL SMILES "OpenEye OEToolkits" 1.7.6 "Cc1cc(cc(c1)C(=O)N(C)C(Cc2ccc(cc2)c3ccccc3)C(=O)NC(Cc4c[nH]c5c4cccc5)C(=O)O)C"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IRL "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-({(2S)-3-(biphenyl-4-yl)-2-[(3,5-dimethylbenzoyl)(methyl)amino]propanoyl}amino)-3-(1H-indol-3-yl)propanoic acid (non-preferred name)"
IRL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-[[(2S)-2-[(3,5-dimethylphenyl)carbonyl-methyl-amino]-3-(4-phenylphenyl)propanoyl]amino]-3-(1H-indol-3-yl)propanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IRL "Create component" 2013-06-23 PDBJ
IRL "Initial release" 2013-07-03 RCSB
#