data_IRM
#
_chem_comp.id IRM
_chem_comp.name 1,2-Dihydro-psi,psi-caroten-1-ol
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C40 H58 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Rhodopin; (6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-04-07
_chem_comp.pdbx_modified_date 2022-10-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 554.888
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IRM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ZCU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IRM C1 C1 C 0 1 N N N 67.003 71.324 66.147 -15.758 0.214 -2.037 C1 IRM 1
IRM C10 C2 C 0 1 N N N 67.516 72.849 76.691 -6.052 0.348 0.724 C10 IRM 2
IRM C11 C3 C 0 1 N N N 67.305 72.738 78.096 -4.804 -0.268 0.889 C11 IRM 3
IRM C12 C4 C 0 1 N N N 66.873 73.761 78.838 -3.648 0.441 0.643 C12 IRM 4
IRM C13 C5 C 0 1 N N N 66.667 73.792 80.275 -2.402 -0.174 0.808 C13 IRM 5
IRM C14 C6 C 0 1 N N N 66.224 74.938 80.840 -1.245 0.535 0.563 C14 IRM 6
IRM C15 C7 C 0 1 N N N 66.065 75.234 82.222 0.000 -0.080 0.728 C15 IRM 7
IRM C16 C8 C 0 1 N N N 65.669 76.450 82.636 1.157 0.629 0.482 C16 IRM 8
IRM C17 C9 C 0 1 N N N 65.607 76.892 83.984 2.403 0.015 0.647 C17 IRM 9
IRM C18 C10 C 0 1 N N N 65.335 78.145 84.415 3.559 0.724 0.401 C18 IRM 10
IRM C19 C11 C 0 1 N N N 65.599 78.504 85.795 4.805 0.109 0.566 C19 IRM 11
IRM C2 C12 C 0 1 N N N 68.101 71.249 67.204 -15.217 0.524 -0.640 C2 IRM 12
IRM C20 C13 C 0 1 N N N 65.632 79.744 86.287 5.961 0.817 0.320 C20 IRM 13
IRM C21 C14 C 0 1 N N N 65.940 80.080 87.633 7.209 0.201 0.485 C21 IRM 14
IRM C22 C15 C 0 1 N N N 66.121 81.318 88.149 8.354 0.904 0.242 C22 IRM 15
IRM C23 C16 C 0 1 N N N 66.382 81.464 89.569 9.606 0.286 0.408 C23 IRM 16
IRM C24 C17 C 0 1 N N N 66.631 82.600 90.223 10.746 0.985 0.165 C24 IRM 17
IRM C25 C18 C 0 1 N N N 66.852 82.656 91.624 12.008 0.362 0.332 C25 IRM 18
IRM C26 C19 C 0 1 N N N 67.135 83.771 92.308 13.129 1.050 0.094 C26 IRM 19
IRM C27 C20 C 0 1 N N N 67.245 83.759 93.810 14.472 0.387 0.272 C27 IRM 20
IRM C28 C21 C 0 1 N N N 68.689 83.958 94.286 14.953 -0.158 -1.074 C28 IRM 21
IRM C29 C22 C 0 1 N N N 68.789 83.833 95.775 16.295 -0.820 -0.897 C29 IRM 22
IRM C3 C23 C 0 1 N N N 67.637 71.234 68.656 -13.855 -0.148 -0.460 C3 IRM 23
IRM C30 C24 C 0 1 N N N 65.831 70.424 66.506 -17.059 0.986 -2.263 C30 IRM 24
IRM C31 C25 C 0 1 N N N 66.538 72.758 65.938 -14.727 0.633 -3.088 C31 IRM 25
IRM C33 C26 C 0 1 N N N 68.486 69.444 71.124 -11.894 -1.938 1.561 C33 IRM 26
IRM C34 C27 C 0 1 N N N 68.205 70.473 76.267 -7.119 -1.791 1.414 C34 IRM 27
IRM C35 C28 C 0 1 N N N 66.985 72.554 81.065 -2.324 -1.612 1.255 C35 IRM 28
IRM C36 C29 C 0 1 N N N 64.864 79.229 83.490 3.481 2.161 -0.046 C36 IRM 29
IRM C37 C30 C 0 1 N N N 66.103 82.563 87.307 8.276 2.341 -0.204 C37 IRM 30
IRM C38 C31 C 0 1 N N N 67.415 85.092 91.650 13.052 2.487 -0.352 C38 IRM 31
IRM C39 C32 C 0 1 N N N 69.886 83.669 96.494 16.450 -2.081 -1.214 C39 IRM 32
IRM C4 C33 C 0 1 N N N 68.788 71.472 69.620 -13.314 0.162 0.938 C4 IRM 33
IRM C40 C34 C 0 1 N N N 69.872 83.572 97.989 15.259 -2.905 -1.630 C40 IRM 34
IRM C41 C35 C 0 1 N N N 71.242 83.535 95.871 17.820 -2.708 -1.162 C41 IRM 35
IRM C5 C36 C 0 1 N N N 68.540 70.940 71.009 -11.972 -0.500 1.115 C5 IRM 36
IRM C6 C37 C 0 1 N N N 68.366 71.759 72.054 -10.851 0.187 0.877 C6 IRM 37
IRM C7 C38 C 0 1 N N N 68.219 71.341 73.409 -9.589 -0.436 1.044 C7 IRM 38
IRM C8 C39 C 0 1 N N N 68.004 72.192 74.416 -8.448 0.263 0.802 C8 IRM 39
IRM C9 C40 C 0 1 N N N 67.894 71.876 75.829 -7.197 -0.354 0.967 C9 IRM 40
IRM O32 O1 O 0 1 N N N 67.551 70.853 64.902 -16.010 -1.188 -2.150 O32 IRM 41
IRM H1 H1 H 0 1 N N N 67.355 73.827 76.262 -6.107 1.378 0.404 H1 IRM 42
IRM H2 H2 H 0 1 N N N 67.502 71.792 78.578 -4.748 -1.298 1.209 H2 IRM 43
IRM H3 H3 H 0 1 N N N 66.650 74.674 78.306 -3.704 1.471 0.324 H3 IRM 44
IRM H4 H4 H 0 1 N N N 65.957 75.729 80.155 -1.301 1.565 0.243 H4 IRM 45
IRM H5 H5 H 0 1 N N N 66.267 74.466 82.954 0.056 -1.110 1.047 H5 IRM 46
IRM H6 H6 H 0 1 N N N 65.371 77.155 81.874 1.101 1.659 0.162 H6 IRM 47
IRM H7 H7 H 0 1 N N N 65.797 76.150 84.745 2.458 -1.015 0.966 H7 IRM 48
IRM H8 H8 H 0 1 N N N 65.786 77.696 86.486 4.861 -0.921 0.886 H8 IRM 49
IRM H9 H9 H 0 1 N N N 68.676 70.328 67.026 -15.109 1.602 -0.524 H9 IRM 50
IRM H10 H10 H 0 1 N N N 68.756 72.122 67.070 -15.912 0.146 0.110 H10 IRM 51
IRM H11 H11 H 0 1 N N N 65.407 80.555 85.610 5.905 1.847 0.000 H11 IRM 52
IRM H12 H12 H 0 1 N N N 66.041 79.254 88.322 7.265 -0.829 0.805 H12 IRM 53
IRM H13 H13 H 0 1 N N N 66.374 80.559 90.158 9.661 -0.744 0.727 H13 IRM 54
IRM H14 H14 H 0 1 N N N 66.666 83.521 89.660 10.690 2.015 -0.155 H14 IRM 55
IRM H15 H15 H 0 1 N N N 66.787 81.731 92.178 12.064 -0.668 0.652 H15 IRM 56
IRM H16 H16 H 0 1 N N N 66.623 84.569 94.217 15.190 1.117 0.646 H16 IRM 57
IRM H17 H17 H 0 1 N N N 66.879 82.792 94.184 14.381 -0.432 0.984 H17 IRM 58
IRM H18 H18 H 0 1 N N N 69.330 83.196 93.818 14.235 -0.887 -1.449 H18 IRM 59
IRM H19 H19 H 0 1 N N N 69.031 84.959 93.986 15.044 0.662 -1.787 H19 IRM 60
IRM H20 H20 H 0 1 N N N 67.860 83.882 96.323 17.129 -0.254 -0.508 H20 IRM 61
IRM H21 H21 H 0 1 N N N 66.885 72.024 68.797 -13.964 -1.226 -0.576 H21 IRM 62
IRM H22 H22 H 0 1 N N N 67.186 70.255 68.875 -13.161 0.230 -1.210 H22 IRM 63
IRM H23 H23 H 0 1 N N N 65.389 70.759 67.456 -16.867 2.056 -2.177 H23 IRM 64
IRM H24 H24 H 0 1 N N N 65.073 70.475 65.711 -17.445 0.766 -3.259 H24 IRM 65
IRM H25 H25 H 0 1 N N N 66.184 69.387 66.611 -17.794 0.688 -1.515 H25 IRM 66
IRM H26 H26 H 0 1 N N N 66.113 73.146 66.875 -14.535 1.702 -3.001 H26 IRM 67
IRM H27 H27 H 0 1 N N N 67.394 73.381 65.638 -13.800 0.083 -2.926 H27 IRM 68
IRM H28 H28 H 0 1 N N N 65.771 72.784 65.150 -15.113 0.412 -4.083 H28 IRM 69
IRM H29 H29 H 0 1 N N N 68.302 69.163 72.171 -11.897 -2.590 0.688 H29 IRM 70
IRM H30 H30 H 0 1 N N N 67.673 69.057 70.492 -10.976 -2.093 2.128 H30 IRM 71
IRM H31 H31 H 0 1 N N N 69.444 69.016 70.793 -12.754 -2.170 2.191 H31 IRM 72
IRM H32 H32 H 0 1 N N N 68.077 70.392 77.357 -7.121 -2.444 0.540 H32 IRM 73
IRM H33 H33 H 0 1 N N N 67.522 69.772 75.765 -6.201 -1.947 1.981 H33 IRM 74
IRM H34 H34 H 0 1 N N N 69.244 70.228 76.000 -7.978 -2.024 2.043 H34 IRM 75
IRM H35 H35 H 0 1 N N N 66.778 72.735 82.130 -2.326 -2.264 0.382 H35 IRM 76
IRM H36 H36 H 0 1 N N N 66.362 71.721 80.707 -1.406 -1.767 1.822 H36 IRM 77
IRM H37 H37 H 0 1 N N N 68.047 72.300 80.936 -3.183 -1.844 1.884 H37 IRM 78
IRM H38 H38 H 0 1 N N N 64.708 80.157 84.060 3.483 2.813 0.828 H38 IRM 79
IRM H39 H39 H 0 1 N N N 65.621 79.401 82.711 4.340 2.393 -0.675 H39 IRM 80
IRM H40 H40 H 0 1 N N N 63.917 78.924 83.020 2.563 2.316 -0.613 H40 IRM 81
IRM H41 H41 H 0 1 N N N 66.272 83.442 87.947 8.278 2.993 0.669 H41 IRM 82
IRM H42 H42 H 0 1 N N N 66.898 82.504 86.549 9.135 2.573 -0.834 H42 IRM 83
IRM H43 H43 H 0 1 N N N 65.127 82.654 86.809 7.358 2.496 -0.771 H43 IRM 84
IRM H44 H44 H 0 1 N N N 67.619 85.850 92.421 13.054 3.139 0.521 H44 IRM 85
IRM H45 H45 H 0 1 N N N 68.290 84.995 90.991 13.911 2.719 -0.981 H45 IRM 86
IRM H46 H46 H 0 1 N N N 66.541 85.398 91.057 12.134 2.642 -0.919 H46 IRM 87
IRM H47 H47 H 0 1 N N N 69.686 70.981 69.216 -13.206 1.240 1.054 H47 IRM 88
IRM H48 H48 H 0 1 N N N 68.963 72.556 69.690 -14.008 -0.217 1.688 H48 IRM 89
IRM H49 H49 H 0 1 N N N 70.900 83.438 98.358 15.075 -2.765 -2.695 H49 IRM 90
IRM H50 H50 H 0 1 N N N 69.448 84.494 98.412 15.459 -3.958 -1.432 H50 IRM 91
IRM H51 H51 H 0 1 N N N 69.258 82.712 98.295 14.383 -2.589 -1.065 H51 IRM 92
IRM H52 H52 H 0 1 N N N 71.998 83.409 96.660 18.549 -1.964 -0.842 H52 IRM 93
IRM H53 H53 H 0 1 N N N 71.255 82.658 95.207 17.813 -3.538 -0.455 H53 IRM 94
IRM H54 H54 H 0 1 N N N 71.469 84.440 95.288 18.088 -3.077 -2.152 H54 IRM 95
IRM H55 H55 H 0 1 N N N 68.335 72.820 71.855 -10.907 1.217 0.557 H55 IRM 96
IRM H56 H56 H 0 1 N N N 68.285 70.286 73.632 -9.533 -1.466 1.364 H56 IRM 97
IRM H57 H57 H 0 1 N N N 67.900 73.233 74.149 -8.504 1.293 0.482 H57 IRM 98
IRM H58 H58 H 0 1 N N N 67.850 69.957 65.006 -16.356 -1.457 -3.012 H58 IRM 99
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IRM O32 C1 SING N N 1
IRM C31 C1 SING N N 2
IRM C1 C30 SING N N 3
IRM C1 C2 SING N N 4
IRM C2 C3 SING N N 5
IRM C3 C4 SING N N 6
IRM C4 C5 SING N N 7
IRM C5 C33 SING N N 8
IRM C5 C6 DOUB N E 9
IRM C6 C7 SING N N 10
IRM C7 C8 DOUB N E 11
IRM C8 C9 SING N N 12
IRM C9 C34 SING N N 13
IRM C9 C10 DOUB N E 14
IRM C10 C11 SING N N 15
IRM C11 C12 DOUB N E 16
IRM C12 C13 SING N N 17
IRM C13 C14 DOUB N E 18
IRM C13 C35 SING N N 19
IRM C14 C15 SING N N 20
IRM C15 C16 DOUB N E 21
IRM C16 C17 SING N N 22
IRM C36 C18 SING N N 23
IRM C17 C18 DOUB N E 24
IRM C18 C19 SING N N 25
IRM C19 C20 DOUB N E 26
IRM C20 C21 SING N N 27
IRM C37 C22 SING N N 28
IRM C21 C22 DOUB N E 29
IRM C22 C23 SING N N 30
IRM C23 C24 DOUB N E 31
IRM C24 C25 SING N N 32
IRM C25 C26 DOUB N E 33
IRM C38 C26 SING N N 34
IRM C26 C27 SING N N 35
IRM C27 C28 SING N N 36
IRM C28 C29 SING N N 37
IRM C29 C39 DOUB N N 38
IRM C41 C39 SING N N 39
IRM C39 C40 SING N N 40
IRM C10 H1 SING N N 41
IRM C11 H2 SING N N 42
IRM C12 H3 SING N N 43
IRM C14 H4 SING N N 44
IRM C15 H5 SING N N 45
IRM C16 H6 SING N N 46
IRM C17 H7 SING N N 47
IRM C19 H8 SING N N 48
IRM C2 H9 SING N N 49
IRM C2 H10 SING N N 50
IRM C20 H11 SING N N 51
IRM C21 H12 SING N N 52
IRM C23 H13 SING N N 53
IRM C24 H14 SING N N 54
IRM C25 H15 SING N N 55
IRM C27 H16 SING N N 56
IRM C27 H17 SING N N 57
IRM C28 H18 SING N N 58
IRM C28 H19 SING N N 59
IRM C29 H20 SING N N 60
IRM C3 H21 SING N N 61
IRM C3 H22 SING N N 62
IRM C30 H23 SING N N 63
IRM C30 H24 SING N N 64
IRM C30 H25 SING N N 65
IRM C31 H26 SING N N 66
IRM C31 H27 SING N N 67
IRM C31 H28 SING N N 68
IRM C33 H29 SING N N 69
IRM C33 H30 SING N N 70
IRM C33 H31 SING N N 71
IRM C34 H32 SING N N 72
IRM C34 H33 SING N N 73
IRM C34 H34 SING N N 74
IRM C35 H35 SING N N 75
IRM C35 H36 SING N N 76
IRM C35 H37 SING N N 77
IRM C36 H38 SING N N 78
IRM C36 H39 SING N N 79
IRM C36 H40 SING N N 80
IRM C37 H41 SING N N 81
IRM C37 H42 SING N N 82
IRM C37 H43 SING N N 83
IRM C38 H44 SING N N 84
IRM C38 H45 SING N N 85
IRM C38 H46 SING N N 86
IRM C4 H47 SING N N 87
IRM C4 H48 SING N N 88
IRM C40 H49 SING N N 89
IRM C40 H50 SING N N 90
IRM C40 H51 SING N N 91
IRM C41 H52 SING N N 92
IRM C41 H53 SING N N 93
IRM C41 H54 SING N N 94
IRM C6 H55 SING N N 95
IRM C7 H56 SING N N 96
IRM C8 H57 SING N N 97
IRM O32 H58 SING N N 98
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IRM InChI InChI 1.06 "InChI=1S/C40H58O/c1-33(2)19-13-22-36(5)25-16-28-37(6)26-14-23-34(3)20-11-12-21-35(4)24-15-27-38(7)29-17-30-39(8)31-18-32-40(9,10)41/h11-12,14-17,19-21,23-30,41H,13,18,22,31-32H2,1-10H3/b12-11+,23-14+,24-15+,28-16+,29-17+,34-20+,35-21+,36-25+,37-26+,38-27+,39-30+"
IRM InChIKey InChI 1.06 CNYVJTJLUKKCGM-RGGGOQHISA-N
IRM SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCC/C(C)=C/C=C/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C=C(\C)CCCC(C)(C)O"
IRM SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCCC(C)(C)O"
IRM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCCC(C)(C)O)/C)/C)/C)C"
IRM SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCCC(C)(C)O)C)C)C)C"
#
_pdbx_chem_comp_identifier.comp_id IRM
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IRM "Create component" 2022-04-07 PDBE
IRM "Modify descriptor" 2022-08-22 RCSB
IRM "Initial release" 2022-10-05 RCSB
IRM "Modify synonyms" 2022-10-05 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 IRM Rhodopin ? ?
2 IRM "(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol" ? ?
#