data_IRM # _chem_comp.id IRM _chem_comp.name 1,2-Dihydro-psi,psi-caroten-1-ol _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H58 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Rhodopin; (6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-07 _chem_comp.pdbx_modified_date 2022-10-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 554.888 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IRM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZCU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IRM C1 C1 C 0 1 N N N 67.003 71.324 66.147 -15.758 0.214 -2.037 C1 IRM 1 IRM C10 C2 C 0 1 N N N 67.516 72.849 76.691 -6.052 0.348 0.724 C10 IRM 2 IRM C11 C3 C 0 1 N N N 67.305 72.738 78.096 -4.804 -0.268 0.889 C11 IRM 3 IRM C12 C4 C 0 1 N N N 66.873 73.761 78.838 -3.648 0.441 0.643 C12 IRM 4 IRM C13 C5 C 0 1 N N N 66.667 73.792 80.275 -2.402 -0.174 0.808 C13 IRM 5 IRM C14 C6 C 0 1 N N N 66.224 74.938 80.840 -1.245 0.535 0.563 C14 IRM 6 IRM C15 C7 C 0 1 N N N 66.065 75.234 82.222 0.000 -0.080 0.728 C15 IRM 7 IRM C16 C8 C 0 1 N N N 65.669 76.450 82.636 1.157 0.629 0.482 C16 IRM 8 IRM C17 C9 C 0 1 N N N 65.607 76.892 83.984 2.403 0.015 0.647 C17 IRM 9 IRM C18 C10 C 0 1 N N N 65.335 78.145 84.415 3.559 0.724 0.401 C18 IRM 10 IRM C19 C11 C 0 1 N N N 65.599 78.504 85.795 4.805 0.109 0.566 C19 IRM 11 IRM C2 C12 C 0 1 N N N 68.101 71.249 67.204 -15.217 0.524 -0.640 C2 IRM 12 IRM C20 C13 C 0 1 N N N 65.632 79.744 86.287 5.961 0.817 0.320 C20 IRM 13 IRM C21 C14 C 0 1 N N N 65.940 80.080 87.633 7.209 0.201 0.485 C21 IRM 14 IRM C22 C15 C 0 1 N N N 66.121 81.318 88.149 8.354 0.904 0.242 C22 IRM 15 IRM C23 C16 C 0 1 N N N 66.382 81.464 89.569 9.606 0.286 0.408 C23 IRM 16 IRM C24 C17 C 0 1 N N N 66.631 82.600 90.223 10.746 0.985 0.165 C24 IRM 17 IRM C25 C18 C 0 1 N N N 66.852 82.656 91.624 12.008 0.362 0.332 C25 IRM 18 IRM C26 C19 C 0 1 N N N 67.135 83.771 92.308 13.129 1.050 0.094 C26 IRM 19 IRM C27 C20 C 0 1 N N N 67.245 83.759 93.810 14.472 0.387 0.272 C27 IRM 20 IRM C28 C21 C 0 1 N N N 68.689 83.958 94.286 14.953 -0.158 -1.074 C28 IRM 21 IRM C29 C22 C 0 1 N N N 68.789 83.833 95.775 16.295 -0.820 -0.897 C29 IRM 22 IRM C3 C23 C 0 1 N N N 67.637 71.234 68.656 -13.855 -0.148 -0.460 C3 IRM 23 IRM C30 C24 C 0 1 N N N 65.831 70.424 66.506 -17.059 0.986 -2.263 C30 IRM 24 IRM C31 C25 C 0 1 N N N 66.538 72.758 65.938 -14.727 0.633 -3.088 C31 IRM 25 IRM C33 C26 C 0 1 N N N 68.486 69.444 71.124 -11.894 -1.938 1.561 C33 IRM 26 IRM C34 C27 C 0 1 N N N 68.205 70.473 76.267 -7.119 -1.791 1.414 C34 IRM 27 IRM C35 C28 C 0 1 N N N 66.985 72.554 81.065 -2.324 -1.612 1.255 C35 IRM 28 IRM C36 C29 C 0 1 N N N 64.864 79.229 83.490 3.481 2.161 -0.046 C36 IRM 29 IRM C37 C30 C 0 1 N N N 66.103 82.563 87.307 8.276 2.341 -0.204 C37 IRM 30 IRM C38 C31 C 0 1 N N N 67.415 85.092 91.650 13.052 2.487 -0.352 C38 IRM 31 IRM C39 C32 C 0 1 N N N 69.886 83.669 96.494 16.450 -2.081 -1.214 C39 IRM 32 IRM C4 C33 C 0 1 N N N 68.788 71.472 69.620 -13.314 0.162 0.938 C4 IRM 33 IRM C40 C34 C 0 1 N N N 69.872 83.572 97.989 15.259 -2.905 -1.630 C40 IRM 34 IRM C41 C35 C 0 1 N N N 71.242 83.535 95.871 17.820 -2.708 -1.162 C41 IRM 35 IRM C5 C36 C 0 1 N N N 68.540 70.940 71.009 -11.972 -0.500 1.115 C5 IRM 36 IRM C6 C37 C 0 1 N N N 68.366 71.759 72.054 -10.851 0.187 0.877 C6 IRM 37 IRM C7 C38 C 0 1 N N N 68.219 71.341 73.409 -9.589 -0.436 1.044 C7 IRM 38 IRM C8 C39 C 0 1 N N N 68.004 72.192 74.416 -8.448 0.263 0.802 C8 IRM 39 IRM C9 C40 C 0 1 N N N 67.894 71.876 75.829 -7.197 -0.354 0.967 C9 IRM 40 IRM O32 O1 O 0 1 N N N 67.551 70.853 64.902 -16.010 -1.188 -2.150 O32 IRM 41 IRM H1 H1 H 0 1 N N N 67.355 73.827 76.262 -6.107 1.378 0.404 H1 IRM 42 IRM H2 H2 H 0 1 N N N 67.502 71.792 78.578 -4.748 -1.298 1.209 H2 IRM 43 IRM H3 H3 H 0 1 N N N 66.650 74.674 78.306 -3.704 1.471 0.324 H3 IRM 44 IRM H4 H4 H 0 1 N N N 65.957 75.729 80.155 -1.301 1.565 0.243 H4 IRM 45 IRM H5 H5 H 0 1 N N N 66.267 74.466 82.954 0.056 -1.110 1.047 H5 IRM 46 IRM H6 H6 H 0 1 N N N 65.371 77.155 81.874 1.101 1.659 0.162 H6 IRM 47 IRM H7 H7 H 0 1 N N N 65.797 76.150 84.745 2.458 -1.015 0.966 H7 IRM 48 IRM H8 H8 H 0 1 N N N 65.786 77.696 86.486 4.861 -0.921 0.886 H8 IRM 49 IRM H9 H9 H 0 1 N N N 68.676 70.328 67.026 -15.109 1.602 -0.524 H9 IRM 50 IRM H10 H10 H 0 1 N N N 68.756 72.122 67.070 -15.912 0.146 0.110 H10 IRM 51 IRM H11 H11 H 0 1 N N N 65.407 80.555 85.610 5.905 1.847 0.000 H11 IRM 52 IRM H12 H12 H 0 1 N N N 66.041 79.254 88.322 7.265 -0.829 0.805 H12 IRM 53 IRM H13 H13 H 0 1 N N N 66.374 80.559 90.158 9.661 -0.744 0.727 H13 IRM 54 IRM H14 H14 H 0 1 N N N 66.666 83.521 89.660 10.690 2.015 -0.155 H14 IRM 55 IRM H15 H15 H 0 1 N N N 66.787 81.731 92.178 12.064 -0.668 0.652 H15 IRM 56 IRM H16 H16 H 0 1 N N N 66.623 84.569 94.217 15.190 1.117 0.646 H16 IRM 57 IRM H17 H17 H 0 1 N N N 66.879 82.792 94.184 14.381 -0.432 0.984 H17 IRM 58 IRM H18 H18 H 0 1 N N N 69.330 83.196 93.818 14.235 -0.887 -1.449 H18 IRM 59 IRM H19 H19 H 0 1 N N N 69.031 84.959 93.986 15.044 0.662 -1.787 H19 IRM 60 IRM H20 H20 H 0 1 N N N 67.860 83.882 96.323 17.129 -0.254 -0.508 H20 IRM 61 IRM H21 H21 H 0 1 N N N 66.885 72.024 68.797 -13.964 -1.226 -0.576 H21 IRM 62 IRM H22 H22 H 0 1 N N N 67.186 70.255 68.875 -13.161 0.230 -1.210 H22 IRM 63 IRM H23 H23 H 0 1 N N N 65.389 70.759 67.456 -16.867 2.056 -2.177 H23 IRM 64 IRM H24 H24 H 0 1 N N N 65.073 70.475 65.711 -17.445 0.766 -3.259 H24 IRM 65 IRM H25 H25 H 0 1 N N N 66.184 69.387 66.611 -17.794 0.688 -1.515 H25 IRM 66 IRM H26 H26 H 0 1 N N N 66.113 73.146 66.875 -14.535 1.702 -3.001 H26 IRM 67 IRM H27 H27 H 0 1 N N N 67.394 73.381 65.638 -13.800 0.083 -2.926 H27 IRM 68 IRM H28 H28 H 0 1 N N N 65.771 72.784 65.150 -15.113 0.412 -4.083 H28 IRM 69 IRM H29 H29 H 0 1 N N N 68.302 69.163 72.171 -11.897 -2.590 0.688 H29 IRM 70 IRM H30 H30 H 0 1 N N N 67.673 69.057 70.492 -10.976 -2.093 2.128 H30 IRM 71 IRM H31 H31 H 0 1 N N N 69.444 69.016 70.793 -12.754 -2.170 2.191 H31 IRM 72 IRM H32 H32 H 0 1 N N N 68.077 70.392 77.357 -7.121 -2.444 0.540 H32 IRM 73 IRM H33 H33 H 0 1 N N N 67.522 69.772 75.765 -6.201 -1.947 1.981 H33 IRM 74 IRM H34 H34 H 0 1 N N N 69.244 70.228 76.000 -7.978 -2.024 2.043 H34 IRM 75 IRM H35 H35 H 0 1 N N N 66.778 72.735 82.130 -2.326 -2.264 0.382 H35 IRM 76 IRM H36 H36 H 0 1 N N N 66.362 71.721 80.707 -1.406 -1.767 1.822 H36 IRM 77 IRM H37 H37 H 0 1 N N N 68.047 72.300 80.936 -3.183 -1.844 1.884 H37 IRM 78 IRM H38 H38 H 0 1 N N N 64.708 80.157 84.060 3.483 2.813 0.828 H38 IRM 79 IRM H39 H39 H 0 1 N N N 65.621 79.401 82.711 4.340 2.393 -0.675 H39 IRM 80 IRM H40 H40 H 0 1 N N N 63.917 78.924 83.020 2.563 2.316 -0.613 H40 IRM 81 IRM H41 H41 H 0 1 N N N 66.272 83.442 87.947 8.278 2.993 0.669 H41 IRM 82 IRM H42 H42 H 0 1 N N N 66.898 82.504 86.549 9.135 2.573 -0.834 H42 IRM 83 IRM H43 H43 H 0 1 N N N 65.127 82.654 86.809 7.358 2.496 -0.771 H43 IRM 84 IRM H44 H44 H 0 1 N N N 67.619 85.850 92.421 13.054 3.139 0.521 H44 IRM 85 IRM H45 H45 H 0 1 N N N 68.290 84.995 90.991 13.911 2.719 -0.981 H45 IRM 86 IRM H46 H46 H 0 1 N N N 66.541 85.398 91.057 12.134 2.642 -0.919 H46 IRM 87 IRM H47 H47 H 0 1 N N N 69.686 70.981 69.216 -13.206 1.240 1.054 H47 IRM 88 IRM H48 H48 H 0 1 N N N 68.963 72.556 69.690 -14.008 -0.217 1.688 H48 IRM 89 IRM H49 H49 H 0 1 N N N 70.900 83.438 98.358 15.075 -2.765 -2.695 H49 IRM 90 IRM H50 H50 H 0 1 N N N 69.448 84.494 98.412 15.459 -3.958 -1.432 H50 IRM 91 IRM H51 H51 H 0 1 N N N 69.258 82.712 98.295 14.383 -2.589 -1.065 H51 IRM 92 IRM H52 H52 H 0 1 N N N 71.998 83.409 96.660 18.549 -1.964 -0.842 H52 IRM 93 IRM H53 H53 H 0 1 N N N 71.255 82.658 95.207 17.813 -3.538 -0.455 H53 IRM 94 IRM H54 H54 H 0 1 N N N 71.469 84.440 95.288 18.088 -3.077 -2.152 H54 IRM 95 IRM H55 H55 H 0 1 N N N 68.335 72.820 71.855 -10.907 1.217 0.557 H55 IRM 96 IRM H56 H56 H 0 1 N N N 68.285 70.286 73.632 -9.533 -1.466 1.364 H56 IRM 97 IRM H57 H57 H 0 1 N N N 67.900 73.233 74.149 -8.504 1.293 0.482 H57 IRM 98 IRM H58 H58 H 0 1 N N N 67.850 69.957 65.006 -16.356 -1.457 -3.012 H58 IRM 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IRM O32 C1 SING N N 1 IRM C31 C1 SING N N 2 IRM C1 C30 SING N N 3 IRM C1 C2 SING N N 4 IRM C2 C3 SING N N 5 IRM C3 C4 SING N N 6 IRM C4 C5 SING N N 7 IRM C5 C33 SING N N 8 IRM C5 C6 DOUB N E 9 IRM C6 C7 SING N N 10 IRM C7 C8 DOUB N E 11 IRM C8 C9 SING N N 12 IRM C9 C34 SING N N 13 IRM C9 C10 DOUB N E 14 IRM C10 C11 SING N N 15 IRM C11 C12 DOUB N E 16 IRM C12 C13 SING N N 17 IRM C13 C14 DOUB N E 18 IRM C13 C35 SING N N 19 IRM C14 C15 SING N N 20 IRM C15 C16 DOUB N E 21 IRM C16 C17 SING N N 22 IRM C36 C18 SING N N 23 IRM C17 C18 DOUB N E 24 IRM C18 C19 SING N N 25 IRM C19 C20 DOUB N E 26 IRM C20 C21 SING N N 27 IRM C37 C22 SING N N 28 IRM C21 C22 DOUB N E 29 IRM C22 C23 SING N N 30 IRM C23 C24 DOUB N E 31 IRM C24 C25 SING N N 32 IRM C25 C26 DOUB N E 33 IRM C38 C26 SING N N 34 IRM C26 C27 SING N N 35 IRM C27 C28 SING N N 36 IRM C28 C29 SING N N 37 IRM C29 C39 DOUB N N 38 IRM C41 C39 SING N N 39 IRM C39 C40 SING N N 40 IRM C10 H1 SING N N 41 IRM C11 H2 SING N N 42 IRM C12 H3 SING N N 43 IRM C14 H4 SING N N 44 IRM C15 H5 SING N N 45 IRM C16 H6 SING N N 46 IRM C17 H7 SING N N 47 IRM C19 H8 SING N N 48 IRM C2 H9 SING N N 49 IRM C2 H10 SING N N 50 IRM C20 H11 SING N N 51 IRM C21 H12 SING N N 52 IRM C23 H13 SING N N 53 IRM C24 H14 SING N N 54 IRM C25 H15 SING N N 55 IRM C27 H16 SING N N 56 IRM C27 H17 SING N N 57 IRM C28 H18 SING N N 58 IRM C28 H19 SING N N 59 IRM C29 H20 SING N N 60 IRM C3 H21 SING N N 61 IRM C3 H22 SING N N 62 IRM C30 H23 SING N N 63 IRM C30 H24 SING N N 64 IRM C30 H25 SING N N 65 IRM C31 H26 SING N N 66 IRM C31 H27 SING N N 67 IRM C31 H28 SING N N 68 IRM C33 H29 SING N N 69 IRM C33 H30 SING N N 70 IRM C33 H31 SING N N 71 IRM C34 H32 SING N N 72 IRM C34 H33 SING N N 73 IRM C34 H34 SING N N 74 IRM C35 H35 SING N N 75 IRM C35 H36 SING N N 76 IRM C35 H37 SING N N 77 IRM C36 H38 SING N N 78 IRM C36 H39 SING N N 79 IRM C36 H40 SING N N 80 IRM C37 H41 SING N N 81 IRM C37 H42 SING N N 82 IRM C37 H43 SING N N 83 IRM C38 H44 SING N N 84 IRM C38 H45 SING N N 85 IRM C38 H46 SING N N 86 IRM C4 H47 SING N N 87 IRM C4 H48 SING N N 88 IRM C40 H49 SING N N 89 IRM C40 H50 SING N N 90 IRM C40 H51 SING N N 91 IRM C41 H52 SING N N 92 IRM C41 H53 SING N N 93 IRM C41 H54 SING N N 94 IRM C6 H55 SING N N 95 IRM C7 H56 SING N N 96 IRM C8 H57 SING N N 97 IRM O32 H58 SING N N 98 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IRM InChI InChI 1.06 "InChI=1S/C40H58O/c1-33(2)19-13-22-36(5)25-16-28-37(6)26-14-23-34(3)20-11-12-21-35(4)24-15-27-38(7)29-17-30-39(8)31-18-32-40(9,10)41/h11-12,14-17,19-21,23-30,41H,13,18,22,31-32H2,1-10H3/b12-11+,23-14+,24-15+,28-16+,29-17+,34-20+,35-21+,36-25+,37-26+,38-27+,39-30+" IRM InChIKey InChI 1.06 CNYVJTJLUKKCGM-RGGGOQHISA-N IRM SMILES_CANONICAL CACTVS 3.385 "CC(C)=CCC/C(C)=C/C=C/C(C)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/C=C/C=C(\C)CCCC(C)(C)O" IRM SMILES CACTVS 3.385 "CC(C)=CCCC(C)=CC=CC(C)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCCC(C)(C)O" IRM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=CCC/C(=C/C=C/C(=C/C=C/C(=C/C=C/C=C(\C)/C=C/C=C(\C)/C=C/C=C(\C)/CCCC(C)(C)O)/C)/C)/C)C" IRM SMILES "OpenEye OEToolkits" 2.0.7 "CC(=CCCC(=CC=CC(=CC=CC(=CC=CC=C(C)C=CC=C(C)C=CC=C(C)CCCC(C)(C)O)C)C)C)C" # _pdbx_chem_comp_identifier.comp_id IRM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IRM "Create component" 2022-04-07 PDBE IRM "Modify descriptor" 2022-08-22 RCSB IRM "Initial release" 2022-10-05 RCSB IRM "Modify synonyms" 2022-10-05 PDBE # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 IRM Rhodopin ? ? 2 IRM "(6~{E},8~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E},26~{E})-2,6,10,14,19,23,27,31-octamethyldotriaconta-6,8,10,12,14,16,18,20,22,24,26,30-dodecaen-2-ol" ? ? #