data_IRP # _chem_comp.id IRP _chem_comp.name "(1S)-1(9-DEAZAHYPOXANTHIN-9YL)1,4-DIDEOXY-1,4-IMINO-D-RIBITOL-5-PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N4 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 346.233 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CJB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IRP P P P 0 1 N N N 65.962 35.535 71.638 -1.003 0.058 -4.742 P IRP 1 IRP O1P O1P O 0 1 N N N 66.247 36.934 71.256 -2.099 1.034 -5.404 O1P IRP 2 IRP O2P O2P O 0 1 N N N 65.598 34.682 70.505 0.173 -0.225 -5.803 O2P IRP 3 IRP O3P O3P O 0 1 N N N 67.096 35.001 72.421 -1.645 -1.220 -4.364 O3P IRP 4 IRP "O5'" O5* O 0 1 N N N 64.832 35.552 72.703 -0.385 0.757 -3.430 "O5'" IRP 5 IRP "C5'" C5* C 0 1 N N N 63.897 36.583 72.970 0.574 -0.152 -2.890 "C5'" IRP 6 IRP "C4'" C4* C 0 1 N N R 62.690 35.921 73.516 1.202 0.453 -1.634 "C4'" IRP 7 IRP "N4'" N4* N 0 1 N N N 63.020 35.129 74.658 0.167 0.663 -0.599 "N4'" IRP 8 IRP "C3'" C3* C 0 1 N N R 61.679 36.952 73.904 2.240 -0.519 -1.044 "C3'" IRP 9 IRP "O3'" O3* O 0 1 N N N 60.465 36.603 73.245 3.530 0.094 -1.005 "O3'" IRP 10 IRP "C2'" C2* C 0 1 N N S 61.618 36.829 75.395 1.745 -0.819 0.389 "C2'" IRP 11 IRP "O2'" O2* O 0 1 N N N 60.277 36.679 75.854 2.841 -0.878 1.305 "O2'" IRP 12 IRP "C1'" C1* C 0 1 N N S 62.476 35.628 75.869 0.834 0.397 0.700 "C1'" IRP 13 IRP C9 C9 C 0 1 Y N N 63.644 36.150 76.710 -0.181 0.047 1.757 C9 IRP 14 IRP C8 C8 C 0 1 Y N N 64.950 36.364 76.250 -1.377 -0.540 1.546 C8 IRP 15 IRP N7 N7 N 0 1 Y N N 65.780 36.824 77.132 -2.020 -0.699 2.735 N7 IRP 16 IRP C4 C4 C 0 1 Y N N 63.701 36.537 78.065 -0.049 0.271 3.144 C4 IRP 17 IRP O6 O6 O 0 1 N N N 66.539 37.813 79.915 -2.360 -0.501 5.703 O6 IRP 18 IRP C6 C6 C 0 1 Y N N 65.415 37.418 79.584 -1.357 -0.096 5.139 C6 IRP 19 IRP N1 N1 N 0 1 Y N N 64.362 37.401 80.519 -0.348 0.463 5.842 N1 IRP 20 IRP C2 C2 C 0 1 Y N N 63.052 36.974 80.240 0.767 0.911 5.210 C2 IRP 21 IRP N3 N3 N 0 1 Y N N 62.675 36.529 79.002 0.913 0.825 3.919 N3 IRP 22 IRP C5 C5 C 0 1 Y N N 65.020 36.948 78.289 -1.223 -0.202 3.740 C5 IRP 23 IRP HO1 HO1 H 0 1 N N N 66.483 37.487 71.991 -2.443 0.579 -6.185 HO1 IRP 24 IRP HO2 HO2 H 0 1 N N N 65.414 33.782 70.750 0.564 0.631 -6.022 HO2 IRP 25 IRP "H5'1" 1H5* H 0 0 N N N 64.299 37.384 73.632 1.352 -0.341 -3.630 "H5'1" IRP 26 IRP "H5'2" 2H5* H 0 0 N N N 63.685 37.228 72.085 0.082 -1.090 -2.634 "H5'2" IRP 27 IRP "H4'" H4* H 0 1 N N N 62.267 35.255 72.727 1.680 1.402 -1.879 "H4'" IRP 28 IRP "HN'4" 4HN* H 0 0 N N N 64.030 35.012 74.736 -0.060 1.646 -0.612 "HN'4" IRP 29 IRP "H3'" H3* H 0 1 N N N 61.903 38.006 73.620 2.276 -1.436 -1.632 "H3'" IRP 30 IRP "HO'3" 3HO* H 0 0 N N N 59.822 37.258 73.491 4.133 -0.548 -0.608 "HO'3" IRP 31 IRP "H2'" H2* H 0 1 N N N 62.027 37.770 75.829 1.173 -1.747 0.414 "H2'" IRP 32 IRP "HO'2" 2HO* H 0 0 N N N 60.238 36.601 76.800 3.368 -1.651 1.061 "HO'2" IRP 33 IRP "H1'" H1* H 0 1 N N N 61.897 34.883 76.464 1.430 1.255 1.010 "H1'" IRP 34 IRP H8 H8 H 0 1 N N N 65.313 36.176 75.225 -1.764 -0.839 0.583 H8 IRP 35 IRP H7 H7 H 0 1 N N N 66.764 37.031 76.961 -2.896 -1.097 2.855 H7 IRP 36 IRP H1 H1 H 0 1 N N N 64.562 37.721 81.466 -0.420 0.545 6.805 H1 IRP 37 IRP H2 H2 H 0 1 N N N 62.282 36.988 81.030 1.558 1.354 5.797 H2 IRP 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IRP P O1P SING N N 1 IRP P O2P SING N N 2 IRP P O3P DOUB N N 3 IRP P "O5'" SING N N 4 IRP O1P HO1 SING N N 5 IRP O2P HO2 SING N N 6 IRP "O5'" "C5'" SING N N 7 IRP "C5'" "C4'" SING N N 8 IRP "C5'" "H5'1" SING N N 9 IRP "C5'" "H5'2" SING N N 10 IRP "C4'" "N4'" SING N N 11 IRP "C4'" "C3'" SING N N 12 IRP "C4'" "H4'" SING N N 13 IRP "N4'" "C1'" SING N N 14 IRP "N4'" "HN'4" SING N N 15 IRP "C3'" "O3'" SING N N 16 IRP "C3'" "C2'" SING N N 17 IRP "C3'" "H3'" SING N N 18 IRP "O3'" "HO'3" SING N N 19 IRP "C2'" "O2'" SING N N 20 IRP "C2'" "C1'" SING N N 21 IRP "C2'" "H2'" SING N N 22 IRP "O2'" "HO'2" SING N N 23 IRP "C1'" C9 SING N N 24 IRP "C1'" "H1'" SING N N 25 IRP C9 C8 DOUB Y N 26 IRP C9 C4 SING Y N 27 IRP C8 N7 SING Y N 28 IRP C8 H8 SING N N 29 IRP N7 C5 SING Y N 30 IRP N7 H7 SING N N 31 IRP C4 N3 SING Y N 32 IRP C4 C5 DOUB Y N 33 IRP O6 C6 DOUB N N 34 IRP C6 N1 SING Y N 35 IRP C6 C5 SING Y N 36 IRP N1 C2 SING Y N 37 IRP N1 H1 SING N N 38 IRP C2 N3 DOUB Y N 39 IRP C2 H2 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IRP SMILES ACDLabs 10.04 "O=P(OCC3NC(c2c1N=CNC(=O)c1nc2)C(O)C3O)(O)O" IRP SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1[C@@H](CO[P](O)(O)=O)N[C@H]([C@@H]1O)c2c[nH]c3C(=O)NC=Nc23" IRP SMILES CACTVS 3.341 "O[CH]1[CH](CO[P](O)(O)=O)N[CH]([CH]1O)c2c[nH]c3C(=O)NC=Nc23" IRP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c(c2c([nH]1)C(=O)NC=N2)[C@H]3[C@@H]([C@@H]([C@H](N3)COP(=O)(O)O)O)O" IRP SMILES "OpenEye OEToolkits" 1.5.0 "c1c(c2c([nH]1)C(=O)NC=N2)C3C(C(C(N3)COP(=O)(O)O)O)O" IRP InChI InChI 1.03 "InChI=1S/C11H15N4O7P/c16-9-5(2-22-23(19,20)21)15-7(10(9)17)4-1-12-8-6(4)13-3-14-11(8)18/h1,3,5,7,9-10,12,15-17H,2H2,(H,13,14,18)(H2,19,20,21)/t5-,7+,9-,10+/m1/s1" IRP InChIKey InChI 1.03 VJTAXXUIRYOXBT-KUBHLMPHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IRP "SYSTEMATIC NAME" ACDLabs 10.04 "[(2R,3R,4S,5S)-3,4-dihydroxy-5-(4-oxo-4,5-dihydro-3H-pyrrolo[3,2-d]pyrimidin-7-yl)pyrrolidin-2-yl]methyl dihydrogen phosphate" IRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5S)-3,4-dihydroxy-5-(4-oxo-3,5-dihydropyrrolo[4,5-d]pyrimidin-7-yl)pyrrolidin-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IRP "Create component" 1999-07-08 RCSB IRP "Modify descriptor" 2011-06-04 RCSB #