data_IRY
#
_chem_comp.id IRY
_chem_comp.name "[(2~{S})-2,3-bis(oxidanyl)propyl] 8-hexylselanyloctanoate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H34 O4 Se"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-08-03
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 381.409
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IRY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8Q2O
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IRY SE1 SE1 SE 0 0 N N N N N N -0.988 -18.383 32.542 -4.423 -0.747 0.108 SE1 IRY 1
IRY C1 C1 C 0 1 N N N N N N 1.827 -20.197 20.500 10.752 -0.488 -0.164 C1 IRY 2
IRY C10 C2 C 0 1 N N N N N N -0.165 -20.384 30.674 -1.583 -0.412 0.036 C10 IRY 3
IRY C11 C3 C 0 1 N N N N N N -1.450 -19.706 31.184 -2.861 0.421 -0.085 C11 IRY 4
IRY C12 C4 C 0 1 N N N N N N -2.549 -17.916 33.592 -5.883 0.546 -0.084 C12 IRY 5
IRY C13 C5 C 0 1 N N N N N N -2.431 -16.513 34.174 -7.226 -0.178 0.038 C13 IRY 6
IRY C14 C6 C 0 1 N N N N N N -3.700 -16.113 34.924 -8.365 0.832 -0.112 C14 IRY 7
IRY C15 C7 C 0 1 N N N N N N -4.987 -16.169 34.090 -9.707 0.108 0.011 C15 IRY 8
IRY C16 C8 C 0 1 N N N N N N -6.115 -15.344 34.720 -10.847 1.117 -0.139 C16 IRY 9
IRY C17 C9 C 0 1 N N N N N N -7.238 -14.982 33.748 -12.189 0.394 -0.017 C17 IRY 10
IRY C2 C10 C 0 1 N N N N N N 1.164 -21.562 20.328 9.524 0.425 -0.171 C2 IRY 11
IRY C3 C11 C 0 1 N N N N N N -0.093 -21.678 21.180 8.257 -0.423 -0.030 C3 IRY 12
IRY C4 C12 C 0 1 N N N N N N 0.483 -21.828 23.406 5.889 -0.163 -0.054 C4 IRY 13
IRY C5 C13 C 0 1 N N N N N N 0.205 -22.201 24.852 4.630 0.657 -0.174 C5 IRY 14
IRY C6 C14 C 0 1 N N N N N N 0.603 -20.974 25.687 3.411 -0.255 -0.023 C6 IRY 15
IRY C7 C15 C 0 1 N N N N N N 0.739 -21.199 27.189 2.133 0.578 -0.144 C7 IRY 16
IRY C8 C16 C 0 1 N N N N N N -0.102 -20.228 28.038 0.914 -0.333 0.007 C8 IRY 17
IRY C9 C17 C 0 1 N N N N N N 0.483 -19.801 29.397 -0.364 0.500 -0.115 C9 IRY 18
IRY O1 O1 O 0 1 N N N N N N 0.988 -19.256 19.918 11.925 0.290 -0.412 O1 IRY 19
IRY O2 O2 O 0 1 N N N N N N 0.771 -21.630 18.990 9.606 1.343 0.921 O2 IRY 20
IRY O3 O3 O 0 1 N N N N N N 0.030 -22.545 22.283 7.089 0.430 -0.155 O3 IRY 21
IRY O4 O4 O 0 1 N N N N N N 1.114 -20.839 23.252 5.817 -1.355 0.133 O4 IRY 22
IRY H1 H1 H 0 1 N N N N N N 2.807 -20.188 20.000 10.837 -0.975 0.808 H1 IRY 23
IRY H2 H2 H 0 1 N N N N N N 1.959 -19.974 21.569 10.646 -1.245 -0.941 H2 IRY 24
IRY H3 H3 H 0 1 N N N N N N -0.405 -21.438 30.471 -1.557 -0.896 1.013 H3 IRY 25
IRY H4 H4 H 0 1 N N N N N N 0.582 -20.326 31.480 -1.569 -1.171 -0.746 H4 IRY 26
IRY H5 H5 H 0 1 N N N N N N -1.960 -19.209 30.346 -2.888 0.905 -1.061 H5 IRY 27
IRY H6 H6 H 0 1 N N N N N N -2.116 -20.464 31.622 -2.876 1.180 0.697 H6 IRY 28
IRY H7 H7 H 0 1 N N N N N N -3.440 -17.962 32.948 -5.805 1.301 0.698 H7 IRY 29
IRY H8 H8 H 0 1 N N N N N N -2.654 -18.637 34.416 -5.817 1.026 -1.060 H8 IRY 30
IRY H9 H9 H 0 1 N N N N N N -1.580 -16.485 34.870 -7.304 -0.933 -0.744 H9 IRY 31
IRY H10 H10 H 0 1 N N N N N N -2.259 -15.799 33.355 -7.292 -0.658 1.015 H10 IRY 32
IRY H11 H11 H 0 1 N N N N N N -3.572 -15.082 35.287 -8.287 1.587 0.671 H11 IRY 33
IRY H12 H12 H 0 1 N N N N N N -3.819 -16.792 35.782 -8.299 1.312 -1.088 H12 IRY 34
IRY H13 H13 H 0 1 N N N N N N -5.314 -17.216 34.011 -9.786 -0.647 -0.771 H13 IRY 35
IRY H14 H14 H 0 1 N N N N N N -4.777 -15.774 33.085 -9.774 -0.372 0.987 H14 IRY 36
IRY H15 H15 H 0 1 N N N N N N -5.684 -14.412 35.113 -10.769 1.873 0.643 H15 IRY 37
IRY H16 H16 H 0 1 N N N N N N -6.548 -15.925 35.548 -10.781 1.598 -1.116 H16 IRY 38
IRY H17 H17 H 0 1 N N N N N N -8.004 -14.394 34.274 -12.268 -0.362 -0.799 H17 IRY 39
IRY H18 H18 H 0 1 N N N N N N -6.827 -14.389 32.917 -12.255 -0.087 0.959 H18 IRY 40
IRY H19 H19 H 0 1 N N N N N N -7.691 -15.903 33.352 -13.001 1.113 -0.124 H19 IRY 41
IRY H20 H20 H 0 1 N N N N N N 1.873 -22.361 20.590 9.488 0.978 -1.109 H20 IRY 42
IRY H21 H21 H 0 1 N N N N N N -0.347 -20.676 21.556 8.239 -1.181 -0.812 H21 IRY 43
IRY H22 H22 H 0 1 N N N N N N -0.909 -22.047 20.541 8.251 -0.907 0.947 H22 IRY 44
IRY H23 H23 H 0 1 N N N N N N -0.862 -22.428 24.990 4.615 1.416 0.609 H23 IRY 45
IRY H24 H24 H 0 1 N N N N N N 0.807 -23.074 25.144 4.603 1.141 -1.150 H24 IRY 46
IRY H25 H25 H 0 1 N N N N N N 1.572 -20.613 25.312 3.425 -1.014 -0.805 H25 IRY 47
IRY H26 H26 H 0 1 N N N N N N -0.162 -20.199 25.531 3.438 -0.739 0.953 H26 IRY 48
IRY H27 H27 H 0 1 N N N N N N 0.419 -22.226 27.417 2.118 1.337 0.638 H27 IRY 49
IRY H28 H28 H 0 1 N N N N N N 1.797 -21.075 27.465 2.106 1.062 -1.120 H28 IRY 50
IRY H29 H29 H 0 1 N N N N N N -0.258 -19.316 27.443 0.928 -1.092 -0.776 H29 IRY 51
IRY H30 H30 H 0 1 N N N N N N -1.072 -20.710 28.231 0.940 -0.817 0.983 H30 IRY 52
IRY H31 H31 H 0 1 N N N N N N 1.544 -20.093 29.404 -0.391 0.984 -1.091 H31 IRY 53
IRY H32 H32 H 0 1 N N N N N N 0.404 -18.706 29.459 -0.379 1.258 0.668 H32 IRY 54
IRY H33 H33 H 0 1 N N N N N N 1.371 -18.391 20.007 12.743 -0.225 -0.422 H33 IRY 55
IRY H34 H34 H 0 1 N N N N N N 0.349 -22.465 18.825 9.642 0.919 1.789 H34 IRY 56
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IRY O2 C2 SING N N 1
IRY O1 C1 SING N N 2
IRY C2 C1 SING N N 3
IRY C2 C3 SING N N 4
IRY C3 O3 SING N N 5
IRY O3 C4 SING N N 6
IRY O4 C4 DOUB N N 7
IRY C4 C5 SING N N 8
IRY C5 C6 SING N N 9
IRY C6 C7 SING N N 10
IRY C7 C8 SING N N 11
IRY C8 C9 SING N N 12
IRY C9 C10 SING N N 13
IRY C10 C11 SING N N 14
IRY C11 SE1 SING N N 15
IRY SE1 C12 SING N N 16
IRY C12 C13 SING N N 17
IRY C17 C16 SING N N 18
IRY C15 C16 SING N N 19
IRY C15 C14 SING N N 20
IRY C13 C14 SING N N 21
IRY C1 H1 SING N N 22
IRY C1 H2 SING N N 23
IRY C10 H3 SING N N 24
IRY C10 H4 SING N N 25
IRY C11 H5 SING N N 26
IRY C11 H6 SING N N 27
IRY C12 H7 SING N N 28
IRY C12 H8 SING N N 29
IRY C13 H9 SING N N 30
IRY C13 H10 SING N N 31
IRY C14 H11 SING N N 32
IRY C14 H12 SING N N 33
IRY C15 H13 SING N N 34
IRY C15 H14 SING N N 35
IRY C16 H15 SING N N 36
IRY C16 H16 SING N N 37
IRY C17 H17 SING N N 38
IRY C17 H18 SING N N 39
IRY C17 H19 SING N N 40
IRY C2 H20 SING N N 41
IRY C3 H21 SING N N 42
IRY C3 H22 SING N N 43
IRY C5 H23 SING N N 44
IRY C5 H24 SING N N 45
IRY C6 H25 SING N N 46
IRY C6 H26 SING N N 47
IRY C7 H27 SING N N 48
IRY C7 H28 SING N N 49
IRY C8 H29 SING N N 50
IRY C8 H30 SING N N 51
IRY C9 H31 SING N N 52
IRY C9 H32 SING N N 53
IRY O1 H33 SING N N 54
IRY O2 H34 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IRY InChI InChI 1.06 "InChI=1S/C17H34O4Se/c1-2-3-4-9-12-22-13-10-7-5-6-8-11-17(20)21-15-16(19)14-18/h16,18-19H,2-15H2,1H3/t16-/m0/s1"
IRY InChIKey InChI 1.06 NDMGORYXSUYATF-INIZCTEOSA-N
IRY SMILES_CANONICAL CACTVS 3.385 "CCCCCC[Se]CCCCCCCC(=O)OC[C@@H](O)CO"
IRY SMILES CACTVS 3.385 "CCCCCC[Se]CCCCCCCC(=O)OC[CH](O)CO"
IRY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCC[Se]CCCCCCCC(=O)OC[C@H](CO)O"
IRY SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCC[Se]CCCCCCCC(=O)OCC(CO)O"
#
_pdbx_chem_comp_identifier.comp_id IRY
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "[(2~{S})-2,3-bis(oxidanyl)propyl] 8-hexylselanyloctanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IRY "Create component" 2023-08-04 PDBE
IRY "Initial release" 2024-05-15 RCSB
IRY "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id IRY
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category Lipid/lipid-like
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom SE1
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#