data_IS1
#
_chem_comp.id IS1
_chem_comp.name "3-[(1E)-3-oxo-3-({4-[1-(phenylcarbonyl)piperidin-4-yl]butyl}amino)prop-1-en-1-yl]-1-beta-D-ribofuranosylpyridinium"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H38 N3 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "3-((E)-3-(4-(1-benzoylpiperidin-4-yl)butylamino)-3-oxoprop-1-enyl)-1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyridinium"
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2009-02-22
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 524.629
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code IS1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3G8E
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
IS1 CAM CAM C 0 1 Y N N -10.221 3.739 -10.400 -11.421 0.582 0.522 CAM IS1 1
IS1 CAI CAI C 0 1 Y N N -10.066 3.587 -9.027 -12.422 1.469 0.183 CAI IS1 2
IS1 CAH CAH C 0 1 Y N N -10.724 2.558 -8.366 -12.917 1.496 -1.109 CAH IS1 3
IS1 CAJ CAJ C 0 1 Y N N -11.537 1.682 -9.079 -12.414 0.635 -2.068 CAJ IS1 4
IS1 CAN CAN C 0 1 Y N N -11.693 1.836 -10.452 -11.414 -0.257 -1.742 CAN IS1 5
IS1 CBE CBE C 0 1 Y N N -11.035 2.865 -11.114 -10.909 -0.289 -0.441 CBE IS1 6
IS1 CBC CBC C 0 1 N N N -11.196 3.031 -12.627 -9.836 -1.242 -0.084 CBC IS1 7
IS1 OAB OAB O 0 1 N N N -12.208 3.544 -13.100 -9.954 -2.421 -0.358 OAB IS1 8
IS1 NBK NBK N 0 1 N N N -10.230 2.612 -13.442 -8.727 -0.804 0.544 NBK IS1 9
IS1 CAY CAY C 0 1 N N N -10.353 2.830 -14.902 -8.605 0.601 0.955 CAY IS1 10
IS1 CAW CAW C 0 1 N N N -9.048 3.412 -15.452 -7.302 1.170 0.386 CAW IS1 11
IS1 CAX CAX C 0 1 N N N -9.026 1.979 -12.859 -7.620 -1.724 0.836 CAX IS1 12
IS1 CAV CAV C 0 1 N N N -7.766 2.586 -13.477 -6.325 -1.134 0.268 CAV IS1 13
IS1 CBF CBF C 0 1 N N N -8.128 3.821 -14.299 -6.131 0.285 0.819 CBF IS1 14
IS1 CAU CAU C 0 1 N N N -6.821 4.422 -14.814 -4.824 0.870 0.280 CAU IS1 15
IS1 CAS CAS C 0 1 N N N -6.843 5.950 -14.799 -3.643 0.057 0.815 CAS IS1 16
IS1 CAR CAR C 0 1 N N N -5.397 6.416 -14.960 -2.336 0.642 0.277 CAR IS1 17
IS1 CAT CAT C 0 1 N N N -5.296 7.842 -15.500 -1.155 -0.171 0.812 CAT IS1 18
IS1 NAZ NAZ N 0 1 N N N -3.881 8.059 -15.824 0.097 0.389 0.297 NAZ IS1 19
IS1 CBB CBB C 0 1 N N N -3.029 8.506 -14.906 1.275 -0.169 0.638 CBB IS1 20
IS1 OAA OAA O 0 1 N N N -3.380 8.792 -13.757 1.300 -1.137 1.374 OAA IS1 21
IS1 CAF CAF C 0 1 N N N -1.705 8.673 -15.268 2.526 0.391 0.123 CAF IS1 22
IS1 CAG CAG C 0 1 N N N -0.808 9.199 -14.341 3.705 -0.167 0.464 CAG IS1 23
IS1 CBD CBD C 0 1 Y N N 0.525 9.384 -14.675 4.963 0.396 -0.054 CBD IS1 24
IS1 CAP CAP C 0 1 Y N N 1.394 9.918 -13.727 6.192 -0.173 0.292 CAP IS1 25
IS1 CAL CAL C 0 1 Y N N 1.006 9.036 -15.931 4.949 1.509 -0.908 CAL IS1 26
IS1 CAK CAK C 0 1 Y N N 2.346 9.212 -16.254 6.159 1.998 -1.366 CAK IS1 27
IS1 CAO CAO C 0 1 Y N N 3.220 9.747 -15.312 7.333 1.381 -0.972 CAO IS1 28
IS1 NBL NBL N 1 1 Y N N 2.746 10.090 -14.042 7.317 0.332 -0.172 NBL IS1 29
IS1 "C1'" C1* C 0 1 N N R 3.682 10.612 -13.015 8.587 -0.289 0.212 C1* IS1 30
IS1 "O4'" O4* O 0 1 N N N 4.855 9.797 -12.816 9.594 0.721 0.433 O4* IS1 31
IS1 "C4'" C4* C 0 1 N N R 5.506 10.311 -11.630 10.858 0.033 0.309 C4* IS1 32
IS1 "C5'" C5* C 0 1 N N N 6.434 9.520 -10.818 11.980 1.030 0.012 C5* IS1 33
IS1 "O5'" O5* O 0 1 N N N 6.539 10.162 -9.447 12.170 1.884 1.142 O5* IS1 34
IS1 "C3'" C3* C 0 1 N N S 4.421 11.082 -10.881 10.666 -0.931 -0.882 C3* IS1 35
IS1 "O3'" O3* O 0 1 N N N 4.399 12.406 -10.296 11.337 -2.169 -0.638 O3* IS1 36
IS1 "C2'" C2* C 0 1 N N R 3.155 10.641 -11.561 9.137 -1.148 -0.948 C2* IS1 37
IS1 "O2'" O2* O 0 1 N N N 1.950 11.105 -10.921 8.818 -2.527 -0.745 O2* IS1 38
IS1 HAM HAM H 0 1 N N N -9.708 4.538 -10.914 -11.032 0.565 1.529 HAM IS1 39
IS1 HAI HAI H 0 1 N N N -9.435 4.268 -8.475 -12.819 2.143 0.927 HAI IS1 40
IS1 HAH HAH H 0 1 N N N -10.605 2.438 -7.299 -13.701 2.192 -1.369 HAH IS1 41
IS1 HAJ HAJ H 0 1 N N N -12.048 0.881 -8.565 -12.806 0.662 -3.074 HAJ IS1 42
IS1 HAN HAN H 0 1 N N N -12.325 1.156 -11.004 -11.022 -0.929 -2.491 HAN IS1 43
IS1 HAY HAY H 0 1 N N N -10.562 1.870 -15.398 -9.452 1.169 0.570 HAY IS1 44
IS1 HAYA HAYA H 0 0 N N N -11.175 3.535 -15.096 -8.586 0.663 2.043 HAYA IS1 45
IS1 HAW HAW H 0 1 N N N -8.543 2.653 -16.068 -7.359 1.191 -0.702 HAW IS1 46
IS1 HAWA HAWA H 0 0 N N N -9.277 4.298 -16.062 -7.152 2.182 0.762 HAWA IS1 47
IS1 HAX HAX H 0 1 N N N -9.016 2.149 -11.772 -7.522 -1.848 1.915 HAX IS1 48
IS1 HAXA HAXA H 0 0 N N N -9.048 0.899 -13.068 -7.815 -2.691 0.372 HAXA IS1 49
IS1 HAV HAV H 0 1 N N N -7.071 2.875 -12.675 -5.481 -1.759 0.560 HAV IS1 50
IS1 HAVA HAVA H 0 0 N N N -7.292 1.842 -14.134 -6.390 -1.096 -0.820 HAVA IS1 51
IS1 HBF HBF H 0 1 N N N -8.665 4.567 -13.695 -6.090 0.244 1.907 HBF IS1 52
IS1 HAU HAU H 0 1 N N N -5.999 4.077 -14.170 -4.829 0.829 -0.809 HAU IS1 53
IS1 HAUA HAUA H 0 0 N N N -6.684 4.095 -15.855 -4.729 1.906 0.605 HAUA IS1 54
IS1 HAS HAS H 0 1 N N N -7.462 6.332 -15.624 -3.638 0.098 1.905 HAS IS1 55
IS1 HASA HASA H 0 0 N N N -7.275 6.327 -13.860 -3.739 -0.979 0.491 HASA IS1 56
IS1 HAR HAR H 0 1 N N N -4.909 6.382 -13.975 -2.341 0.601 -0.812 HAR IS1 57
IS1 HARA HARA H 0 0 N N N -4.909 5.748 -15.685 -2.241 1.678 0.602 HARA IS1 58
IS1 HAT HAT H 0 1 N N N -5.920 7.960 -16.398 -1.150 -0.130 1.901 HAT IS1 59
IS1 HATA HATA H 0 0 N N N -5.653 8.575 -14.761 -1.250 -1.207 0.488 HATA IS1 60
IS1 HNAZ HNAZ H 0 0 N N N -3.553 7.868 -16.749 0.077 1.161 -0.290 HNAZ IS1 61
IS1 HAF HAF H 0 1 N N N -1.370 8.399 -16.258 2.505 1.251 -0.531 HAF IS1 62
IS1 HAG HAG H 0 1 N N N -1.154 9.465 -13.353 3.727 -1.026 1.117 HAG IS1 63
IS1 HAP HAP H 0 1 N N N 1.025 10.199 -12.751 6.220 -1.033 0.944 HAP IS1 64
IS1 HAL HAL H 0 1 N N N 0.330 8.624 -16.665 4.018 1.971 -1.200 HAL IS1 65
IS1 HAK HAK H 0 1 N N N 2.708 8.935 -17.233 6.187 2.853 -2.025 HAK IS1 66
IS1 HAO HAO H 0 1 N N N 4.260 9.897 -15.561 8.278 1.761 -1.329 HAO IS1 67
IS1 "H1'" H1* H 0 1 N N N 3.857 11.610 -13.444 8.456 -0.897 1.108 H1* IS1 68
IS1 "H4'" H4* H 0 1 N N N 6.342 10.930 -11.987 11.077 -0.525 1.219 H4* IS1 69
IS1 "H5'" H5* H 0 1 N N N 6.059 8.490 -10.720 12.903 0.487 -0.192 H5* IS1 70
IS1 "H5'A" H5*A H 0 0 N N N 7.424 9.490 -11.297 11.712 1.630 -0.857 H5*A IS1 71
IS1 "HO5'" HO5* H 0 0 N N N 6.561 9.485 -8.781 12.868 2.543 1.024 HO5* IS1 72
IS1 "H3'" H3* H 0 1 N N N 4.704 10.858 -9.842 11.029 -0.477 -1.804 H3* IS1 73
IS1 "HO3'" HO3* H 0 0 N N N 4.394 12.334 -9.349 12.294 -2.082 -0.528 HO3* IS1 74
IS1 "H2'" H2* H 0 1 N N N 2.603 9.692 -11.492 8.743 -0.800 -1.902 H2* IS1 75
IS1 "HO2'" HO2* H 0 0 N N N 2.105 11.207 -9.989 9.141 -3.112 -1.444 HO2* IS1 76
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
IS1 CAM CAI DOUB Y N 1
IS1 CAM CBE SING Y N 2
IS1 CAI CAH SING Y N 3
IS1 CAH CAJ DOUB Y N 4
IS1 CAJ CAN SING Y N 5
IS1 CAN CBE DOUB Y N 6
IS1 CBE CBC SING N N 7
IS1 CBC OAB DOUB N N 8
IS1 CBC NBK SING N N 9
IS1 NBK CAY SING N N 10
IS1 NBK CAX SING N N 11
IS1 CAY CAW SING N N 12
IS1 CAW CBF SING N N 13
IS1 CAX CAV SING N N 14
IS1 CAV CBF SING N N 15
IS1 CBF CAU SING N N 16
IS1 CAU CAS SING N N 17
IS1 CAS CAR SING N N 18
IS1 CAR CAT SING N N 19
IS1 CAT NAZ SING N N 20
IS1 NAZ CBB SING N N 21
IS1 CBB OAA DOUB N N 22
IS1 CBB CAF SING N N 23
IS1 CAF CAG DOUB N N 24
IS1 CAG CBD SING N N 25
IS1 CBD CAP DOUB Y N 26
IS1 CBD CAL SING Y N 27
IS1 CAP NBL SING Y N 28
IS1 CAL CAK DOUB Y N 29
IS1 CAK CAO SING Y N 30
IS1 CAO NBL DOUB Y N 31
IS1 NBL "C1'" SING N N 32
IS1 "C1'" "O4'" SING N N 33
IS1 "C1'" "C2'" SING N N 34
IS1 "O4'" "C4'" SING N N 35
IS1 "C4'" "C5'" SING N N 36
IS1 "C4'" "C3'" SING N N 37
IS1 "C5'" "O5'" SING N N 38
IS1 "C3'" "O3'" SING N N 39
IS1 "C3'" "C2'" SING N N 40
IS1 "C2'" "O2'" SING N N 41
IS1 CAM HAM SING N N 42
IS1 CAI HAI SING N N 43
IS1 CAH HAH SING N N 44
IS1 CAJ HAJ SING N N 45
IS1 CAN HAN SING N N 46
IS1 CAY HAY SING N E 47
IS1 CAY HAYA SING N N 48
IS1 CAW HAW SING N N 49
IS1 CAW HAWA SING N N 50
IS1 CAX HAX SING N N 51
IS1 CAX HAXA SING N N 52
IS1 CAV HAV SING N N 53
IS1 CAV HAVA SING N N 54
IS1 CBF HBF SING N N 55
IS1 CAU HAU SING N N 56
IS1 CAU HAUA SING N N 57
IS1 CAS HAS SING N N 58
IS1 CAS HASA SING N N 59
IS1 CAR HAR SING N N 60
IS1 CAR HARA SING N N 61
IS1 CAT HAT SING N N 62
IS1 CAT HATA SING N N 63
IS1 NAZ HNAZ SING N N 64
IS1 CAF HAF SING N N 65
IS1 CAG HAG SING N N 66
IS1 CAP HAP SING N N 67
IS1 CAL HAL SING N N 68
IS1 CAK HAK SING N N 69
IS1 CAO HAO SING N N 70
IS1 "C1'" "H1'" SING N N 71
IS1 "C4'" "H4'" SING N N 72
IS1 "C5'" "H5'" SING N N 73
IS1 "C5'" "H5'A" SING N N 74
IS1 "O5'" "HO5'" SING N N 75
IS1 "C3'" "H3'" SING N N 76
IS1 "O3'" "HO3'" SING N N 77
IS1 "C2'" "H2'" SING N N 78
IS1 "O2'" "HO2'" SING N N 79
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
IS1 SMILES ACDLabs 10.04 "O=C(c1ccccc1)N2CCC(CC2)CCCCNC(=O)\C=C\c3ccc[n+](c3)C4OC(C(O)C4O)CO"
IS1 SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)[n+]2cccc(/C=C/C(=O)NCCCCC3CCN(CC3)C(=O)c4ccccc4)c2"
IS1 SMILES CACTVS 3.341 "OC[CH]1O[CH]([CH](O)[CH]1O)[n+]2cccc(C=CC(=O)NCCCCC3CCN(CC3)C(=O)c4ccccc4)c2"
IS1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(=O)N2CCC(CC2)CCCCNC(=O)\C=C\c3ccc[n+](c3)[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O"
IS1 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(=O)N2CCC(CC2)CCCCNC(=O)C=Cc3ccc[n+](c3)C4C(C(C(O4)CO)O)O"
IS1 InChI InChI 1.03 "InChI=1S/C29H37N3O6/c33-20-24-26(35)27(36)29(38-24)32-16-6-8-22(19-32)11-12-25(34)30-15-5-4-7-21-13-17-31(18-14-21)28(37)23-9-2-1-3-10-23/h1-3,6,8-12,16,19,21,24,26-27,29,33,35-36H,4-5,7,13-15,17-18,20H2/p+1/b12-11+/t24-,26-,27-,29-/m1/s1"
IS1 InChIKey InChI 1.03 NQSRPUVKZPKDIV-NNOPKNNOSA-O
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
IS1 "SYSTEMATIC NAME" ACDLabs 10.04 "3-[(1E)-3-oxo-3-({4-[1-(phenylcarbonyl)piperidin-4-yl]butyl}amino)prop-1-en-1-yl]-1-beta-D-ribofuranosylpyridinium"
IS1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(E)-3-[1-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyridin-1-ium-3-yl]-N-[4-[1-(phenylcarbonyl)piperidin-4-yl]butyl]prop-2-enamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
IS1 "Create component" 2009-02-22 PDBJ
IS1 "Modify aromatic_flag" 2011-06-04 RCSB
IS1 "Modify descriptor" 2011-06-04 RCSB
IS1 "Modify synonyms" 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id IS1
_pdbx_chem_comp_synonyms.name "3-((E)-3-(4-(1-benzoylpiperidin-4-yl)butylamino)-3-oxoprop-1-enyl)-1-((2R,3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)pyridinium"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
##