data_ITH # _chem_comp.id ITH _chem_comp.name "4-[(2S,3R)-3-[3,5-bis(oxidanylidene)piperazin-1-ium-1-yl]butan-2-yl]piperazin-4-ium-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H20 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2022-04-11 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 284.312 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ITH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZBG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ITH C1 C1 C 0 1 N N N -14.184 -23.502 -1.103 -1.305 -3.006 -0.393 C1 ITH 1 ITH C2 C2 C 0 1 N N S -14.116 -24.876 -0.487 -0.683 -1.649 -0.058 C2 ITH 2 ITH C3 C3 C 0 1 N N R -14.958 -25.114 0.832 0.500 -1.385 -0.992 C3 ITH 3 ITH C4 C4 C 0 1 N N N -14.941 -26.587 1.219 -0.008 -0.762 -2.294 C4 ITH 4 ITH N1 N1 N 1 1 N N N -14.677 -24.240 2.007 1.441 -0.464 -0.342 N1 ITH 5 ITH C5 C5 C 0 1 N N N -13.415 -24.455 2.757 2.509 -0.106 -1.286 C5 ITH 6 ITH C6 C6 C 0 1 N N N -13.553 -24.923 4.179 3.497 0.802 -0.603 C6 ITH 7 ITH O1 O1 O 0 1 N N N -12.575 -25.318 4.790 4.111 1.621 -1.252 O1 ITH 8 ITH N2 N2 N 0 1 N N N -14.801 -24.920 4.765 3.704 0.712 0.724 N2 ITH 9 ITH C7 C7 C 0 1 N N N -15.976 -24.631 4.121 3.034 -0.186 1.469 C7 ITH 10 ITH O2 O2 O 0 1 N N N -17.066 -24.965 4.561 3.236 -0.245 2.664 O2 ITH 11 ITH C8 C8 C 0 1 N N N -15.833 -23.846 2.859 2.036 -1.117 0.833 C8 ITH 12 ITH N3 N3 N 1 1 N N N -14.490 -25.787 -1.600 -1.689 -0.592 -0.231 N3 ITH 13 ITH C9 C9 C 0 1 N N N -13.443 -26.689 -2.121 -1.111 0.704 0.148 C9 ITH 14 ITH C10 C10 C 0 1 N N N -12.600 -26.105 -3.205 -2.159 1.778 0.013 C10 ITH 15 ITH O3 O3 O 0 1 N N N -11.505 -26.563 -3.449 -1.826 2.912 -0.256 O3 ITH 16 ITH N4 N4 N 0 1 N N N -13.130 -25.072 -3.933 -3.461 1.487 0.186 N4 ITH 17 ITH C11 C11 C 0 1 N N N -14.316 -24.447 -3.636 -3.858 0.236 0.480 C11 ITH 18 ITH O4 O4 O 0 1 N N N -14.614 -23.360 -4.087 -5.038 -0.001 0.628 O4 ITH 19 ITH C12 C12 C 0 1 N N N -15.227 -25.176 -2.709 -2.850 -0.873 0.626 C12 ITH 20 ITH H1 H1 H 0 1 N N N -13.920 -22.747 -0.347 -0.536 -3.777 -0.356 H1 ITH 21 ITH H2 H2 H 0 1 N N N -13.477 -23.442 -1.944 -2.086 -3.237 0.333 H2 ITH 22 ITH H3 H3 H 0 1 N N N -15.205 -23.314 -1.468 -1.738 -2.970 -1.393 H3 ITH 23 ITH H4 H4 H 0 1 N N N -13.065 -25.073 -0.230 -0.336 -1.653 0.976 H4 ITH 24 ITH H5 H5 H 0 1 N N N -15.998 -24.900 0.544 1.005 -2.326 -1.212 H5 ITH 25 ITH H7 H6 H 0 1 N N N -15.530 -26.732 2.136 0.840 -0.508 -2.930 H7 ITH 26 ITH H8 H7 H 0 1 N N N -15.377 -27.185 0.405 -0.650 -1.475 -2.812 H8 ITH 27 ITH H6 H8 H 0 1 N N N -13.904 -26.908 1.395 -0.576 0.140 -2.067 H6 ITH 28 ITH H19 H9 H 0 1 N Y N -14.478 -23.373 1.551 0.952 0.370 -0.054 H19 ITH 29 ITH H10 H10 H 0 1 N N N -12.827 -25.208 2.213 3.018 -1.011 -1.620 H10 ITH 30 ITH H9 H11 H 0 1 N N N -12.867 -23.501 2.770 2.078 0.407 -2.146 H9 ITH 31 ITH H11 H12 H 0 1 N N N -14.853 -25.147 5.738 4.345 1.303 1.149 H11 ITH 32 ITH H12 H13 H 0 1 N N N -15.715 -22.786 3.127 1.252 -1.356 1.551 H12 ITH 33 ITH H13 H14 H 0 1 N N N -16.753 -23.975 2.269 2.539 -2.033 0.524 H13 ITH 34 ITH H20 H15 H 0 1 N Y N -15.154 -26.408 -1.184 -1.982 -0.561 -1.196 H20 ITH 35 ITH H14 H16 H 0 1 N N N -13.933 -27.591 -2.516 -0.767 0.660 1.182 H14 ITH 36 ITH H15 H17 H 0 1 N N N -12.783 -26.967 -1.286 -0.269 0.933 -0.505 H15 ITH 37 ITH H16 H18 H 0 1 N N N -12.620 -24.753 -4.732 -4.123 2.191 0.098 H16 ITH 38 ITH H18 H19 H 0 1 N N N -15.963 -24.468 -2.301 -3.303 -1.819 0.329 H18 ITH 39 ITH H17 H20 H 0 1 N N N -15.749 -25.966 -3.269 -2.526 -0.936 1.665 H17 ITH 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ITH O4 C11 DOUB N N 1 ITH N4 C11 SING N N 2 ITH N4 C10 SING N N 3 ITH C11 C12 SING N N 4 ITH O3 C10 DOUB N N 5 ITH C10 C9 SING N N 6 ITH C12 N3 SING N N 7 ITH C9 N3 SING N N 8 ITH N3 C2 SING N N 9 ITH C1 C2 SING N N 10 ITH C2 C3 SING N N 11 ITH C3 C4 SING N N 12 ITH C3 N1 SING N N 13 ITH N1 C5 SING N N 14 ITH N1 C8 SING N N 15 ITH C5 C6 SING N N 16 ITH C8 C7 SING N N 17 ITH C7 O2 DOUB N N 18 ITH C7 N2 SING N N 19 ITH C6 N2 SING N N 20 ITH C6 O1 DOUB N N 21 ITH C1 H1 SING N N 22 ITH C1 H2 SING N N 23 ITH C1 H3 SING N N 24 ITH C2 H4 SING N N 25 ITH C3 H5 SING N N 26 ITH C4 H7 SING N N 27 ITH C4 H8 SING N N 28 ITH C4 H6 SING N N 29 ITH N1 H19 SING N N 30 ITH C5 H10 SING N N 31 ITH C5 H9 SING N N 32 ITH N2 H11 SING N N 33 ITH C8 H12 SING N N 34 ITH C8 H13 SING N N 35 ITH N3 H20 SING N N 36 ITH C9 H14 SING N N 37 ITH C9 H15 SING N N 38 ITH N4 H16 SING N N 39 ITH C12 H18 SING N N 40 ITH C12 H17 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ITH InChI InChI 1.06 "InChI=1S/C12H18N4O4/c1-7(15-3-9(17)13-10(18)4-15)8(2)16-5-11(19)14-12(20)6-16/h7-8H,3-6H2,1-2H3,(H,13,17,18)(H,14,19,20)/p+2/t7-,8+" ITH InChIKey InChI 1.06 OBYGAPWKTPDTAS-OCAPTIKFSA-P ITH SMILES_CANONICAL CACTVS 3.385 "C[C@@H]([C@@H](C)[NH+]1CC(=O)NC(=O)C1)[NH+]2CC(=O)NC(=O)C2" ITH SMILES CACTVS 3.385 "C[CH]([CH](C)[NH+]1CC(=O)NC(=O)C1)[NH+]2CC(=O)NC(=O)C2" ITH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@H](C)[NH+]1CC(=O)NC(=O)C1)[NH+]2CC(=O)NC(=O)C2" ITH SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C)[NH+]1CC(=O)NC(=O)C1)[NH+]2CC(=O)NC(=O)C2" # _pdbx_chem_comp_identifier.comp_id ITH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[(2~{S},3~{R})-3-[3,5-bis(oxidanylidene)piperazin-1-ium-1-yl]butan-2-yl]piperazin-4-ium-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ITH "Create component" 2022-04-11 PDBE ITH "Initial release" 2022-05-25 RCSB ITH "Modify descriptor" 2022-08-22 RCSB #