data_IV3 # _chem_comp.id IV3 _chem_comp.name ivosidenib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H22 Cl F3 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-{(1S)-1-(2-chlorophenyl)-2-[(3,3-difluorocyclobutyl)amino]-2-oxoethyl}-1-(4-cyanopyridin-2-yl)-N-(5-fluoropyridin-3-yl)-5-oxo-L-prolinamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-04 _chem_comp.pdbx_modified_date 2024-08-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 582.961 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IV3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8T7O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IV3 N1 N1 N 0 1 N N N N N N 26.033 -10.492 4.431 -0.041 0.764 0.403 N1 IV3 1 IV3 N3 N2 N 0 1 N N N N N N 28.662 -9.945 6.929 -3.695 1.087 0.418 N3 IV3 2 IV3 C4 C1 C 0 1 N N S N N N 25.628 -10.094 3.058 0.970 -0.208 0.827 C4 IV3 3 IV3 C5 C2 C 0 1 Y N N N N N 24.871 -11.164 2.282 0.717 -1.527 0.142 C5 IV3 4 IV3 C6 C3 C 0 1 Y N N N N N 23.513 -11.006 2.013 0.097 -1.556 -1.093 C6 IV3 5 IV3 C7 C4 C 0 1 Y N N N N N 22.801 -11.962 1.305 -0.135 -2.766 -1.721 C7 IV3 6 IV3 C8 C5 C 0 1 Y N N N N N 23.428 -13.095 0.850 0.251 -3.946 -1.114 C8 IV3 7 IV3 C10 C6 C 0 1 Y N N N N N 25.478 -12.325 1.802 1.109 -2.707 0.747 C10 IV3 8 IV3 C13 C7 C 0 1 Y N N N N N 23.654 -13.114 6.590 1.052 3.979 -1.934 C13 IV3 9 IV3 C15 C8 C 0 1 Y N N N N N 25.555 -12.772 5.186 0.500 3.119 0.228 C15 IV3 10 IV3 C17 C9 C 0 1 N N S N N N 27.237 -9.852 6.504 -2.345 1.662 0.442 C17 IV3 11 IV3 C20 C10 C 0 1 N N N N N N 29.089 -8.793 7.541 -4.573 1.875 1.063 C20 IV3 12 IV3 C21 C11 C 0 1 Y N N N N N 29.452 -11.100 6.665 -4.026 -0.118 -0.199 C21 IV3 13 IV3 C22 C12 C 0 1 Y N N N N N 29.434 -13.277 5.937 -3.360 -1.936 -1.461 C22 IV3 14 IV3 C24 C13 C 0 1 Y N N N N N 31.532 -12.225 6.307 -5.644 -1.804 -0.747 C24 IV3 15 IV3 C26 C14 C 0 1 Y N N N N N 30.854 -11.073 6.701 -5.329 -0.594 -0.123 C26 IV3 16 IV3 N5 N3 N 0 1 N N N N N N 34.117 -12.201 6.208 -8.029 -2.753 -0.654 N5 IV3 17 IV3 C25 C15 C 0 1 N N N N N N 32.974 -12.228 6.247 -6.974 -2.333 -0.695 C25 IV3 18 IV3 C23 C16 C 0 1 Y N N N N N 30.810 -13.348 5.921 -4.628 -2.479 -1.434 C23 IV3 19 IV3 N4 N4 N 0 1 Y N N N N N 28.745 -12.187 6.302 -3.097 -0.794 -0.855 N4 IV3 20 IV3 O2 O1 O 0 1 N N N N N N 30.247 -8.407 7.598 -5.757 1.640 1.187 O2 IV3 21 IV3 C19 C17 C 0 1 N N N N N N 27.874 -8.091 8.052 -3.870 3.097 1.612 C19 IV3 22 IV3 C18 C18 C 0 1 N N N N N N 26.787 -8.489 7.068 -2.370 2.725 1.563 C18 IV3 23 IV3 C16 C19 C 0 1 N N N N N N 27.125 -9.884 4.976 -1.330 0.595 0.759 C16 IV3 24 IV3 O1 O2 O 0 1 N N N N N N 27.988 -9.376 4.279 -1.672 -0.417 1.334 O1 IV3 25 IV3 C11 C20 C 0 1 Y N N N N N 25.227 -11.420 5.169 0.333 1.872 -0.366 C11 IV3 26 IV3 C14 C21 C 0 1 Y N N N N N 24.729 -13.598 5.896 0.872 4.187 -0.577 C14 IV3 27 IV3 F2 F1 F 0 1 N N N N N N 24.947 -14.938 5.850 1.056 5.414 -0.043 F2 IV3 28 IV3 N2 N5 N 0 1 Y N N N N N 23.338 -11.816 6.592 0.876 2.785 -2.465 N2 IV3 29 IV3 C12 C22 C 0 1 Y N N N N N 24.113 -10.995 5.882 0.528 1.745 -1.736 C12 IV3 30 IV3 C3 C23 C 0 1 N N N N N N 24.937 -8.719 3.106 2.340 0.296 0.454 C3 IV3 31 IV3 O O3 O 0 1 N N N N N N 24.475 -8.284 4.160 2.473 1.416 0.006 O IV3 32 IV3 N N6 N 0 1 N N N N N N 24.895 -8.034 1.961 3.418 -0.496 0.618 N IV3 33 IV3 C2 C24 C 0 1 N N N N N N 24.362 -6.677 1.861 4.750 -0.005 0.255 C2 IV3 34 IV3 C1 C25 C 0 1 N N N N N N 25.191 -5.544 2.488 5.891 -0.701 1.016 C1 IV3 35 IV3 C27 C26 C 0 1 N N N N N N 24.481 -5.959 0.507 5.316 -0.647 -1.023 C27 IV3 36 IV3 C C27 C 0 1 N N N N N N 25.592 -5.068 1.091 6.676 -0.686 -0.306 C IV3 37 IV3 F1 F2 F 0 1 N N N N N N 26.874 -5.378 0.702 7.400 -1.860 -0.541 F1 IV3 38 IV3 F F3 F 0 1 N N N N N N 25.456 -3.717 0.879 7.440 0.472 -0.491 F IV3 39 IV3 CL CL1 CL 0 0 N N N N N N 27.164 -12.617 2.089 1.893 -2.670 2.296 CL IV3 40 IV3 C9 C28 C 0 1 Y N N N N N 24.775 -13.286 1.095 0.871 -3.918 0.121 C9 IV3 41 IV3 H1 H1 H 0 1 N N N N N N 26.563 -9.932 2.502 0.914 -0.343 1.907 H1 IV3 42 IV3 H2 H2 H 0 1 N N N N N N 23.004 -10.120 2.363 -0.205 -0.635 -1.568 H2 IV3 43 IV3 H3 H3 H 0 1 N N N N N N 21.749 -11.815 1.111 -0.620 -2.788 -2.686 H3 IV3 44 IV3 H4 H4 H 0 1 N N N N N N 22.869 -13.838 0.300 0.066 -4.891 -1.603 H4 IV3 45 IV3 H5 H5 H 0 1 N N N N N N 23.042 -13.803 7.154 1.337 4.807 -2.567 H5 IV3 46 IV3 H6 H6 H 0 1 N N N N N N 26.421 -13.151 4.663 0.352 3.252 1.289 H6 IV3 47 IV3 H7 H7 H 0 1 N N N N N N 26.641 -10.663 6.948 -2.117 2.129 -0.516 H7 IV3 48 IV3 H8 H8 H 0 1 N N N N N N 28.877 -14.153 5.637 -2.570 -2.454 -1.985 H8 IV3 49 IV3 H9 H9 H 0 1 N N N N N N 31.389 -10.191 7.022 -6.086 -0.038 0.410 H9 IV3 50 IV3 H10 H10 H 0 1 N N N N N N 31.314 -14.253 5.616 -4.832 -3.415 -1.933 H10 IV3 51 IV3 H11 H11 H 0 1 N N N N N N 28.022 -7.001 8.053 -4.068 3.966 0.983 H11 IV3 52 IV3 H12 H12 H 0 1 N N N N N N 27.625 -8.428 9.069 -4.185 3.290 2.637 H12 IV3 53 IV3 H13 H13 H 0 1 N N N N N N 26.705 -7.745 6.262 -2.043 2.300 2.512 H13 IV3 54 IV3 H14 H14 H 0 1 N N N N N N 25.818 -8.584 7.580 -1.762 3.589 1.294 H14 IV3 55 IV3 H15 H15 H 0 1 N N N N N N 23.861 -9.945 5.860 0.400 0.781 -2.206 H15 IV3 56 IV3 H16 H16 H 0 1 N N N N N N 25.245 -8.470 1.132 3.312 -1.391 0.975 H16 IV3 57 IV3 H17 H17 H 0 1 N N N N N N 23.324 -6.630 2.223 4.817 1.082 0.265 H17 IV3 58 IV3 H18 H18 H 0 1 N N N N N N 26.034 -5.891 3.104 6.336 -0.083 1.795 H18 IV3 59 IV3 H19 H19 H 0 1 N N N N N N 24.597 -4.815 3.058 5.637 -1.702 1.363 H19 IV3 60 IV3 H20 H20 H 0 1 N N N N N N 23.576 -5.412 0.206 4.905 -1.635 -1.234 H20 IV3 61 IV3 H21 H21 H 0 1 N N N N N N 24.810 -6.606 -0.319 5.297 0.014 -1.889 H21 IV3 62 IV3 H22 H22 H 0 1 N N N N N N 25.274 -14.175 0.739 1.173 -4.840 0.595 H22 IV3 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IV3 C27 C SING N N 1 IV3 C27 C2 SING N N 2 IV3 F1 C SING N N 3 IV3 C8 C9 DOUB Y N 4 IV3 C8 C7 SING Y N 5 IV3 F C SING N N 6 IV3 C C1 SING N N 7 IV3 C9 C10 SING Y N 8 IV3 C7 C6 DOUB Y N 9 IV3 C10 CL SING N N 10 IV3 C10 C5 DOUB Y N 11 IV3 C2 N SING N N 12 IV3 C2 C1 SING N N 13 IV3 N C3 SING N N 14 IV3 C6 C5 SING Y N 15 IV3 C5 C4 SING N N 16 IV3 C4 C3 SING N N 17 IV3 C4 N1 SING N N 18 IV3 C3 O DOUB N N 19 IV3 O1 C16 DOUB N N 20 IV3 N1 C16 SING N N 21 IV3 N1 C11 SING N N 22 IV3 C16 C17 SING N N 23 IV3 C11 C15 DOUB Y N 24 IV3 C11 C12 SING Y N 25 IV3 C15 C14 SING Y N 26 IV3 F2 C14 SING N N 27 IV3 C12 N2 DOUB Y N 28 IV3 C14 C13 DOUB Y N 29 IV3 C23 C22 DOUB Y N 30 IV3 C23 C24 SING Y N 31 IV3 C22 N4 SING Y N 32 IV3 N5 C25 TRIP N N 33 IV3 C25 C24 SING N N 34 IV3 N4 C21 DOUB Y N 35 IV3 C24 C26 DOUB Y N 36 IV3 C17 N3 SING N N 37 IV3 C17 C18 SING N N 38 IV3 C13 N2 SING Y N 39 IV3 C21 C26 SING Y N 40 IV3 C21 N3 SING N N 41 IV3 N3 C20 SING N N 42 IV3 C18 C19 SING N N 43 IV3 C20 O2 DOUB N N 44 IV3 C20 C19 SING N N 45 IV3 C4 H1 SING N N 46 IV3 C6 H2 SING N N 47 IV3 C7 H3 SING N N 48 IV3 C8 H4 SING N N 49 IV3 C13 H5 SING N N 50 IV3 C15 H6 SING N N 51 IV3 C17 H7 SING N N 52 IV3 C22 H8 SING N N 53 IV3 C26 H9 SING N N 54 IV3 C23 H10 SING N N 55 IV3 C19 H11 SING N N 56 IV3 C19 H12 SING N N 57 IV3 C18 H13 SING N N 58 IV3 C18 H14 SING N N 59 IV3 C12 H15 SING N N 60 IV3 N H16 SING N N 61 IV3 C2 H17 SING N N 62 IV3 C1 H18 SING N N 63 IV3 C1 H19 SING N N 64 IV3 C27 H20 SING N N 65 IV3 C27 H21 SING N N 66 IV3 C9 H22 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IV3 SMILES ACDLabs 12.01 "FC1(F)CC(C1)NC(=O)C(c1ccccc1Cl)N(c1cc(F)cnc1)C(=O)C1CCC(=O)N1c1nccc(C#N)c1" IV3 InChI InChI 1.06 "InChI=1S/C28H22ClF3N6O3/c29-21-4-2-1-3-20(21)25(26(40)36-18-11-28(31,32)12-18)37(19-10-17(30)14-34-15-19)27(41)22-5-6-24(39)38(22)23-9-16(13-33)7-8-35-23/h1-4,7-10,14-15,18,22,25H,5-6,11-12H2,(H,36,40)/t22-,25-/m0/s1" IV3 InChIKey InChI 1.06 WIJZXSAJMHAVGX-DHLKQENFSA-N IV3 SMILES_CANONICAL CACTVS 3.385 "Fc1cncc(c1)N([C@H](C(=O)NC2CC(F)(F)C2)c3ccccc3Cl)C(=O)[C@@H]4CCC(=O)N4c5cc(ccn5)C#N" IV3 SMILES CACTVS 3.385 "Fc1cncc(c1)N([CH](C(=O)NC2CC(F)(F)C2)c3ccccc3Cl)C(=O)[CH]4CCC(=O)N4c5cc(ccn5)C#N" IV3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)[C@@H](C(=O)NC2CC(C2)(F)F)N(c3cc(cnc3)F)C(=O)[C@@H]4CCC(=O)N4c5cc(ccn5)C#N)Cl" IV3 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)C(C(=O)NC2CC(C2)(F)F)N(c3cc(cnc3)F)C(=O)C4CCC(=O)N4c5cc(ccn5)C#N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IV3 "SYSTEMATIC NAME" ACDLabs 12.01 "N-{(1S)-1-(2-chlorophenyl)-2-[(3,3-difluorocyclobutyl)amino]-2-oxoethyl}-1-(4-cyanopyridin-2-yl)-N-(5-fluoropyridin-3-yl)-5-oxo-L-prolinamide" IV3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-~{N}-[(1~{S})-2-[[3,3-bis(fluoranyl)cyclobutyl]amino]-1-(2-chlorophenyl)-2-oxidanylidene-ethyl]-1-(4-cyanopyridin-2-yl)-~{N}-(5-fluoranylpyridin-3-yl)-5-oxidanylidene-pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IV3 "Create component" 2023-07-04 RCSB IV3 "Initial release" 2024-08-28 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IV3 _pdbx_chem_comp_synonyms.name "N-{(1S)-1-(2-chlorophenyl)-2-[(3,3-difluorocyclobutyl)amino]-2-oxoethyl}-1-(4-cyanopyridin-2-yl)-N-(5-fluoropyridin-3-yl)-5-oxo-L-prolinamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type "systematic name" #