data_IV5 # _chem_comp.id IV5 _chem_comp.name "(1R,3S,5Z)-4-methylidene-5-[(E)-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H50 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-13 _chem_comp.pdbx_modified_date 2022-11-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.737 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IV5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZFG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IV5 C10 C1 C 0 1 Y N N -26.548 17.436 -4.782 -2.026 -2.640 -0.296 C10 IV5 1 IV5 C13 C2 C 0 1 Y N N -28.622 19.190 -4.087 0.500 -2.422 0.835 C13 IV5 2 IV5 C15 C3 C 0 1 Y N N -27.903 17.110 -5.030 -1.168 -1.655 -0.738 C15 IV5 3 IV5 C17 C4 C 0 1 N N N -31.186 16.263 -5.206 2.310 -0.869 -1.336 C17 IV5 4 IV5 C20 C5 C 0 1 N N N -29.732 13.035 -7.003 5.777 -1.820 0.044 C20 IV5 5 IV5 C21 C6 C 0 1 N N N -29.890 11.589 -6.443 7.078 -2.204 -0.663 C21 IV5 6 IV5 C22 C7 C 0 1 N N N -29.740 10.549 -7.586 8.160 -2.487 0.380 C22 IV5 7 IV5 C24 C8 C 0 1 N N N -30.748 10.844 -8.720 9.493 -2.750 -0.325 C24 IV5 8 IV5 C26 C9 C 0 1 N N N -31.355 18.717 -4.930 0.725 0.812 -0.443 C26 IV5 9 IV5 C28 C10 C 0 1 N N N -33.612 19.491 -5.660 1.308 3.123 -0.694 C28 IV5 10 IV5 C01 C11 C 0 1 N N N -23.443 16.973 -11.404 -10.576 -0.702 -0.323 C01 IV5 11 IV5 C02 C12 C 0 1 N N N -23.230 18.305 -10.644 -9.163 -0.472 0.218 C02 IV5 12 IV5 C03 C13 C 0 1 N N N -23.325 19.456 -11.643 -9.113 -0.865 1.696 C03 IV5 13 IV5 C05 C14 C 0 1 N N N -24.361 18.500 -9.570 -8.170 -1.328 -0.570 C05 IV5 14 IV5 C06 C15 C 0 1 N N N -24.722 17.144 -8.893 -6.777 -1.194 0.050 C06 IV5 15 IV5 C07 C16 C 0 1 N N N -25.519 17.353 -7.569 -5.784 -2.049 -0.739 C07 IV5 16 IV5 C08 C17 C 0 1 N N N -25.543 16.072 -6.689 -4.391 -1.916 -0.119 C08 IV5 17 IV5 C09 C18 C 0 1 N N N -25.414 16.430 -5.189 -3.397 -2.771 -0.907 C09 IV5 18 IV5 C11 C19 C 0 1 Y N N -26.229 18.655 -4.192 -1.629 -3.511 0.703 C11 IV5 19 IV5 C12 C20 C 0 1 Y N N -27.273 19.528 -3.847 -0.370 -3.402 1.267 C12 IV5 20 IV5 C14 C21 C 0 1 Y N N -28.963 17.969 -4.673 0.106 -1.538 -0.174 C14 IV5 21 IV5 C16 C22 C 0 1 N N N -30.515 17.669 -4.934 1.028 -0.490 -0.640 C16 IV5 22 IV5 C18 C23 C 0 1 N N N -30.213 15.153 -5.690 3.392 -1.152 -0.293 C18 IV5 23 IV5 C19 C24 C 0 1 N N N -30.858 14.006 -6.521 4.694 -1.536 -0.999 C19 IV5 24 IV5 C23 C25 C 0 1 N N N -28.306 10.669 -8.145 8.304 -1.279 1.308 C23 IV5 25 IV5 C27 C26 C 0 1 N N N -32.869 18.496 -5.183 1.611 1.819 -0.891 C27 IV5 26 IV5 C29 C27 C 0 1 N N N -35.010 19.320 -5.817 2.231 4.232 -1.158 C29 IV5 27 IV5 C30 C28 C 0 1 N N R -35.884 20.670 -5.394 2.386 5.241 -0.015 C30 IV5 28 IV5 C32 C29 C 0 1 N N N -35.410 21.759 -5.926 1.014 5.778 0.392 C32 IV5 29 IV5 C33 C30 C 0 1 N N S -33.870 21.963 -5.336 0.176 4.650 1.003 C33 IV5 30 IV5 C35 C31 C 0 1 N N N -33.040 20.955 -5.821 0.060 3.534 -0.022 C35 IV5 31 IV5 C36 C32 C 0 1 N N N -32.031 21.227 -6.648 -1.108 2.952 -0.299 C36 IV5 32 IV5 O04 O1 O 0 1 N N N -21.974 18.278 -10.008 -8.819 0.908 0.080 O04 IV5 33 IV5 O25 O2 O 0 1 N N N -29.999 9.271 -7.070 7.794 -3.636 1.148 O25 IV5 34 IV5 O31 O3 O 0 1 N N N -35.808 20.774 -3.913 3.211 6.325 -0.448 O31 IV5 35 IV5 O34 O4 O 0 1 N N N -33.387 23.232 -5.686 0.814 4.162 2.184 O34 IV5 36 IV5 H1 H1 H 0 1 N N N -29.402 19.885 -3.814 1.482 -2.339 1.276 H1 IV5 37 IV5 H2 H2 H 0 1 N N N -28.133 16.170 -5.510 -1.479 -0.976 -1.518 H2 IV5 38 IV5 H3 H3 H 0 1 N N N -31.960 16.398 -5.976 2.145 -1.761 -1.940 H3 IV5 39 IV5 H4 H4 H 0 1 N N N -31.654 15.922 -4.271 2.630 -0.048 -1.979 H4 IV5 40 IV5 H5 H5 H 0 1 N N N -29.756 12.989 -8.102 5.456 -2.640 0.686 H5 IV5 41 IV5 H6 H6 H 0 1 N N N -28.761 13.434 -6.674 5.941 -0.928 0.648 H6 IV5 42 IV5 H7 H7 H 0 1 N N N -30.885 11.484 -5.985 6.913 -3.096 -1.268 H7 IV5 43 IV5 H8 H8 H 0 1 N N N -29.115 11.407 -5.683 7.398 -1.384 -1.306 H8 IV5 44 IV5 H9 H9 H 0 1 N N N -31.773 10.761 -8.331 9.390 -3.611 -0.986 H9 IV5 45 IV5 H10 H10 H 0 1 N N N -30.582 11.862 -9.102 9.772 -1.874 -0.911 H10 IV5 46 IV5 H11 H11 H 0 1 N N N -30.605 10.119 -9.535 10.264 -2.951 0.418 H11 IV5 47 IV5 H12 H12 H 0 1 N N N -30.977 19.713 -4.751 -0.193 1.083 0.056 H12 IV5 48 IV5 H13 H13 H 0 1 N N N -23.377 16.133 -10.697 -10.611 -0.423 -1.376 H13 IV5 49 IV5 H14 H14 H 0 1 N N N -24.435 16.976 -11.879 -10.839 -1.755 -0.218 H14 IV5 50 IV5 H15 H15 H 0 1 N N N -22.668 16.864 -12.176 -11.284 -0.093 0.238 H15 IV5 51 IV5 H16 H16 H 0 1 N N N -23.176 20.411 -11.118 -9.376 -1.917 1.802 H16 IV5 52 IV5 H17 H17 H 0 1 N N N -22.550 19.337 -12.414 -8.107 -0.701 2.082 H17 IV5 53 IV5 H18 H18 H 0 1 N N N -24.318 19.449 -12.117 -9.821 -0.255 2.258 H18 IV5 54 IV5 H19 H19 H 0 1 N N N -24.011 19.205 -8.801 -8.483 -2.371 -0.538 H19 IV5 55 IV5 H20 H20 H 0 1 N N N -25.257 18.908 -10.060 -8.140 -0.989 -1.606 H20 IV5 56 IV5 H21 H21 H 0 1 N N N -25.335 16.551 -9.588 -6.464 -0.151 0.018 H21 IV5 57 IV5 H22 H22 H 0 1 N N N -23.793 16.600 -8.667 -6.807 -1.533 1.085 H22 IV5 58 IV5 H23 H23 H 0 1 N N N -25.049 18.167 -6.997 -6.097 -3.093 -0.707 H23 IV5 59 IV5 H24 H24 H 0 1 N N N -26.554 17.631 -7.819 -5.754 -1.711 -1.774 H24 IV5 60 IV5 H25 H25 H 0 1 N N N -26.492 15.541 -6.852 -4.078 -0.872 -0.151 H25 IV5 61 IV5 H26 H26 H 0 1 N N N -24.704 15.421 -6.977 -4.421 -2.255 0.917 H26 IV5 62 IV5 H27 H27 H 0 1 N N N -25.505 15.514 -4.586 -3.368 -2.432 -1.943 H27 IV5 63 IV5 H28 H28 H 0 1 N N N -24.433 16.893 -5.007 -3.711 -3.815 -0.875 H28 IV5 64 IV5 H29 H29 H 0 1 N N N -25.200 18.924 -4.003 -2.306 -4.280 1.045 H29 IV5 65 IV5 H30 H30 H 0 1 N N N -27.039 20.477 -3.389 -0.067 -4.086 2.046 H30 IV5 66 IV5 H31 H31 H 0 1 N N N -29.743 14.704 -4.802 3.557 -0.260 0.312 H31 IV5 67 IV5 H32 H32 H 0 1 N N N -29.441 15.628 -6.313 3.072 -1.972 0.350 H32 IV5 68 IV5 H33 H33 H 0 1 N N N -31.379 14.429 -7.393 5.014 -0.716 -1.642 H33 IV5 69 IV5 H34 H34 H 0 1 N N N -31.577 13.456 -5.896 4.529 -2.428 -1.604 H34 IV5 70 IV5 H35 H35 H 0 1 N N N -27.581 10.461 -7.344 9.075 -1.481 2.051 H35 IV5 71 IV5 H36 H36 H 0 1 N N N -28.169 9.944 -8.961 8.584 -0.403 0.722 H36 IV5 72 IV5 H37 H37 H 0 1 N N N -28.146 11.688 -8.528 7.355 -1.092 1.810 H37 IV5 73 IV5 H38 H38 H 0 1 N N N -33.319 17.537 -4.973 2.530 1.548 -1.390 H38 IV5 74 IV5 H39 H39 H 0 1 N N N -35.218 19.085 -6.871 3.204 3.816 -1.416 H39 IV5 75 IV5 H40 H40 H 0 1 N N N -35.333 18.481 -5.183 1.800 4.727 -2.029 H40 IV5 76 IV5 H41 H41 H 0 1 N N N -36.927 20.486 -5.690 2.851 4.751 0.840 H41 IV5 77 IV5 H42 H42 H 0 1 N N N -35.384 21.663 -7.022 1.140 6.574 1.126 H42 IV5 78 IV5 H43 H43 H 0 1 N N N -36.037 22.619 -5.648 0.504 6.174 -0.487 H43 IV5 79 IV5 H44 H44 H 0 1 N N N -33.944 21.887 -4.241 -0.818 5.024 1.250 H44 IV5 80 IV5 H45 H45 H 0 1 N N N -31.844 22.245 -6.955 -1.156 2.159 -1.031 H45 IV5 81 IV5 H46 H46 H 0 1 N N N -31.400 20.429 -7.011 -2.006 3.273 0.208 H46 IV5 82 IV5 H47 H47 H 0 1 N N N -21.945 17.554 -9.394 -9.408 1.510 0.555 H47 IV5 83 IV5 H48 H48 H 0 1 N N N -29.384 9.080 -6.372 7.685 -4.441 0.623 H48 IV5 84 IV5 H49 H49 H 0 1 N N N -36.153 19.980 -3.521 4.101 6.058 -0.717 H49 IV5 85 IV5 H50 H50 H 0 1 N N N -32.507 23.341 -5.346 0.335 3.445 2.622 H50 IV5 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IV5 C03 C02 SING N N 1 IV5 C01 C02 SING N N 2 IV5 C02 O04 SING N N 3 IV5 C02 C05 SING N N 4 IV5 C05 C06 SING N N 5 IV5 C06 C07 SING N N 6 IV5 C24 C22 SING N N 7 IV5 C23 C22 SING N N 8 IV5 C22 O25 SING N N 9 IV5 C22 C21 SING N N 10 IV5 C07 C08 SING N N 11 IV5 C20 C19 SING N N 12 IV5 C20 C21 SING N N 13 IV5 C08 C09 SING N N 14 IV5 C36 C35 DOUB N N 15 IV5 C19 C18 SING N N 16 IV5 C32 C30 SING N N 17 IV5 C32 C33 SING N N 18 IV5 C35 C28 SING N N 19 IV5 C35 C33 SING N N 20 IV5 C29 C28 SING N N 21 IV5 C29 C30 SING N N 22 IV5 C18 C17 SING N N 23 IV5 O34 C33 SING N N 24 IV5 C28 C27 DOUB N Z 25 IV5 C30 O31 SING N N 26 IV5 C17 C16 SING N N 27 IV5 C09 C10 SING N N 28 IV5 C27 C26 SING N N 29 IV5 C15 C10 DOUB Y N 30 IV5 C15 C14 SING Y N 31 IV5 C16 C26 DOUB N E 32 IV5 C16 C14 SING N N 33 IV5 C10 C11 SING Y N 34 IV5 C14 C13 DOUB Y N 35 IV5 C11 C12 DOUB Y N 36 IV5 C13 C12 SING Y N 37 IV5 C13 H1 SING N N 38 IV5 C15 H2 SING N N 39 IV5 C17 H3 SING N N 40 IV5 C17 H4 SING N N 41 IV5 C20 H5 SING N N 42 IV5 C20 H6 SING N N 43 IV5 C21 H7 SING N N 44 IV5 C21 H8 SING N N 45 IV5 C24 H9 SING N N 46 IV5 C24 H10 SING N N 47 IV5 C24 H11 SING N N 48 IV5 C26 H12 SING N N 49 IV5 C01 H13 SING N N 50 IV5 C01 H14 SING N N 51 IV5 C01 H15 SING N N 52 IV5 C03 H16 SING N N 53 IV5 C03 H17 SING N N 54 IV5 C03 H18 SING N N 55 IV5 C05 H19 SING N N 56 IV5 C05 H20 SING N N 57 IV5 C06 H21 SING N N 58 IV5 C06 H22 SING N N 59 IV5 C07 H23 SING N N 60 IV5 C07 H24 SING N N 61 IV5 C08 H25 SING N N 62 IV5 C08 H26 SING N N 63 IV5 C09 H27 SING N N 64 IV5 C09 H28 SING N N 65 IV5 C11 H29 SING N N 66 IV5 C12 H30 SING N N 67 IV5 C18 H31 SING N N 68 IV5 C18 H32 SING N N 69 IV5 C19 H33 SING N N 70 IV5 C19 H34 SING N N 71 IV5 C23 H35 SING N N 72 IV5 C23 H36 SING N N 73 IV5 C23 H37 SING N N 74 IV5 C27 H38 SING N N 75 IV5 C29 H39 SING N N 76 IV5 C29 H40 SING N N 77 IV5 C30 H41 SING N N 78 IV5 C32 H42 SING N N 79 IV5 C32 H43 SING N N 80 IV5 C33 H44 SING N N 81 IV5 C36 H45 SING N N 82 IV5 C36 H46 SING N N 83 IV5 O04 H47 SING N N 84 IV5 O25 H48 SING N N 85 IV5 O31 H49 SING N N 86 IV5 O34 H50 SING N N 87 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IV5 InChI InChI 1.06 "InChI=1S/C32H50O4/c1-24-27(22-29(33)23-30(24)34)18-17-26(15-9-7-11-20-32(4,5)36)28-16-12-14-25(21-28)13-8-6-10-19-31(2,3)35/h12,14,16-18,21,29-30,33-36H,1,6-11,13,15,19-20,22-23H2,2-5H3/b26-17+,27-18-/t29-,30+/m1/s1" IV5 InChIKey InChI 1.06 SQUUCPJJDWEFCT-WWCFBHCMSA-N IV5 SMILES_CANONICAL CACTVS 3.385 "CC(C)(O)CCCCCc1cccc(c1)C(/CCCCCC(C)(C)O)=C/C=C2/C[C@@H](O)C[C@H](O)C2=C" IV5 SMILES CACTVS 3.385 "CC(C)(O)CCCCCc1cccc(c1)C(CCCCCC(C)(C)O)=CC=C2C[CH](O)C[CH](O)C2=C" IV5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(CCCCCc1cccc(c1)/C(=C/C=C\2/C[C@H](C[C@@H](C2=C)O)O)/CCCCCC(C)(C)O)O" IV5 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(CCCCCc1cccc(c1)C(=CC=C2CC(CC(C2=C)O)O)CCCCCC(C)(C)O)O" # _pdbx_chem_comp_identifier.comp_id IV5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1~{R},3~{S},5~{Z})-4-methylidene-5-[(~{E})-9-methyl-3-[3-(6-methyl-6-oxidanyl-heptyl)phenyl]-9-oxidanyl-dec-2-enylidene]cyclohexane-1,3-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IV5 "Create component" 2022-04-13 PDBE IV5 "Modify descriptor" 2022-08-22 RCSB IV5 "Initial release" 2022-11-23 RCSB #