data_IVW # _chem_comp.id IVW _chem_comp.name "8-(1~{H}-benzimidazol-2-ylmethyl)-3-cyclopropyl-7-(phenylmethyl)purine-2,6-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H20 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-14 _chem_comp.pdbx_modified_date 2022-09-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.444 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IVW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZIJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IVW C4 C1 C 0 1 Y N N -19.528 10.186 -17.522 1.285 1.504 0.298 C4 IVW 1 IVW C5 C2 C 0 1 Y N N -20.113 9.052 -17.102 1.612 0.482 -0.584 C5 IVW 2 IVW C6 C3 C 0 1 N N N -21.409 8.829 -17.345 2.636 0.694 -1.533 C6 IVW 3 IVW C8 C4 C 0 1 Y N N -18.048 9.007 -16.529 -0.004 -0.175 0.743 C8 IVW 4 IVW N1 N1 N 0 1 N N N -22.137 9.762 -18.029 3.273 1.884 -1.560 N1 IVW 5 IVW N3 N2 N 0 1 N N N -20.219 11.131 -18.187 1.972 2.704 0.216 N3 IVW 6 IVW CAH C5 C 0 1 Y N N -19.659 4.630 -16.312 3.023 -2.865 -0.602 CAH IVW 7 IVW CAD C6 C 0 1 Y N N -19.714 3.567 -17.212 3.888 -3.729 0.042 CAD IVW 8 IVW CAC C7 C 0 1 Y N N -19.484 3.800 -18.565 3.418 -4.556 1.046 CAC IVW 9 IVW CAE C8 C 0 1 Y N N -19.206 5.094 -19.009 2.084 -4.518 1.405 CAE IVW 10 IVW CAI C9 C 0 1 Y N N -19.150 6.159 -18.110 1.219 -3.652 0.761 CAI IVW 11 IVW CAT C10 C 0 1 Y N N -19.377 5.929 -16.756 1.689 -2.822 -0.239 CAT IVW 12 IVW CAO C11 C 0 1 N N N -19.333 6.972 -15.825 0.747 -1.880 -0.942 CAO IVW 13 IVW N7 N3 N 0 1 Y N N -19.177 8.312 -16.483 0.777 -0.574 -0.280 N7 IVW 14 IVW O6 O1 O 0 1 N N N -22.009 7.815 -16.983 2.942 -0.186 -2.317 O6 IVW 15 IVW C2 C12 C 0 1 N N N -21.514 10.922 -18.445 2.945 2.864 -0.700 C2 IVW 16 IVW O2 O2 O 0 1 N N N -22.184 11.741 -19.059 3.538 3.924 -0.757 O2 IVW 17 IVW CBC C13 C 0 1 N N N -19.572 12.401 -18.663 1.641 3.800 1.130 CBC IVW 18 IVW CAL C14 C 0 1 N N N -18.679 13.165 -17.685 0.792 3.464 2.357 CAL IVW 19 IVW CAM C15 C 0 1 N N N -20.071 13.689 -17.967 0.181 4.250 1.195 CAM IVW 20 IVW N9 N4 N 0 1 Y N N -18.244 10.149 -17.162 0.300 1.052 1.079 N9 IVW 21 IVW CAN C16 C 0 1 N N N -16.703 8.589 -15.939 -1.068 -1.016 1.400 CAN IVW 22 IVW CAU C17 C 0 1 Y N N -15.594 8.553 -17.003 -2.406 -0.714 0.775 CAU IVW 23 IVW NAP N5 N 0 1 Y N N -14.291 8.436 -16.732 -3.223 -1.636 0.198 NAP IVW 24 IVW CAY C18 C 0 1 Y N N -13.646 8.439 -17.898 -4.343 -0.967 -0.253 CAY IVW 25 IVW CAJ C19 C 0 1 Y N N -12.337 8.350 -18.171 -5.503 -1.356 -0.909 CAJ IVW 26 IVW CAF C20 C 0 1 Y N N -11.874 8.372 -19.484 -6.457 -0.414 -1.227 CAF IVW 27 IVW CAG C21 C 0 1 Y N N -12.825 8.487 -20.496 -6.266 0.920 -0.895 CAG IVW 28 IVW CAK C22 C 0 1 Y N N -14.177 8.581 -20.157 -5.131 1.322 -0.249 CAK IVW 29 IVW CAZ C23 C 0 1 Y N N -14.559 8.547 -18.878 -4.150 0.384 0.083 CAZ IVW 30 IVW NAR N6 N 0 1 Y N N -15.769 8.616 -18.320 -2.949 0.467 0.712 NAR IVW 31 IVW H1 H1 H 0 1 N N N -23.105 9.607 -18.225 3.977 2.034 -2.210 H1 IVW 32 IVW H2 H2 H 0 1 N N N -19.836 4.451 -15.262 3.389 -2.219 -1.387 H2 IVW 33 IVW H3 H3 H 0 1 N N N -19.934 2.569 -16.862 4.930 -3.759 -0.238 H3 IVW 34 IVW H4 H4 H 0 1 N N N -19.521 2.982 -19.269 4.094 -5.231 1.549 H4 IVW 35 IVW H5 H5 H 0 1 N N N -19.032 5.272 -20.060 1.717 -5.164 2.189 H5 IVW 36 IVW H6 H6 H 0 1 N N N -18.932 7.156 -18.462 0.176 -3.623 1.041 H6 IVW 37 IVW H7 H7 H 0 1 N N N -20.267 6.969 -15.245 1.054 -1.767 -1.982 H7 IVW 38 IVW H8 H8 H 0 1 N N N -18.481 6.808 -15.149 -0.265 -2.283 -0.904 H8 IVW 39 IVW H9 H9 H 0 1 N N N -19.326 12.479 -19.732 2.409 4.566 1.243 H9 IVW 40 IVW H10 H10 H 0 1 N N N -18.447 12.730 -16.702 0.478 2.428 2.484 H10 IVW 41 IVW H11 H11 H 0 1 N N N -17.802 13.713 -18.059 1.000 4.009 3.278 H11 IVW 42 IVW H12 H12 H 0 1 N N N -20.204 14.613 -18.549 -0.013 5.311 1.352 H12 IVW 43 IVW H13 H13 H 0 1 N N N -20.849 13.629 -17.192 -0.535 3.731 0.558 H13 IVW 44 IVW H14 H14 H 0 1 N N N -16.805 7.586 -15.498 -0.834 -2.072 1.263 H14 IVW 45 IVW H15 H15 H 0 1 N N N -16.420 9.307 -15.155 -1.106 -0.788 2.465 H15 IVW 46 IVW H16 H16 H 0 1 N N N -13.877 8.360 -15.825 -3.050 -2.587 0.118 H16 IVW 47 IVW H17 H17 H 0 1 N N N -11.630 8.260 -17.360 -5.656 -2.393 -1.170 H17 IVW 48 IVW H18 H18 H 0 1 N N N -10.820 8.303 -19.709 -7.359 -0.715 -1.738 H18 IVW 49 IVW H19 H19 H 0 1 N N N -12.520 8.503 -21.532 -7.021 1.648 -1.150 H19 IVW 50 IVW H20 H20 H 0 1 N N N -14.919 8.682 -20.935 -4.992 2.362 0.004 H20 IVW 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IVW CAG CAK DOUB Y N 1 IVW CAG CAF SING Y N 2 IVW CAK CAZ SING Y N 3 IVW CAF CAJ DOUB Y N 4 IVW O2 C2 DOUB N N 5 IVW CAE CAC DOUB Y N 6 IVW CAE CAI SING Y N 7 IVW CAZ NAR SING Y N 8 IVW CAZ CAY DOUB Y N 9 IVW CBC N3 SING N N 10 IVW CBC CAM SING N N 11 IVW CBC CAL SING N N 12 IVW CAC CAD SING Y N 13 IVW C2 N3 SING N N 14 IVW C2 N1 SING N N 15 IVW NAR CAU DOUB Y N 16 IVW N3 C4 SING N N 17 IVW CAJ CAY SING Y N 18 IVW CAI CAT DOUB Y N 19 IVW N1 C6 SING N N 20 IVW CAM CAL SING N N 21 IVW CAY NAP SING Y N 22 IVW C4 N9 SING Y N 23 IVW C4 C5 DOUB Y N 24 IVW C6 C5 SING N N 25 IVW C6 O6 DOUB N N 26 IVW CAD CAH DOUB Y N 27 IVW N9 C8 DOUB Y N 28 IVW C5 N7 SING Y N 29 IVW CAU NAP SING Y N 30 IVW CAU CAN SING N N 31 IVW CAT CAH SING Y N 32 IVW CAT CAO SING N N 33 IVW C8 N7 SING Y N 34 IVW C8 CAN SING N N 35 IVW N7 CAO SING N N 36 IVW N1 H1 SING N N 37 IVW CAH H2 SING N N 38 IVW CAD H3 SING N N 39 IVW CAC H4 SING N N 40 IVW CAE H5 SING N N 41 IVW CAI H6 SING N N 42 IVW CAO H7 SING N N 43 IVW CAO H8 SING N N 44 IVW CBC H9 SING N N 45 IVW CAL H10 SING N N 46 IVW CAL H11 SING N N 47 IVW CAM H12 SING N N 48 IVW CAM H13 SING N N 49 IVW CAN H14 SING N N 50 IVW CAN H15 SING N N 51 IVW NAP H16 SING N N 52 IVW CAJ H17 SING N N 53 IVW CAF H18 SING N N 54 IVW CAG H19 SING N N 55 IVW CAK H20 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IVW InChI InChI 1.06 "InChI=1S/C23H20N6O2/c30-22-20-21(29(15-10-11-15)23(31)27-22)26-19(28(20)13-14-6-2-1-3-7-14)12-18-24-16-8-4-5-9-17(16)25-18/h1-9,15H,10-13H2,(H,24,25)(H,27,30,31)" IVW InChIKey InChI 1.06 GLUWCNQLKSIYKQ-UHFFFAOYSA-N IVW SMILES_CANONICAL CACTVS 3.385 "O=C1NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccccc5n4)nc2N1C6CC6" IVW SMILES CACTVS 3.385 "O=C1NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccccc5n4)nc2N1C6CC6" IVW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cn2c(nc3c2C(=O)NC(=O)N3C4CC4)Cc5[nH]c6ccccc6n5" IVW SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Cn2c(nc3c2C(=O)NC(=O)N3C4CC4)Cc5[nH]c6ccccc6n5" # _pdbx_chem_comp_identifier.comp_id IVW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(1~{H}-benzimidazol-2-ylmethyl)-3-cyclopropyl-7-(phenylmethyl)purine-2,6-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IVW "Create component" 2022-04-14 PDBE IVW "Modify descriptor" 2022-08-22 RCSB IVW "Initial release" 2022-09-07 RCSB #