data_IVZ # _chem_comp.id IVZ _chem_comp.name "(2~{R})-2-azanyl-5-[[2-[[3-methyl-2,6-bis(oxidanylidene)-7-(phenylmethyl)purin-8-yl]methyl]-1~{H}-benzimidazol-5-yl]amino]-5-oxidanylidene-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H26 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-14 _chem_comp.pdbx_modified_date 2022-09-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.535 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IVZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZIG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IVZ C4 C1 C 0 1 Y N N -19.754 8.371 -17.251 3.854 -1.839 -0.788 C4 IVZ 1 IVZ C5 C2 C 0 1 Y N N -20.384 7.232 -16.898 4.125 -1.227 0.429 C5 IVZ 2 IVZ C6 C3 C 0 1 N N N -21.699 7.066 -17.162 4.703 -1.988 1.468 C6 IVZ 3 IVZ C8 C4 C 0 1 Y N N -18.309 7.136 -16.325 3.237 0.228 -0.949 C8 IVZ 4 IVZ N1 N1 N 0 1 N N N -22.385 8.067 -17.806 4.979 -3.292 1.254 N1 IVZ 5 IVZ N3 N2 N 0 1 N N N -20.408 9.357 -17.863 4.165 -3.180 -0.947 N3 IVZ 6 IVZ O O1 O 0 1 N N N -6.788 0.265 -21.712 -10.120 -1.273 2.310 O IVZ 7 IVZ C C5 C 0 1 N N N -7.201 1.050 -20.842 -9.982 -0.523 1.373 C IVZ 8 IVZ OXT O2 O 0 1 N N N -6.773 1.138 -19.667 -10.678 0.623 1.322 OXT IVZ 9 IVZ CA C6 C 0 1 N N R -8.368 1.959 -21.238 -9.028 -0.875 0.261 CA IVZ 10 IVZ N N3 N 0 1 N N N -8.082 2.571 -22.540 -8.764 -2.320 0.281 N IVZ 11 IVZ CB C7 C 0 1 N N N -8.644 2.910 -20.057 -7.715 -0.114 0.455 CB IVZ 12 IVZ CG C8 C 0 1 N N N -9.099 4.342 -20.386 -6.793 -0.374 -0.738 CG IVZ 13 IVZ CD C9 C 0 1 N N N -10.352 4.580 -19.522 -5.500 0.376 -0.547 CD IVZ 14 IVZ OE1 O3 O 0 1 N N N -10.456 4.002 -18.434 -5.332 1.052 0.447 OE1 IVZ 15 IVZ NE2 N4 N 0 1 N N N -11.280 5.375 -20.110 -4.530 0.296 -1.479 NE2 IVZ 16 IVZ CBB C10 C 0 1 Y N N -12.500 5.641 -19.593 -3.293 0.914 -1.257 CBB IVZ 17 IVZ CAO C11 C 0 1 Y N N -12.836 5.758 -18.240 -2.134 0.315 -1.714 CAO IVZ 18 IVZ CAM C12 C 0 1 Y N N -13.515 5.833 -20.525 -3.237 2.132 -0.581 CAM IVZ 19 IVZ CAN C13 C 0 1 Y N N -14.817 6.110 -20.107 -2.027 2.750 -0.357 CAN IVZ 20 IVZ CBH C14 C 0 1 Y N N -15.090 6.193 -18.804 -0.854 2.158 -0.806 CBH IVZ 21 IVZ NAW N5 N 0 1 Y N N -16.241 6.462 -18.177 0.482 2.509 -0.744 NAW IVZ 22 IVZ CBG C15 C 0 1 Y N N -14.109 6.027 -17.886 -0.901 0.933 -1.492 CBG IVZ 23 IVZ NAT N6 N 0 1 Y N N -14.674 6.167 -16.679 0.379 0.607 -1.809 NAT IVZ 24 IVZ CBC C16 C 0 1 Y N N -15.965 6.436 -16.874 1.187 1.525 -1.365 CBC IVZ 25 IVZ CAR C17 C 0 1 N N N -16.971 6.678 -15.751 2.685 1.507 -1.526 CAR IVZ 26 IVZ N9 N7 N 0 1 Y N N -18.471 8.316 -16.898 3.317 -0.912 -1.586 N9 IVZ 27 IVZ CAA C18 C 0 1 N N N -19.670 10.583 -18.240 3.889 -3.849 -2.221 CAA IVZ 28 IVZ C2 C19 C 0 1 N N N -21.708 9.227 -18.154 4.711 -3.871 0.071 C2 IVZ 29 IVZ O2 O4 O 0 1 N N N -22.300 10.133 -18.733 4.978 -5.047 -0.087 O2 IVZ 30 IVZ O6 O5 O 0 1 N N N -22.340 6.047 -16.871 4.951 -1.475 2.544 O6 IVZ 31 IVZ N7 N8 N 0 1 Y N N -19.462 6.444 -16.316 3.723 0.087 0.299 N7 IVZ 32 IVZ CAS C20 C 0 1 N N N -19.711 5.084 -15.744 3.809 1.130 1.324 CAS IVZ 33 IVZ CBA C21 C 0 1 Y N N -19.652 4.042 -16.697 5.104 1.884 1.167 CBA IVZ 34 IVZ CAK C22 C 0 1 Y N N -19.829 2.729 -16.268 5.132 3.069 0.454 CAK IVZ 35 IVZ CAI C23 C 0 1 Y N N -19.777 1.670 -17.174 6.320 3.760 0.309 CAI IVZ 36 IVZ CAH C24 C 0 1 Y N N -19.550 1.928 -18.522 7.480 3.267 0.876 CAH IVZ 37 IVZ CAJ C25 C 0 1 Y N N -19.383 3.236 -18.961 7.452 2.083 1.589 CAJ IVZ 38 IVZ CAL C26 C 0 1 Y N N -19.436 4.291 -18.050 6.263 1.394 1.739 CAL IVZ 39 IVZ H1 H1 H 0 1 N N N -23.356 7.961 -18.020 5.377 -3.819 1.965 H1 IVZ 40 IVZ H2 H2 H 0 1 N N N -6.075 0.507 -19.536 -11.278 0.805 2.059 H2 IVZ 41 IVZ H3 H3 H 0 1 N N N -9.255 1.319 -21.351 -9.469 -0.600 -0.697 H3 IVZ 42 IVZ H4 H4 H 0 1 N N N -8.841 3.166 -22.803 -8.177 -2.592 -0.494 H4 IVZ 43 IVZ H5 H5 H 0 1 N N N -7.242 3.111 -22.477 -8.354 -2.601 1.160 H5 IVZ 44 IVZ H7 H7 H 0 1 N N N -9.429 2.449 -19.440 -7.922 0.954 0.529 H7 IVZ 45 IVZ H8 H8 H 0 1 N N N -7.716 2.986 -19.472 -7.230 -0.454 1.370 H8 IVZ 46 IVZ H9 H9 H 0 1 N N N -8.311 5.065 -20.129 -6.587 -1.441 -0.812 H9 IVZ 47 IVZ H10 H10 H 0 1 N N N -9.345 4.432 -21.454 -7.279 -0.034 -1.653 H10 IVZ 48 IVZ H11 H11 H 0 1 N N N -11.045 5.794 -20.987 -4.689 -0.190 -2.303 H11 IVZ 49 IVZ H12 H12 H 0 1 N N N -12.078 5.633 -17.481 -2.182 -0.627 -2.241 H12 IVZ 50 IVZ H13 H13 H 0 1 N N N -13.293 5.767 -21.580 -4.149 2.593 -0.232 H13 IVZ 51 IVZ H14 H14 H 0 1 N N N -15.601 6.257 -20.836 -1.991 3.693 0.167 H14 IVZ 52 IVZ H15 H15 H 0 1 N N N -17.128 6.645 -18.600 0.849 3.308 -0.335 H15 IVZ 53 IVZ H17 H17 H 0 1 N N N -17.118 5.744 -15.189 3.118 2.359 -1.001 H17 IVZ 54 IVZ H18 H18 H 0 1 N N N -16.581 7.454 -15.076 2.938 1.567 -2.585 H18 IVZ 55 IVZ H19 H19 H 0 1 N N N -18.623 10.496 -17.915 4.757 -3.758 -2.874 H19 IVZ 56 IVZ H20 H20 H 0 1 N N N -19.706 10.711 -19.332 3.680 -4.903 -2.040 H20 IVZ 57 IVZ H21 H21 H 0 1 N N N -20.133 11.454 -17.753 3.026 -3.383 -2.696 H21 IVZ 58 IVZ H22 H22 H 0 1 N N N -20.711 5.079 -15.286 2.971 1.819 1.213 H22 IVZ 59 IVZ H23 H23 H 0 1 N N N -18.953 4.889 -14.971 3.773 0.672 2.313 H23 IVZ 60 IVZ H24 H24 H 0 1 N N N -20.009 2.529 -15.222 4.225 3.454 0.011 H24 IVZ 61 IVZ H25 H25 H 0 1 N N N -19.912 0.655 -16.831 6.342 4.685 -0.247 H25 IVZ 62 IVZ H26 H26 H 0 1 N N N -19.504 1.112 -19.228 8.409 3.807 0.763 H26 IVZ 63 IVZ H27 H27 H 0 1 N N N -19.212 3.436 -20.008 8.359 1.697 2.031 H27 IVZ 64 IVZ H28 H28 H 0 1 N N N -19.309 5.306 -18.396 6.241 0.469 2.295 H28 IVZ 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IVZ N CA SING N N 1 IVZ O C DOUB N N 2 IVZ CA C SING N N 3 IVZ CA CB SING N N 4 IVZ C OXT SING N N 5 IVZ CAM CAN DOUB Y N 6 IVZ CAM CBB SING Y N 7 IVZ CG CB SING N N 8 IVZ CG CD SING N N 9 IVZ NE2 CBB SING N N 10 IVZ NE2 CD SING N N 11 IVZ CAN CBH SING Y N 12 IVZ CBB CAO DOUB Y N 13 IVZ CD OE1 DOUB N N 14 IVZ CAJ CAH DOUB Y N 15 IVZ CAJ CAL SING Y N 16 IVZ CBH NAW SING Y N 17 IVZ CBH CBG DOUB Y N 18 IVZ O2 C2 DOUB N N 19 IVZ CAH CAI SING Y N 20 IVZ CAO CBG SING Y N 21 IVZ CAA N3 SING N N 22 IVZ NAW CBC SING Y N 23 IVZ C2 N3 SING N N 24 IVZ C2 N1 SING N N 25 IVZ CAL CBA DOUB Y N 26 IVZ CBG NAT SING Y N 27 IVZ N3 C4 SING N N 28 IVZ N1 C6 SING N N 29 IVZ C4 C5 DOUB Y N 30 IVZ C4 N9 SING Y N 31 IVZ CAI CAK DOUB Y N 32 IVZ C6 C5 SING N N 33 IVZ C6 O6 DOUB N N 34 IVZ C5 N7 SING Y N 35 IVZ N9 C8 DOUB Y N 36 IVZ CBC NAT DOUB Y N 37 IVZ CBC CAR SING N N 38 IVZ CBA CAK SING Y N 39 IVZ CBA CAS SING N N 40 IVZ C8 N7 SING Y N 41 IVZ C8 CAR SING N N 42 IVZ N7 CAS SING N N 43 IVZ N1 H1 SING N N 44 IVZ OXT H2 SING N N 45 IVZ CA H3 SING N N 46 IVZ N H4 SING N N 47 IVZ N H5 SING N N 48 IVZ CB H7 SING N N 49 IVZ CB H8 SING N N 50 IVZ CG H9 SING N N 51 IVZ CG H10 SING N N 52 IVZ NE2 H11 SING N N 53 IVZ CAO H12 SING N N 54 IVZ CAM H13 SING N N 55 IVZ CAN H14 SING N N 56 IVZ NAW H15 SING N N 57 IVZ CAR H17 SING N N 58 IVZ CAR H18 SING N N 59 IVZ CAA H19 SING N N 60 IVZ CAA H20 SING N N 61 IVZ CAA H21 SING N N 62 IVZ CAS H22 SING N N 63 IVZ CAS H23 SING N N 64 IVZ CAK H24 SING N N 65 IVZ CAI H25 SING N N 66 IVZ CAH H26 SING N N 67 IVZ CAJ H27 SING N N 68 IVZ CAL H28 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IVZ InChI InChI 1.06 "InChI=1S/C26H26N8O5/c1-33-23-22(24(36)32-26(33)39)34(13-14-5-3-2-4-6-14)20(31-23)12-19-29-17-9-7-15(11-18(17)30-19)28-21(35)10-8-16(27)25(37)38/h2-7,9,11,16H,8,10,12-13,27H2,1H3,(H,28,35)(H,29,30)(H,37,38)(H,32,36,39)/t16-/m1/s1" IVZ InChIKey InChI 1.06 YQQGCBNTUKQEBJ-MRXNPFEDSA-N IVZ SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccc(NC(=O)CC[C@@H](N)C(O)=O)cc5n4)nc12" IVZ SMILES CACTVS 3.385 "CN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Cc4[nH]c5ccc(NC(=O)CC[CH](N)C(O)=O)cc5n4)nc12" IVZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)Cc3[nH]c4ccc(cc4n3)NC(=O)CC[C@H](C(=O)O)N)Cc5ccccc5)C(=O)NC1=O" IVZ SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)Cc3[nH]c4ccc(cc4n3)NC(=O)CCC(C(=O)O)N)Cc5ccccc5)C(=O)NC1=O" # _pdbx_chem_comp_identifier.comp_id IVZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-5-[[2-[[3-methyl-2,6-bis(oxidanylidene)-7-(phenylmethyl)purin-8-yl]methyl]-1~{H}-benzimidazol-5-yl]amino]-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IVZ "Create component" 2022-04-14 PDBE IVZ "Modify descriptor" 2022-08-22 RCSB IVZ "Initial release" 2022-09-07 RCSB #