data_IWA # _chem_comp.id IWA _chem_comp.name "(2R)-2-azanyl-5-[[2-[3-methyl-2,6-bis(oxidanylidene)-7-(phenylmethyl)purin-8-yl]sulfanyl-3H-benzimidazol-5-yl]amino]-5-oxidanylidene-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H24 N8 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-14 _chem_comp.pdbx_modified_date 2022-09-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 548.574 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IWA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZIF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IWA C4 C1 C 0 1 Y N N -20.033 8.307 -17.527 -4.073 -1.506 0.020 C4 IWA 1 IWA C5 C2 C 0 1 Y N N -20.576 7.133 -17.134 -5.068 -0.609 -0.353 C5 IWA 2 IWA C6 C3 C 0 1 N N N -21.841 6.800 -17.467 -6.416 -0.956 -0.154 C6 IWA 3 IWA C8 C4 C 0 1 Y N N -18.558 7.273 -16.383 -3.085 0.244 -0.800 C8 IWA 4 IWA N1 N1 N 0 1 N N N -22.581 7.675 -18.249 -6.716 -2.152 0.394 N1 IWA 5 IWA N3 N2 N 0 1 N N N -20.734 9.170 -18.268 -4.444 -2.717 0.582 N3 IWA 6 IWA N N3 N 0 1 N N N -8.077 2.680 -22.439 9.898 -0.274 -1.112 N IWA 7 IWA CA C5 C 0 1 N N R -8.371 1.936 -21.209 9.512 0.094 0.257 CA IWA 8 IWA CAA C6 C 0 1 N N N -20.136 10.458 -18.705 -3.417 -3.682 0.985 CAA IWA 9 IWA CAH C7 C 0 1 Y N N -19.705 1.936 -18.491 -5.545 4.555 1.751 CAH IWA 10 IWA CAI C8 C 0 1 Y N N -20.060 1.726 -17.159 -6.551 3.649 1.472 CAI IWA 11 IWA CAJ C9 C 0 1 Y N N -19.377 3.219 -18.923 -4.380 4.546 1.008 CAJ IWA 12 IWA CAK C10 C 0 1 Y N N -20.088 2.799 -16.262 -6.389 2.729 0.453 CAK IWA 13 IWA CAL C11 C 0 1 Y N N -19.402 4.287 -18.024 -4.220 3.629 -0.015 CAL IWA 14 IWA CAM C12 C 0 1 Y N N -13.631 5.693 -20.590 2.725 -2.662 0.325 CAM IWA 15 IWA CAN C13 C 0 1 Y N N -14.911 6.025 -20.145 1.372 -2.478 0.285 CAN IWA 16 IWA CAO C14 C 0 1 Y N N -12.890 5.674 -18.330 3.083 -0.493 -0.662 CAO IWA 17 IWA CAR C15 C 0 1 N N N -19.796 5.138 -15.761 -5.047 1.715 -1.401 CAR IWA 18 IWA C C16 C 0 1 N N N -7.191 1.016 -20.842 10.207 1.373 0.647 C IWA 19 IWA O O1 O 0 1 N N N -6.744 0.283 -21.747 10.643 2.109 -0.207 O IWA 20 IWA NAS N4 N 0 1 Y N N -14.667 6.206 -16.742 0.905 0.739 -1.150 NAS IWA 21 IWA NAV N5 N 0 1 Y N N -16.280 6.499 -18.183 -0.425 -0.832 -0.400 NAV IWA 22 IWA SAX S1 S 0 1 N N N -17.022 6.895 -15.542 -1.807 1.334 -1.332 SAX IWA 23 IWA CB C17 C 0 1 N N N -8.677 2.820 -19.997 7.997 0.295 0.323 CB IWA 24 IWA CBA C18 C 0 1 Y N N -19.761 4.082 -16.690 -5.221 2.715 -0.286 CBA IWA 25 IWA CBB C19 C 0 1 Y N N -12.594 5.500 -19.685 3.588 -1.676 -0.145 CBB IWA 26 IWA CBC C20 C 0 1 Y N N -15.957 6.521 -16.891 -0.391 0.361 -0.938 CBC IWA 27 IWA CBG C21 C 0 1 Y N N -14.152 5.997 -17.953 1.711 -0.296 -0.709 CBG IWA 28 IWA CBH C22 C 0 1 Y N N -15.151 6.173 -18.841 0.843 -1.293 -0.232 CBH IWA 29 IWA CG C23 C 0 1 N N N -9.162 4.224 -20.360 7.294 -1.036 0.049 CG IWA 30 IWA CD C24 C 0 1 N N N -10.447 4.455 -19.541 5.801 -0.838 0.115 CD IWA 31 IWA NE2 N6 N 0 1 N N N -11.378 5.192 -20.191 4.973 -1.880 -0.096 NE2 IWA 32 IWA OE1 O2 O 0 1 N N N -10.571 3.921 -18.432 5.345 0.260 0.357 OE1 IWA 33 IWA OXT O3 O 0 1 N N N -6.806 1.030 -19.649 10.340 1.696 1.943 OXT IWA 34 IWA C2 C25 C 0 1 N N N -21.990 8.881 -18.631 -5.747 -3.012 0.751 C2 IWA 35 IWA O2 O4 O 0 1 N N N -22.608 9.681 -19.321 -6.054 -4.079 1.247 O2 IWA 36 IWA O6 O5 O 0 1 N N N -22.381 5.734 -17.123 -7.305 -0.185 -0.472 O6 IWA 37 IWA N7 N7 N 0 1 Y N N -19.638 6.488 -16.421 -4.418 0.501 -0.874 N7 IWA 38 IWA N9 N8 N 0 1 Y N N -18.781 8.398 -17.061 -2.898 -0.947 -0.270 N9 IWA 39 IWA H1 H1 H 0 1 N N N -23.513 7.448 -18.532 -7.645 -2.395 0.533 H1 IWA 40 IWA H2 H2 H 0 1 N N N -8.851 3.272 -22.664 9.638 0.448 -1.768 H2 IWA 41 IWA H3 H3 H 0 1 N N N -7.259 3.239 -22.303 10.885 -0.475 -1.168 H3 IWA 42 IWA H5 H5 H 0 1 N N N -9.248 1.297 -21.388 9.804 -0.701 0.942 H5 IWA 43 IWA H6 H6 H 0 1 N N N -19.107 10.534 -18.322 -3.130 -3.497 2.020 H6 IWA 44 IWA H7 H7 H 0 1 N N N -20.122 10.502 -19.804 -3.813 -4.693 0.893 H7 IWA 45 IWA H8 H8 H 0 1 N N N -20.736 11.292 -18.312 -2.545 -3.574 0.341 H8 IWA 46 IWA H9 H9 H 0 1 N N N -19.684 1.108 -19.184 -5.672 5.274 2.547 H9 IWA 47 IWA H10 H10 H 0 1 N N N -20.314 0.733 -16.819 -7.463 3.659 2.051 H10 IWA 48 IWA H11 H11 H 0 1 N N N -19.103 3.388 -19.954 -3.595 5.254 1.225 H11 IWA 49 IWA H12 H12 H 0 1 N N N -20.365 2.631 -15.232 -7.174 2.020 0.235 H12 IWA 50 IWA H13 H13 H 0 1 N N N -19.142 5.279 -18.363 -3.310 3.621 -0.595 H13 IWA 51 IWA H14 H14 H 0 1 N N N -13.444 5.585 -21.648 3.128 -3.578 0.730 H14 IWA 52 IWA H15 H15 H 0 1 N N N -15.710 6.163 -20.858 0.711 -3.249 0.652 H15 IWA 53 IWA H16 H16 H 0 1 N N N -12.117 5.552 -17.586 3.754 0.270 -1.027 H16 IWA 54 IWA H17 H17 H 0 1 N N N -20.761 5.113 -15.233 -6.021 1.467 -1.821 H17 IWA 55 IWA H18 H18 H 0 1 N N N -18.979 5.000 -15.038 -4.414 2.144 -2.178 H18 IWA 56 IWA H19 H19 H 0 1 N N N -14.175 6.139 -15.874 1.204 1.577 -1.536 H19 IWA 57 IWA H21 H21 H 0 1 N N N -9.458 2.328 -19.398 7.722 0.654 1.315 H21 IWA 58 IWA H22 H22 H 0 1 N N N -7.760 2.915 -19.397 7.695 1.027 -0.425 H22 IWA 59 IWA H23 H23 H 0 1 N N N -8.400 4.972 -20.095 7.569 -1.395 -0.943 H23 IWA 60 IWA H24 H24 H 0 1 N N N -9.379 4.287 -21.437 7.596 -1.768 0.798 H24 IWA 61 IWA H25 H25 H 0 1 N N N -11.152 5.531 -21.104 5.336 -2.772 -0.214 H25 IWA 62 IWA H26 H26 H 0 1 N N N -6.113 0.391 -19.532 10.793 2.527 2.144 H26 IWA 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IWA N CA SING N N 1 IWA O C DOUB N N 2 IWA CA C SING N N 3 IWA CA CB SING N N 4 IWA C OXT SING N N 5 IWA CAM CAN DOUB Y N 6 IWA CAM CBB SING Y N 7 IWA CG CB SING N N 8 IWA CG CD SING N N 9 IWA NE2 CBB SING N N 10 IWA NE2 CD SING N N 11 IWA CAN CBH SING Y N 12 IWA CBB CAO DOUB Y N 13 IWA CD OE1 DOUB N N 14 IWA O2 C2 DOUB N N 15 IWA CAJ CAH DOUB Y N 16 IWA CAJ CAL SING Y N 17 IWA CBH NAV SING Y N 18 IWA CBH CBG DOUB Y N 19 IWA CAA N3 SING N N 20 IWA C2 N3 SING N N 21 IWA C2 N1 SING N N 22 IWA CAH CAI SING Y N 23 IWA CAO CBG SING Y N 24 IWA N3 C4 SING N N 25 IWA N1 C6 SING N N 26 IWA NAV CBC DOUB Y N 27 IWA CAL CBA DOUB Y N 28 IWA CBG NAS SING Y N 29 IWA C4 C5 DOUB Y N 30 IWA C4 N9 SING Y N 31 IWA C6 C5 SING N N 32 IWA C6 O6 DOUB N N 33 IWA CAI CAK DOUB Y N 34 IWA C5 N7 SING Y N 35 IWA N9 C8 DOUB Y N 36 IWA CBC NAS SING Y N 37 IWA CBC SAX SING N N 38 IWA CBA CAK SING Y N 39 IWA CBA CAR SING N N 40 IWA N7 C8 SING Y N 41 IWA N7 CAR SING N N 42 IWA C8 SAX SING N N 43 IWA N1 H1 SING N N 44 IWA N H2 SING N N 45 IWA N H3 SING N N 46 IWA CA H5 SING N N 47 IWA CAA H6 SING N N 48 IWA CAA H7 SING N N 49 IWA CAA H8 SING N N 50 IWA CAH H9 SING N N 51 IWA CAI H10 SING N N 52 IWA CAJ H11 SING N N 53 IWA CAK H12 SING N N 54 IWA CAL H13 SING N N 55 IWA CAM H14 SING N N 56 IWA CAN H15 SING N N 57 IWA CAO H16 SING N N 58 IWA CAR H17 SING N N 59 IWA CAR H18 SING N N 60 IWA NAS H19 SING N N 61 IWA CB H21 SING N N 62 IWA CB H22 SING N N 63 IWA CG H23 SING N N 64 IWA CG H24 SING N N 65 IWA NE2 H25 SING N N 66 IWA OXT H26 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IWA InChI InChI 1.06 "InChI=1S/C25H24N8O5S/c1-32-20-19(21(35)31-24(32)38)33(12-13-5-3-2-4-6-13)25(30-20)39-23-28-16-9-7-14(11-17(16)29-23)27-18(34)10-8-15(26)22(36)37/h2-7,9,11,15H,8,10,12,26H2,1H3,(H,27,34)(H,28,29)(H,36,37)(H,31,35,38)/t15-/m1/s1" IWA InChIKey InChI 1.06 XIOGIICTCSCBAE-OAHLLOKOSA-N IWA SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Sc4[nH]c5cc(NC(=O)CC[C@@H](N)C(O)=O)ccc5n4)nc12" IWA SMILES CACTVS 3.385 "CN1C(=O)NC(=O)c2n(Cc3ccccc3)c(Sc4[nH]c5cc(NC(=O)CC[CH](N)C(O)=O)ccc5n4)nc12" IWA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)Sc3[nH]c4cc(ccc4n3)NC(=O)CC[C@H](C(=O)O)N)Cc5ccccc5)C(=O)NC1=O" IWA SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2c(n(c(n2)Sc3[nH]c4cc(ccc4n3)NC(=O)CCC(C(=O)O)N)Cc5ccccc5)C(=O)NC1=O" # _pdbx_chem_comp_identifier.comp_id IWA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-5-[[2-[3-methyl-2,6-bis(oxidanylidene)-7-(phenylmethyl)purin-8-yl]sulfanyl-3~{H}-benzimidazol-5-yl]amino]-5-oxidanylidene-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IWA "Create component" 2022-04-14 PDBE IWA "Modify descriptor" 2022-08-22 RCSB IWA "Initial release" 2022-09-07 RCSB #