data_IXJ # _chem_comp.id IXJ _chem_comp.name "(2~{R})-6-[[(2~{S})-6-azanyl-2-[[(2~{S})-6-azanyl-2-(2-phenylethanoylamino)hexanoyl]amino]hexanoyl]amino]-2-carbamimidamido-hexanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H46 N8 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-20 _chem_comp.pdbx_modified_date 2022-12-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 562.705 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IXJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZMI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IXJ N1 N1 N 0 1 N N N -0.999 0.066 -9.433 -5.026 6.244 -0.567 N1 IXJ 1 IXJ C7 C1 C 0 1 N N S -8.329 4.390 -13.642 0.283 -1.011 0.266 C7 IXJ 2 IXJ C8 C2 C 0 1 N N N -8.633 5.125 -12.336 0.308 -2.377 -0.424 C8 IXJ 3 IXJ N2 N2 N 0 1 N N N -6.899 4.159 -13.773 -0.921 -0.282 -0.140 N2 IXJ 4 IXJ C9 C3 C 0 1 N N N -7.994 4.502 -11.096 -0.865 -3.223 0.076 C9 IXJ 5 IXJ O1 O1 O 0 1 N N N -5.577 7.552 -19.912 10.983 -0.236 0.867 O1 IXJ 6 IXJ C1 C4 C 0 1 N N S -4.856 2.830 -13.640 -3.323 0.263 0.091 C1 IXJ 7 IXJ C5 C5 C 0 1 N N N -1.331 0.589 -10.764 -5.259 4.800 -0.704 C5 IXJ 8 IXJ C6 C6 C 0 1 N N N -6.371 2.927 -13.821 -2.085 -0.488 0.509 C6 IXJ 9 IXJ N3 N3 N 0 1 N N N -8.829 1.737 -8.579 -1.987 -6.745 -0.776 N3 IXJ 10 IXJ C4 C7 C 0 1 N N N -2.785 1.003 -10.877 -4.049 4.035 -0.164 C4 IXJ 11 IXJ O4 O2 O 0 1 N N N -7.043 1.910 -13.997 -2.135 -1.276 1.429 O4 IXJ 12 IXJ C3 C8 C 0 1 N N N -3.116 1.582 -12.239 -4.291 2.531 -0.307 C3 IXJ 13 IXJ O3 O3 O 0 1 N N N -8.518 6.377 -14.967 1.382 0.841 -0.699 O3 IXJ 14 IXJ C2 C9 C 0 1 N N N -4.546 2.096 -12.334 -3.081 1.766 0.234 C2 IXJ 15 IXJ N4 N4 N 0 1 N N N -9.748 4.608 -15.622 2.734 -0.704 0.142 N4 IXJ 16 IXJ N N5 N 0 1 N N N -4.228 4.141 -13.655 -4.446 -0.134 0.945 N IXJ 17 IXJ C C10 C 0 1 N N N -3.759 4.710 -14.772 -5.710 -0.019 0.493 C IXJ 18 IXJ O O4 O 0 1 N N N -3.871 4.193 -15.881 -5.918 0.414 -0.621 O IXJ 19 IXJ C10 C11 C 0 1 N N N -8.726 3.277 -10.558 -0.839 -4.588 -0.613 C10 IXJ 20 IXJ C11 C12 C 0 1 N N N -8.023 2.696 -9.345 -2.012 -5.434 -0.114 C11 IXJ 21 IXJ C12 C13 C 0 1 N N N -8.867 5.211 -14.816 1.505 -0.224 -0.132 C12 IXJ 22 IXJ C13 C14 C 0 1 N N N -9.359 3.759 -16.741 3.922 0.061 -0.245 C13 IXJ 23 IXJ C14 C15 C 0 1 N N N -9.029 4.522 -18.020 5.179 -0.701 0.179 C14 IXJ 24 IXJ C15 C16 C 0 1 N N N -7.690 5.237 -17.948 6.420 0.098 -0.225 C15 IXJ 25 IXJ C16 C17 C 0 1 N N N -6.775 4.934 -19.123 7.677 -0.663 0.199 C16 IXJ 26 IXJ C17 C18 C 0 1 N N R -5.342 5.423 -18.905 8.918 0.136 -0.205 C17 IXJ 27 IXJ C18 C19 C 0 1 N N N -3.142 4.791 -19.751 9.627 2.479 0.035 C18 IXJ 28 IXJ C19 C20 C 0 1 N N N -5.299 6.940 -18.784 10.155 -0.669 0.101 C19 IXJ 29 IXJ C20 C21 C 0 1 N N N -3.082 6.053 -14.582 -6.865 -0.427 1.371 C20 IXJ 30 IXJ C21 C22 C 0 1 Y N N -1.680 6.092 -15.148 -8.160 -0.200 0.635 C21 IXJ 31 IXJ C22 C23 C 0 1 Y N N -0.668 5.311 -14.608 -8.698 -1.207 -0.145 C22 IXJ 32 IXJ C23 C24 C 0 1 Y N N 0.613 5.361 -15.128 -9.886 -0.999 -0.820 C23 IXJ 33 IXJ C24 C25 C 0 1 Y N N 0.896 6.194 -16.198 -10.536 0.216 -0.716 C24 IXJ 34 IXJ C25 C26 C 0 1 Y N N -0.096 6.985 -16.758 -9.999 1.223 0.064 C25 IXJ 35 IXJ C29 C27 C 0 1 Y N N -1.378 6.925 -16.222 -8.814 1.013 0.744 C29 IXJ 36 IXJ N5 N6 N 0 1 N N N -4.473 4.949 -19.970 8.955 1.393 0.545 N5 IXJ 37 IXJ N6 N7 N 0 1 N N N -2.712 5.154 -18.463 10.264 2.384 -1.179 N6 IXJ 38 IXJ N7 N8 N 0 1 N N N -2.375 4.333 -20.720 9.660 3.598 0.703 N7 IXJ 39 IXJ O2 O5 O 0 1 N N N -5.032 7.509 -17.743 10.338 -1.866 -0.478 O2 IXJ 40 IXJ H1 H1 H 0 1 N N N -0.033 -0.193 -9.407 -5.812 6.772 -0.918 H1 IXJ 41 IXJ H2 H2 H 0 1 N N N -1.174 0.770 -8.745 -4.825 6.489 0.391 H2 IXJ 42 IXJ H4 H4 H 0 1 N N N -8.854 3.424 -13.626 0.276 -1.150 1.347 H4 IXJ 43 IXJ H5 H5 H 0 1 N N N -8.266 6.158 -12.429 0.226 -2.241 -1.502 H5 IXJ 44 IXJ H6 H6 H 0 1 N N N -9.724 5.135 -12.193 1.246 -2.883 -0.192 H6 IXJ 45 IXJ H7 H7 H 0 1 N N N -6.287 4.948 -13.829 -0.882 0.349 -0.876 H7 IXJ 46 IXJ H8 H8 H 0 1 N N N -6.966 4.204 -11.351 -0.781 -3.358 1.154 H8 IXJ 47 IXJ H9 H9 H 0 1 N N N -7.969 5.264 -10.303 -1.802 -2.717 -0.155 H9 IXJ 48 IXJ H10 H10 H 0 1 N N N -4.453 2.231 -14.470 -3.556 0.029 -0.948 H10 IXJ 49 IXJ H11 H11 H 0 1 N N N -1.127 -0.192 -11.511 -6.148 4.520 -0.139 H11 IXJ 50 IXJ H12 H12 H 0 1 N N N -0.698 1.465 -10.967 -5.404 4.554 -1.756 H12 IXJ 51 IXJ H13 H13 H 0 1 N N N -8.298 1.402 -7.801 -2.752 -7.323 -0.463 H13 IXJ 52 IXJ H14 H14 H 0 1 N N N -9.658 2.188 -8.248 -1.997 -6.644 -1.780 H14 IXJ 53 IXJ H16 H16 H 0 1 N N N -2.997 1.762 -10.109 -3.160 4.315 -0.729 H16 IXJ 54 IXJ H17 H17 H 0 1 N N N -3.418 0.120 -10.705 -3.903 4.282 0.888 H17 IXJ 55 IXJ H18 H18 H 0 1 N N N -2.974 0.798 -12.997 -5.180 2.251 0.259 H18 IXJ 56 IXJ H19 H19 H 0 1 N N N -2.429 2.417 -12.442 -4.436 2.285 -1.358 H19 IXJ 57 IXJ H20 H20 H 0 1 N N N -4.721 2.789 -11.498 -2.936 2.013 1.286 H20 IXJ 58 IXJ H21 H21 H 0 1 N N N -5.229 1.238 -12.249 -2.192 2.047 -0.331 H21 IXJ 59 IXJ H22 H22 H 0 1 N N N -10.723 4.747 -15.448 2.832 -1.556 0.595 H22 IXJ 60 IXJ H23 H23 H 0 1 N N N -4.143 4.640 -12.793 -4.279 -0.481 1.836 H23 IXJ 61 IXJ H24 H24 H 0 1 N N N -9.748 3.568 -10.273 -0.922 -4.453 -1.692 H24 IXJ 62 IXJ H25 H25 H 0 1 N N N -8.769 2.511 -11.347 0.099 -5.094 -0.382 H25 IXJ 63 IXJ H26 H26 H 0 1 N N N -7.112 2.183 -9.688 -2.949 -4.928 -0.345 H26 IXJ 64 IXJ H27 H27 H 0 1 N N N -7.748 3.525 -8.677 -1.929 -5.570 0.964 H27 IXJ 65 IXJ H28 H28 H 0 1 N N N -10.189 3.069 -16.955 3.928 0.200 -1.326 H28 IXJ 66 IXJ H29 H29 H 0 1 N N N -8.470 3.183 -16.444 3.903 1.034 0.246 H29 IXJ 67 IXJ H30 H30 H 0 1 N N N -9.817 5.268 -18.198 5.173 -0.839 1.260 H30 IXJ 68 IXJ H31 H31 H 0 1 N N N -9.003 3.810 -18.858 5.198 -1.673 -0.312 H31 IXJ 69 IXJ H32 H32 H 0 1 N N N -7.181 4.930 -17.023 6.426 0.237 -1.306 H32 IXJ 70 IXJ H33 H33 H 0 1 N N N -7.875 6.321 -17.922 6.402 1.071 0.266 H33 IXJ 71 IXJ H34 H34 H 0 1 N N N -7.181 5.426 -20.019 7.671 -0.802 1.280 H34 IXJ 72 IXJ H35 H35 H 0 1 N N N -6.754 3.845 -19.280 7.696 -1.636 -0.292 H35 IXJ 73 IXJ H36 H36 H 0 1 N N N -4.989 5.002 -17.952 8.880 0.351 -1.273 H36 IXJ 74 IXJ H37 H37 H 0 1 N N N -3.032 6.271 -13.505 -6.772 -1.483 1.626 H37 IXJ 75 IXJ H38 H38 H 0 1 N N N -3.685 6.824 -15.085 -6.856 0.169 2.283 H38 IXJ 76 IXJ H39 H39 H 0 1 N N N -0.882 4.658 -13.775 -8.189 -2.157 -0.227 H39 IXJ 77 IXJ H40 H40 H 0 1 N N N 1.393 4.750 -14.699 -10.305 -1.786 -1.430 H40 IXJ 78 IXJ H41 H41 H 0 1 N N N 1.898 6.228 -16.600 -11.464 0.379 -1.244 H41 IXJ 79 IXJ H42 H42 H 0 1 N N N 0.122 7.634 -17.593 -10.509 2.171 0.149 H42 IXJ 80 IXJ H43 H43 H 0 1 N N N -2.157 7.539 -16.649 -8.394 1.799 1.353 H43 IXJ 81 IXJ H44 H44 H 0 1 N N N -4.858 4.738 -20.869 8.505 1.460 1.402 H44 IXJ 82 IXJ H45 H45 H 0 1 N N N -3.371 5.497 -17.794 10.240 1.552 -1.676 H45 IXJ 83 IXJ H46 H46 H 0 1 N N N -1.747 5.069 -18.216 10.738 3.150 -1.539 H46 IXJ 84 IXJ H47 H47 H 0 1 N N N -1.417 4.266 -20.440 10.134 4.364 0.343 H47 IXJ 85 IXJ H48 H48 H 0 1 N N N -5.058 8.449 -17.880 11.146 -2.345 -0.251 H48 IXJ 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IXJ N7 C18 DOUB N N 1 IXJ N5 C18 SING N N 2 IXJ N5 C17 SING N N 3 IXJ O1 C19 DOUB N N 4 IXJ C18 N6 SING N N 5 IXJ C16 C17 SING N N 6 IXJ C16 C15 SING N N 7 IXJ C17 C19 SING N N 8 IXJ C19 O2 SING N N 9 IXJ C14 C15 SING N N 10 IXJ C14 C13 SING N N 11 IXJ C25 C29 DOUB Y N 12 IXJ C25 C24 SING Y N 13 IXJ C13 N4 SING N N 14 IXJ C29 C21 SING Y N 15 IXJ C24 C23 DOUB Y N 16 IXJ O C DOUB N N 17 IXJ N4 C12 SING N N 18 IXJ C21 C22 DOUB Y N 19 IXJ C21 C20 SING N N 20 IXJ C23 C22 SING Y N 21 IXJ O3 C12 DOUB N N 22 IXJ C12 C7 SING N N 23 IXJ C C20 SING N N 24 IXJ C N SING N N 25 IXJ O4 C6 DOUB N N 26 IXJ C6 N2 SING N N 27 IXJ C6 C1 SING N N 28 IXJ N2 C7 SING N N 29 IXJ N C1 SING N N 30 IXJ C7 C8 SING N N 31 IXJ C1 C2 SING N N 32 IXJ C8 C9 SING N N 33 IXJ C2 C3 SING N N 34 IXJ C3 C4 SING N N 35 IXJ C9 C10 SING N N 36 IXJ C4 C5 SING N N 37 IXJ C5 N1 SING N N 38 IXJ C10 C11 SING N N 39 IXJ C11 N3 SING N N 40 IXJ N1 H1 SING N N 41 IXJ N1 H2 SING N N 42 IXJ C7 H4 SING N N 43 IXJ C8 H5 SING N N 44 IXJ C8 H6 SING N N 45 IXJ N2 H7 SING N N 46 IXJ C9 H8 SING N N 47 IXJ C9 H9 SING N N 48 IXJ C1 H10 SING N N 49 IXJ C5 H11 SING N N 50 IXJ C5 H12 SING N N 51 IXJ N3 H13 SING N N 52 IXJ N3 H14 SING N N 53 IXJ C4 H16 SING N N 54 IXJ C4 H17 SING N N 55 IXJ C3 H18 SING N N 56 IXJ C3 H19 SING N N 57 IXJ C2 H20 SING N N 58 IXJ C2 H21 SING N N 59 IXJ N4 H22 SING N N 60 IXJ N H23 SING N N 61 IXJ C10 H24 SING N N 62 IXJ C10 H25 SING N N 63 IXJ C11 H26 SING N N 64 IXJ C11 H27 SING N N 65 IXJ C13 H28 SING N N 66 IXJ C13 H29 SING N N 67 IXJ C14 H30 SING N N 68 IXJ C14 H31 SING N N 69 IXJ C15 H32 SING N N 70 IXJ C15 H33 SING N N 71 IXJ C16 H34 SING N N 72 IXJ C16 H35 SING N N 73 IXJ C17 H36 SING N N 74 IXJ C20 H37 SING N N 75 IXJ C20 H38 SING N N 76 IXJ C22 H39 SING N N 77 IXJ C23 H40 SING N N 78 IXJ C24 H41 SING N N 79 IXJ C25 H42 SING N N 80 IXJ C29 H43 SING N N 81 IXJ N5 H44 SING N N 82 IXJ N6 H45 SING N N 83 IXJ N6 H46 SING N N 84 IXJ N7 H47 SING N N 85 IXJ O2 H48 SING N N 86 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IXJ InChI InChI 1.06 "InChI=1S/C27H46N8O5/c28-15-7-4-12-20(24(37)32-17-9-6-14-22(26(39)40)35-27(30)31)34-25(38)21(13-5-8-16-29)33-23(36)18-19-10-2-1-3-11-19/h1-3,10-11,20-22H,4-9,12-18,28-29H2,(H,32,37)(H,33,36)(H,34,38)(H,39,40)(H4,30,31,35)/t20-,21-,22+/m0/s1" IXJ InChIKey InChI 1.06 XTCNOWZXILHRRG-FDFHNCONSA-N IXJ SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@H](NC(=O)[C@H](CCCCN)NC(=O)Cc1ccccc1)C(=O)NCCCC[C@@H](NC(N)=N)C(O)=O" IXJ SMILES CACTVS 3.385 "NCCCC[CH](NC(=O)[CH](CCCCN)NC(=O)Cc1ccccc1)C(=O)NCCCC[CH](NC(N)=N)C(O)=O" IXJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H](CCCCNC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc1ccccc1)C(=O)O" IXJ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC(=O)NC(CCCCN)C(=O)NC(CCCCN)C(=O)NCCCCC(C(=O)O)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id IXJ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-6-[[(2~{S})-6-azanyl-2-[[(2~{S})-6-azanyl-2-(2-phenylethanoylamino)hexanoyl]amino]hexanoyl]amino]-2-carbamimidamido-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IXJ "Create component" 2022-04-20 PDBE IXJ "Modify descriptor" 2022-08-22 RCSB IXJ "Initial release" 2022-12-28 RCSB #