data_IXQ # _chem_comp.id IXQ _chem_comp.name "N-[3-[[[2-(6-chloranyl-5-fluoranyl-1H-benzimidazol-2-yl)pyrimidin-4-yl]amino]methyl]pyridin-2-yl]-N-methyl-methanesulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H17 Cl F N7 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N-(3-{[2-(5-Chloro-6-fluoro-1H-benzoimidazol-2-yl)-pyrimidin-4-ylamino]-methyl}-pyridin-2-yl)-N-methyl-methanesulfonamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-20 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.900 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IXQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZKS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IXQ C1 C1 C 0 1 N N N -28.122 16.397 -27.990 4.463 3.251 1.462 C1 IXQ 1 IXQ C6 C2 C 0 1 N N N -25.300 16.099 -29.981 5.267 -0.175 2.083 C6 IXQ 2 IXQ C7 C3 C 0 1 Y N N -24.680 15.198 -27.743 5.170 0.310 -0.340 C7 IXQ 3 IXQ C11 C4 C 0 1 Y N N -22.804 14.011 -26.762 5.128 -1.018 -2.328 C11 IXQ 4 IXQ C12 C5 C 0 1 Y N N -23.767 14.120 -27.772 4.660 -0.771 -1.050 C12 IXQ 5 IXQ C15 C6 C 0 1 Y N N -23.795 10.758 -27.972 1.166 -1.674 -0.087 C15 IXQ 6 IXQ C17 C7 C 0 1 Y N N -25.773 9.766 -27.305 -1.113 -1.727 0.254 C17 IXQ 7 IXQ C19 C8 C 0 1 Y N N -23.833 8.518 -27.154 0.122 -3.519 1.015 C19 IXQ 8 IXQ C21 C9 C 0 1 Y N N -27.218 9.951 -27.083 -2.434 -1.076 0.096 C21 IXQ 9 IXQ N22 N1 N 0 1 Y N N -28.077 9.069 -26.636 -3.625 -1.595 0.530 N22 IXQ 10 IXQ C23 C10 C 0 1 Y N N -29.286 9.648 -26.540 -4.609 -0.688 0.194 C23 IXQ 11 IXQ C24 C11 C 0 1 Y N N -30.535 9.181 -26.129 -5.986 -0.655 0.366 C24 IXQ 12 IXQ C27 C12 C 0 1 Y N N -31.467 11.373 -26.555 -6.069 1.482 -0.734 C27 IXQ 13 IXQ C30 C13 C 0 1 Y N N -29.158 10.986 -26.961 -3.955 0.378 -0.450 C30 IXQ 14 IXQ S2 S1 S 0 1 N N N -27.234 14.910 -28.529 3.542 1.711 1.198 S2 IXQ 15 IXQ O3 O1 O 0 1 N N N -27.124 13.987 -27.446 2.902 1.300 2.398 O3 IXQ 16 IXQ O4 O2 O 0 1 N N N -27.728 14.493 -29.790 2.831 1.759 -0.032 O4 IXQ 17 IXQ N5 N2 N 0 1 N N N -25.658 15.396 -28.745 4.713 0.567 0.947 N5 IXQ 18 IXQ N8 N3 N 0 1 Y N N -24.594 16.102 -26.758 6.092 1.094 -0.877 N8 IXQ 19 IXQ C9 C14 C 0 1 Y N N -23.671 16.024 -25.806 6.557 0.882 -2.094 C9 IXQ 20 IXQ C10 C15 C 0 1 Y N N -22.760 14.977 -25.761 6.094 -0.172 -2.855 C10 IXQ 21 IXQ C13 C16 C 0 1 N N N -23.816 13.085 -28.874 3.611 -1.662 -0.435 C13 IXQ 22 IXQ N14 N4 N 0 1 N N N -23.120 11.847 -28.486 2.294 -1.037 -0.580 N14 IXQ 23 IXQ N16 N5 N 0 1 Y N N -25.105 10.814 -27.764 -0.032 -1.116 -0.213 N16 IXQ 24 IXQ N18 N6 N 0 1 Y N N -25.155 8.636 -26.984 -1.041 -2.906 0.857 N18 IXQ 25 IXQ C20 C17 C 0 1 Y N N -23.103 9.582 -27.665 1.273 -2.917 0.544 C20 IXQ 26 IXQ C25 C18 C 0 1 Y N N -31.593 10.051 -26.141 -6.710 0.424 -0.096 C25 IXQ 27 IXQ CL26 CL1 CL 0 0 N N N -33.140 9.479 -25.638 -8.432 0.463 0.120 CL26 IXQ 28 IXQ F28 F1 F 0 1 N N N -32.551 12.182 -26.553 -6.792 2.533 -1.180 F28 IXQ 29 IXQ C29 C19 C 0 1 Y N N -30.242 11.849 -26.975 -4.704 1.467 -0.913 C29 IXQ 30 IXQ N31 N7 N 0 1 Y N N -27.841 11.144 -27.301 -2.639 0.085 -0.473 N31 IXQ 31 IXQ H1 H1 H 0 1 N N N -27.738 16.720 -27.011 5.115 3.140 2.328 H1 IXQ 32 IXQ H2 H2 H 0 1 N N N -27.972 17.201 -28.726 5.064 3.471 0.580 H2 IXQ 33 IXQ H3 H3 H 0 1 N N N -29.196 16.173 -27.906 3.762 4.068 1.637 H3 IXQ 34 IXQ H4 H4 H 0 1 N N N -24.229 16.348 -29.965 4.627 -1.027 2.308 H4 IXQ 35 IXQ H5 H5 H 0 1 N N N -25.513 15.453 -30.845 6.268 -0.528 1.833 H5 IXQ 36 IXQ H6 H6 H 0 1 N N N -25.890 17.024 -30.061 5.320 0.480 2.953 H6 IXQ 37 IXQ H7 H7 H 0 1 N N N -22.104 13.188 -26.760 4.749 -1.850 -2.903 H7 IXQ 38 IXQ H8 H8 H 0 1 N N N -23.335 7.596 -26.894 0.170 -4.478 1.508 H8 IXQ 39 IXQ H9 H9 H 0 1 N N N -27.867 8.119 -26.404 -3.752 -2.441 0.987 H9 IXQ 40 IXQ H10 H10 H 0 1 N N N -30.665 8.158 -25.809 -6.490 -1.472 0.860 H10 IXQ 41 IXQ H11 H11 H 0 1 N N N -23.628 16.793 -25.049 7.309 1.543 -2.500 H11 IXQ 42 IXQ H12 H12 H 0 1 N N N -22.032 14.914 -24.966 6.481 -0.338 -3.850 H12 IXQ 43 IXQ H13 H13 H 0 1 N N N -23.335 13.498 -29.773 3.612 -2.627 -0.941 H13 IXQ 44 IXQ H14 H14 H 0 1 N N N -24.867 12.849 -29.096 3.831 -1.806 0.623 H14 IXQ 45 IXQ H15 H15 H 0 1 N N N -22.648 11.522 -29.306 2.211 -0.176 -1.020 H15 IXQ 46 IXQ H16 H16 H 0 1 N N N -22.037 9.505 -27.820 2.234 -3.396 0.661 H16 IXQ 47 IXQ H17 H17 H 0 1 N N N -30.131 12.871 -27.307 -4.213 2.291 -1.409 H17 IXQ 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IXQ C6 N5 SING N N 1 IXQ O4 S2 DOUB N N 2 IXQ C13 N14 SING N N 3 IXQ C13 C12 SING N N 4 IXQ N5 S2 SING N N 5 IXQ N5 C7 SING N N 6 IXQ S2 C1 SING N N 7 IXQ S2 O3 DOUB N N 8 IXQ N14 C15 SING N N 9 IXQ C15 N16 DOUB Y N 10 IXQ C15 C20 SING Y N 11 IXQ C12 C7 DOUB Y N 12 IXQ C12 C11 SING Y N 13 IXQ N16 C17 SING Y N 14 IXQ C7 N8 SING Y N 15 IXQ C20 C19 DOUB Y N 16 IXQ C17 C21 SING N N 17 IXQ C17 N18 DOUB Y N 18 IXQ N31 C21 DOUB Y N 19 IXQ N31 C30 SING Y N 20 IXQ C19 N18 SING Y N 21 IXQ C21 N22 SING Y N 22 IXQ C29 C30 SING Y N 23 IXQ C29 C27 DOUB Y N 24 IXQ C30 C23 DOUB Y N 25 IXQ C11 C10 DOUB Y N 26 IXQ N8 C9 DOUB Y N 27 IXQ N22 C23 SING Y N 28 IXQ C27 F28 SING N N 29 IXQ C27 C25 SING Y N 30 IXQ C23 C24 SING Y N 31 IXQ C25 C24 DOUB Y N 32 IXQ C25 CL26 SING N N 33 IXQ C9 C10 SING Y N 34 IXQ C1 H1 SING N N 35 IXQ C1 H2 SING N N 36 IXQ C1 H3 SING N N 37 IXQ C6 H4 SING N N 38 IXQ C6 H5 SING N N 39 IXQ C6 H6 SING N N 40 IXQ C11 H7 SING N N 41 IXQ C19 H8 SING N N 42 IXQ N22 H9 SING N N 43 IXQ C24 H10 SING N N 44 IXQ C9 H11 SING N N 45 IXQ C10 H12 SING N N 46 IXQ C13 H13 SING N N 47 IXQ C13 H14 SING N N 48 IXQ N14 H15 SING N N 49 IXQ C20 H16 SING N N 50 IXQ C29 H17 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IXQ InChI InChI 1.06 "InChI=1S/C19H17ClFN7O2S/c1-28(31(2,29)30)19-11(4-3-6-23-19)10-24-16-5-7-22-17(27-16)18-25-14-8-12(20)13(21)9-15(14)26-18/h3-9H,10H2,1-2H3,(H,25,26)(H,22,24,27)" IXQ InChIKey InChI 1.06 SSZBLNIVOGDOJH-UHFFFAOYSA-N IXQ SMILES_CANONICAL CACTVS 3.385 "CN(c1ncccc1CNc2ccnc(n2)c3[nH]c4cc(Cl)c(F)cc4n3)[S](C)(=O)=O" IXQ SMILES CACTVS 3.385 "CN(c1ncccc1CNc2ccnc(n2)c3[nH]c4cc(Cl)c(F)cc4n3)[S](C)(=O)=O" IXQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(c1c(cccn1)CNc2ccnc(n2)c3[nH]c4cc(c(cc4n3)F)Cl)S(=O)(=O)C" IXQ SMILES "OpenEye OEToolkits" 2.0.7 "CN(c1c(cccn1)CNc2ccnc(n2)c3[nH]c4cc(c(cc4n3)F)Cl)S(=O)(=O)C" # _pdbx_chem_comp_identifier.comp_id IXQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[3-[[[2-(6-chloranyl-5-fluoranyl-1~{H}-benzimidazol-2-yl)pyrimidin-4-yl]amino]methyl]pyridin-2-yl]-~{N}-methyl-methanesulfonamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id IXQ _pdbx_chem_comp_synonyms.name "N-(3-{[2-(5-Chloro-6-fluoro-1H-benzoimidazol-2-yl)-pyrimidin-4-ylamino]-methyl}-pyridin-2-yl)-N-methyl-methanesulfonamide" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IXQ "Create component" 2022-04-20 PDBE IXQ "Modify aromatic_flag" 2022-08-12 PDBE IXQ "Modify descriptor" 2022-08-22 RCSB IXQ "Initial release" 2023-02-22 RCSB #