data_IY3 # _chem_comp.id IY3 _chem_comp.name "(2~{S})-2-[2-[3-(aminomethyl)phenyl]ethanoylamino]-6-azanyl-~{N}-[(2~{S})-6-azanyl-1-[[(5~{R})-6-azanyl-5-carbamimidamido-6-oxidanylidene-hexyl]amino]-1-oxidanylidene-hexan-2-yl]hexanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H50 N10 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-20 _chem_comp.pdbx_modified_date 2022-12-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 590.761 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IY3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZLD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IY3 N1 N1 N 0 1 N N N -15.782 13.423 -17.640 -10.971 1.666 -0.420 N1 IY3 1 IY3 C7 C1 C 0 1 N N N -17.847 15.849 -20.088 -10.118 -2.666 0.024 C7 IY3 2 IY3 C8 C2 C 0 1 N N S -12.646 16.093 -13.844 -0.888 1.116 0.245 C8 IY3 3 IY3 N2 N2 N 0 1 N N N -16.431 15.734 -20.176 -9.477 -1.567 0.546 N2 IY3 4 IY3 C9 C3 C 0 1 N N N -12.337 15.226 -12.623 -0.962 2.490 -0.423 C9 IY3 5 IY3 O1 O1 O 0 1 N N N -15.376 13.109 -19.831 -11.556 -0.011 0.910 O1 IY3 6 IY3 C1 C4 C 0 1 N N N -10.863 15.800 -17.206 -4.495 -0.064 -0.257 C1 IY3 7 IY3 C5 C5 C 0 1 N N R -15.559 15.375 -19.069 -9.486 -0.298 -0.185 C5 IY3 8 IY3 C6 C6 C 0 1 N N N -15.565 13.860 -18.871 -10.745 0.462 0.142 C6 IY3 9 IY3 N3 N3 N 0 1 N N N -18.548 16.132 -21.277 -10.733 -2.578 -1.122 N3 IY3 10 IY3 C4 C7 C 0 1 N N N -14.138 15.871 -19.325 -8.268 0.534 0.223 C4 IY3 11 IY3 O4 O2 O 0 1 N N N -13.953 18.503 -14.353 1.528 1.440 1.396 O4 IY3 12 IY3 C3 C8 C 0 1 N N N -13.190 15.533 -18.184 -6.990 -0.181 -0.221 C3 IY3 13 IY3 O3 O3 O 0 1 N N N -17.083 16.176 -16.267 5.349 -0.097 -0.705 O3 IY3 14 IY3 C2 C9 C 0 1 N N N -11.803 16.123 -18.356 -5.773 0.651 0.187 C2 IY3 15 IY3 N4 N4 N 0 1 N N N -18.373 15.679 -18.899 -10.110 -3.857 0.710 N4 IY3 16 IY3 N N5 N 0 1 N N N -11.385 16.252 -15.921 -3.329 0.733 0.133 N IY3 17 IY3 C C10 C 0 1 N N N -12.045 15.445 -15.089 -2.087 0.297 -0.156 C IY3 18 IY3 O O4 O 0 1 N N N -12.195 14.244 -15.296 -1.935 -0.755 -0.741 O IY3 19 IY3 C10 C11 C 0 1 N N N -12.946 15.764 -11.335 0.187 3.365 0.082 C10 IY3 20 IY3 C11 C12 C 0 1 N N N -12.441 17.140 -10.938 0.113 4.740 -0.586 C11 IY3 21 IY3 C12 C13 C 0 1 N N N -13.276 17.719 -9.809 1.262 5.615 -0.081 C12 IY3 22 IY3 C13 C14 C 0 1 N N N -14.619 17.495 -14.142 1.497 0.664 0.464 C13 IY3 23 IY3 C14 C15 C 0 1 N N S -16.140 17.584 -14.034 2.755 -0.040 0.027 C14 IY3 24 IY3 C15 C16 C 0 1 N N N -16.482 18.334 -12.746 2.562 -1.553 0.148 C15 IY3 25 IY3 C16 C17 C 0 1 N N N -17.917 18.829 -12.702 3.792 -2.270 -0.413 C16 IY3 26 IY3 C17 C18 C 0 1 N N N -18.219 19.649 -11.460 3.598 -3.783 -0.292 C17 IY3 27 IY3 C18 C19 C 0 1 N N N -19.670 20.079 -11.393 4.828 -4.501 -0.852 C18 IY3 28 IY3 C19 C20 C 0 1 N N N -17.208 15.676 -15.151 5.135 0.312 0.416 C19 IY3 29 IY3 C20 C21 C 0 1 N N N -17.890 14.337 -14.947 6.282 0.743 1.293 C20 IY3 30 IY3 C21 C22 C 0 1 Y N N -19.161 14.208 -15.758 7.579 0.569 0.545 C21 IY3 31 IY3 C22 C23 C 0 1 Y N N -19.269 13.233 -16.743 8.266 -0.628 0.622 C22 IY3 32 IY3 C23 C24 C 0 1 Y N N -20.426 13.096 -17.507 9.453 -0.790 -0.068 C23 IY3 33 IY3 C24 C25 C 0 1 N N N -20.523 12.028 -18.568 10.201 -2.095 0.016 C24 IY3 34 IY3 C27 C26 C 0 1 Y N N -21.484 13.961 -17.268 9.952 0.245 -0.836 C27 IY3 35 IY3 C28 C27 C 0 1 Y N N -21.393 14.934 -16.289 9.265 1.443 -0.913 C28 IY3 36 IY3 C29 C28 C 0 1 Y N N -20.237 15.057 -15.538 8.079 1.604 -0.223 C29 IY3 37 IY3 N5 N6 N 0 1 N N N -12.562 18.682 -8.976 1.191 6.935 -0.723 N5 IY3 38 IY3 N6 N7 N 0 1 N N N -14.080 16.282 -13.981 0.336 0.432 -0.180 N6 IY3 39 IY3 N7 N8 N 0 1 N N N -20.002 20.669 -10.093 4.642 -5.953 -0.736 N7 IY3 40 IY3 N8 N9 N 0 1 N N N -16.761 16.268 -14.038 3.871 0.380 0.879 N8 IY3 41 IY3 N9 N10 N 0 1 N N N -19.627 10.904 -18.334 11.147 -2.045 1.139 N9 IY3 42 IY3 H1 H1 H 0 1 N N N -15.798 12.441 -17.454 -11.782 2.155 -0.209 H1 IY3 43 IY3 H2 H2 H 0 1 N N N -15.930 14.075 -16.897 -10.321 2.046 -1.031 H2 IY3 44 IY3 H3 H3 H 0 1 N N N -12.165 17.072 -13.700 -0.878 1.238 1.329 H3 IY3 45 IY3 H4 H4 H 0 1 N N N -16.005 15.913 -21.063 -9.019 -1.633 1.399 H4 IY3 46 IY3 H5 H5 H 0 1 N N N -12.734 14.216 -12.802 -0.882 2.374 -1.503 H5 IY3 47 IY3 H6 H6 H 0 1 N N N -11.245 15.174 -12.498 -1.913 2.963 -0.177 H6 IY3 48 IY3 H7 H7 H 0 1 N N N -10.716 14.711 -17.165 -4.442 -1.043 0.218 H7 IY3 49 IY3 H8 H8 H 0 1 N N N -9.897 16.294 -17.389 -4.505 -0.186 -1.341 H8 IY3 50 IY3 H9 H9 H 0 1 N N N -15.929 15.846 -18.147 -9.448 -0.496 -1.257 H9 IY3 51 IY3 H10 H10 H 0 1 N N N -19.534 16.195 -21.124 -11.185 -3.353 -1.491 H10 IY3 52 IY3 H11 H11 H 0 1 N N N -13.762 15.404 -20.247 -8.321 1.513 -0.253 H11 IY3 53 IY3 H12 H12 H 0 1 N N N -14.163 16.963 -19.452 -8.258 0.656 1.306 H12 IY3 54 IY3 H13 H13 H 0 1 N N N -13.619 15.920 -17.248 -6.937 -1.160 0.255 H13 IY3 55 IY3 H14 H14 H 0 1 N N N -13.098 14.439 -18.120 -7.000 -0.303 -1.304 H14 IY3 56 IY3 H15 H15 H 0 1 N N N -11.368 15.725 -19.285 -5.763 0.773 1.270 H15 IY3 57 IY3 H16 H16 H 0 1 N N N -11.896 17.216 -18.434 -5.826 1.630 -0.289 H16 IY3 58 IY3 H17 H17 H 0 1 N N N -17.784 15.480 -18.116 -9.653 -3.923 1.563 H17 IY3 59 IY3 H18 H18 H 0 1 N N N -19.363 15.748 -18.776 -10.562 -4.632 0.342 H18 IY3 60 IY3 H19 H19 H 0 1 N N N -11.242 17.205 -15.653 -3.451 1.574 0.600 H19 IY3 61 IY3 H20 H20 H 0 1 N N N -14.037 15.821 -11.466 0.108 3.482 1.163 H20 IY3 62 IY3 H21 H21 H 0 1 N N N -12.710 15.062 -10.522 1.138 2.893 -0.163 H21 IY3 63 IY3 H22 H22 H 0 1 N N N -11.395 17.058 -10.607 0.192 4.623 -1.667 H22 IY3 64 IY3 H23 H23 H 0 1 N N N -12.499 17.810 -11.809 -0.838 5.212 -0.340 H23 IY3 65 IY3 H24 H24 H 0 1 N N N -14.150 18.222 -10.248 1.183 5.731 0.999 H24 IY3 66 IY3 H25 H25 H 0 1 N N N -13.613 16.891 -9.168 2.213 5.142 -0.327 H25 IY3 67 IY3 H26 H26 H 0 1 N N N -16.516 18.168 -14.887 2.974 0.217 -1.010 H26 IY3 68 IY3 H27 H27 H 0 1 N N N -16.320 17.657 -11.894 2.432 -1.819 1.197 H27 IY3 69 IY3 H28 H28 H 0 1 N N N -15.811 19.201 -12.658 1.678 -1.852 -0.416 H28 IY3 70 IY3 H29 H29 H 0 1 N N N -18.101 19.454 -13.589 3.921 -2.003 -1.461 H29 IY3 71 IY3 H30 H30 H 0 1 N N N -18.590 17.959 -12.721 4.675 -1.971 0.151 H30 IY3 72 IY3 H31 H31 H 0 1 N N N -17.988 19.043 -10.571 3.468 -4.050 0.757 H31 IY3 73 IY3 H32 H32 H 0 1 N N N -17.584 20.547 -11.466 2.714 -4.083 -0.855 H32 IY3 74 IY3 H33 H33 H 0 1 N N N -19.858 20.824 -12.181 4.958 -4.234 -1.901 H33 IY3 75 IY3 H34 H34 H 0 1 N N N -20.310 19.200 -11.559 5.712 -4.201 -0.289 H34 IY3 76 IY3 H35 H35 H 0 1 N N N -18.138 14.226 -13.881 6.158 1.791 1.565 H35 IY3 77 IY3 H36 H36 H 0 1 N N N -17.196 13.538 -15.248 6.299 0.133 2.196 H36 IY3 78 IY3 H37 H37 H 0 1 N N N -18.438 12.567 -16.920 7.875 -1.437 1.222 H37 IY3 79 IY3 H38 H38 H 0 1 N N N -20.273 12.478 -19.540 9.495 -2.910 0.171 H38 IY3 80 IY3 H39 H39 H 0 1 N N N -21.556 11.652 -18.592 10.748 -2.260 -0.913 H39 IY3 81 IY3 H40 H40 H 0 1 N N N -22.388 13.874 -17.852 10.879 0.119 -1.375 H40 IY3 82 IY3 H41 H41 H 0 1 N N N -22.225 15.599 -16.110 9.656 2.252 -1.513 H41 IY3 83 IY3 H42 H42 H 0 1 N N N -20.172 15.819 -14.775 7.540 2.538 -0.286 H42 IY3 84 IY3 H43 H43 H 0 1 N N N -13.171 19.019 -8.258 1.940 7.531 -0.406 H43 IY3 85 IY3 H44 H44 H 0 1 N N N -11.769 18.238 -8.559 1.198 6.849 -1.728 H44 IY3 86 IY3 H46 H46 H 0 1 N N N -14.680 15.483 -13.954 0.311 -0.189 -0.925 H46 IY3 87 IY3 H47 H47 H 0 1 N N N -20.965 20.940 -10.085 3.794 -6.247 -1.196 H47 IY3 88 IY3 H48 H48 H 0 1 N N N -19.840 19.997 -9.371 5.442 -6.450 -1.099 H48 IY3 89 IY3 H50 H50 H 0 1 N N N -16.858 15.784 -13.168 3.700 0.707 1.776 H50 IY3 90 IY3 H51 H51 H 0 1 N N N -19.736 10.232 -19.067 10.672 -1.829 2.002 H51 IY3 91 IY3 H52 H52 H 0 1 N N N -18.682 11.229 -18.318 11.662 -2.910 1.216 H52 IY3 92 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IY3 N3 C7 DOUB N N 1 IY3 N2 C7 SING N N 2 IY3 N2 C5 SING N N 3 IY3 C7 N4 SING N N 4 IY3 O1 C6 DOUB N N 5 IY3 C4 C5 SING N N 6 IY3 C4 C3 SING N N 7 IY3 C5 C6 SING N N 8 IY3 C6 N1 SING N N 9 IY3 C24 N9 SING N N 10 IY3 C24 C23 SING N N 11 IY3 C2 C3 SING N N 12 IY3 C2 C1 SING N N 13 IY3 C23 C27 DOUB Y N 14 IY3 C23 C22 SING Y N 15 IY3 C27 C28 SING Y N 16 IY3 C1 N SING N N 17 IY3 C22 C21 DOUB Y N 18 IY3 C28 C29 DOUB Y N 19 IY3 O3 C19 DOUB N N 20 IY3 N C SING N N 21 IY3 C21 C29 SING Y N 22 IY3 C21 C20 SING N N 23 IY3 O C DOUB N N 24 IY3 C19 C20 SING N N 25 IY3 C19 N8 SING N N 26 IY3 C C8 SING N N 27 IY3 O4 C13 DOUB N N 28 IY3 C13 C14 SING N N 29 IY3 C13 N6 SING N N 30 IY3 N8 C14 SING N N 31 IY3 C14 C15 SING N N 32 IY3 N6 C8 SING N N 33 IY3 C8 C9 SING N N 34 IY3 C15 C16 SING N N 35 IY3 C16 C17 SING N N 36 IY3 C9 C10 SING N N 37 IY3 C17 C18 SING N N 38 IY3 C18 N7 SING N N 39 IY3 C10 C11 SING N N 40 IY3 C11 C12 SING N N 41 IY3 C12 N5 SING N N 42 IY3 N1 H1 SING N N 43 IY3 N1 H2 SING N N 44 IY3 C8 H3 SING N N 45 IY3 N2 H4 SING N N 46 IY3 C9 H5 SING N N 47 IY3 C9 H6 SING N N 48 IY3 C1 H7 SING N N 49 IY3 C1 H8 SING N N 50 IY3 C5 H9 SING N N 51 IY3 N3 H10 SING N N 52 IY3 C4 H11 SING N N 53 IY3 C4 H12 SING N N 54 IY3 C3 H13 SING N N 55 IY3 C3 H14 SING N N 56 IY3 C2 H15 SING N N 57 IY3 C2 H16 SING N N 58 IY3 N4 H17 SING N N 59 IY3 N4 H18 SING N N 60 IY3 N H19 SING N N 61 IY3 C10 H20 SING N N 62 IY3 C10 H21 SING N N 63 IY3 C11 H22 SING N N 64 IY3 C11 H23 SING N N 65 IY3 C12 H24 SING N N 66 IY3 C12 H25 SING N N 67 IY3 C14 H26 SING N N 68 IY3 C15 H27 SING N N 69 IY3 C15 H28 SING N N 70 IY3 C16 H29 SING N N 71 IY3 C16 H30 SING N N 72 IY3 C17 H31 SING N N 73 IY3 C17 H32 SING N N 74 IY3 C18 H33 SING N N 75 IY3 C18 H34 SING N N 76 IY3 C20 H35 SING N N 77 IY3 C20 H36 SING N N 78 IY3 C22 H37 SING N N 79 IY3 C24 H38 SING N N 80 IY3 C24 H39 SING N N 81 IY3 C27 H40 SING N N 82 IY3 C28 H41 SING N N 83 IY3 C29 H42 SING N N 84 IY3 N5 H43 SING N N 85 IY3 N5 H44 SING N N 86 IY3 N6 H46 SING N N 87 IY3 N7 H47 SING N N 88 IY3 N7 H48 SING N N 89 IY3 N8 H50 SING N N 90 IY3 N9 H51 SING N N 91 IY3 N9 H52 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IY3 InChI InChI 1.06 "InChI=1S/C28H50N10O4/c29-13-4-1-11-22(26(41)35-15-6-3-10-21(25(32)40)38-28(33)34)37-27(42)23(12-2-5-14-30)36-24(39)17-19-8-7-9-20(16-19)18-31/h7-9,16,21-23H,1-6,10-15,17-18,29-31H2,(H2,32,40)(H,35,41)(H,36,39)(H,37,42)(H4,33,34,38)/t21-,22+,23+/m1/s1" IY3 InChIKey InChI 1.06 ZUXRIDXDRJUBMD-VJBWXMMDSA-N IY3 SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@H](NC(=O)Cc1cccc(CN)c1)C(=O)N[C@@H](CCCCN)C(=O)NCCCC[C@@H](NC(N)=N)C(N)=O" IY3 SMILES CACTVS 3.385 "NCCCC[CH](NC(=O)Cc1cccc(CN)c1)C(=O)N[CH](CCCCN)C(=O)NCCCC[CH](NC(N)=N)C(N)=O" IY3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@H](CCCCNC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc1cccc(c1)CN)C(=O)N" IY3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)CN)CC(=O)NC(CCCCN)C(=O)NC(CCCCN)C(=O)NCCCCC(C(=O)N)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id IY3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[2-[3-(aminomethyl)phenyl]ethanoylamino]-6-azanyl-~{N}-[(2~{S})-6-azanyl-1-[[(5~{R})-6-azanyl-5-carbamimidamido-6-oxidanylidene-hexyl]amino]-1-oxidanylidene-hexan-2-yl]hexanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IY3 "Create component" 2022-04-20 PDBE IY3 "Modify descriptor" 2022-08-22 RCSB IY3 "Initial release" 2022-12-28 RCSB #