data_IY7 # _chem_comp.id IY7 _chem_comp.name "(2s)-6-[[(1r,2s)-2-(5-azanylpentanoylamino)-2,3-dihydro-1h-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H32 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-13 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IY7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4CF1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IY7 C2 C2 C 0 1 Y N N -8.468 40.849 13.203 0.285 5.251 0.049 C2 IY7 1 IY7 C3 C3 C 0 1 Y N N -9.304 41.148 12.157 -0.675 4.357 0.484 C3 IY7 2 IY7 C1 C1 C 0 1 Y N N -7.974 41.868 13.988 1.572 4.813 -0.199 C1 IY7 3 IY7 C4 C4 C 0 1 Y N N -9.637 42.460 11.902 -0.347 3.029 0.670 C4 IY7 4 IY7 C12 C12 C 0 1 Y N N -11.453 44.911 10.452 -1.150 0.907 -1.438 C12 IY7 5 IY7 C13 C13 C 0 1 Y N N -12.479 44.682 9.524 -2.521 0.712 -1.439 C13 IY7 6 IY7 C16 C16 C 0 1 Y N N -13.076 45.414 12.161 -0.896 -0.868 0.162 C16 IY7 7 IY7 C6 C6 C 0 1 Y N N -8.331 43.164 13.740 1.903 3.482 -0.013 C6 IY7 8 IY7 C5 C5 C 0 1 Y N N -9.160 43.468 12.701 0.943 2.588 0.423 C5 IY7 9 IY7 C11 C11 C 0 1 Y N N -11.750 45.271 11.780 -0.337 0.126 -0.647 C11 IY7 10 IY7 C14 C14 C 0 1 Y N N -13.790 44.819 9.931 -3.091 -0.271 -0.645 C14 IY7 11 IY7 C15 C15 C 0 1 Y N N -14.090 45.188 11.233 -2.283 -1.065 0.161 C15 IY7 12 IY7 C17 C17 C 0 1 N N N -13.450 45.804 13.586 -0.030 -1.706 1.011 C17 IY7 13 IY7 C30 C30 C 0 1 N N N -7.940 47.855 13.346 5.065 0.091 0.150 C30 IY7 14 IY7 C26 C26 C 0 1 N N N -17.006 45.598 6.670 -8.729 -0.747 -0.380 C26 IY7 15 IY7 C7 C7 C 0 1 N N N -7.912 44.374 14.488 3.220 2.762 -0.210 C7 IY7 16 IY7 C21 C21 C 0 1 N N N -16.320 44.525 10.885 -4.156 -2.444 0.643 C21 IY7 17 IY7 C9 C9 C 0 1 N N R -9.357 44.948 12.542 1.549 1.207 0.548 C9 IY7 18 IY7 C8 C8 C 0 1 N N S -8.183 45.431 13.426 3.075 1.435 0.564 C8 IY7 19 IY7 C22 C22 C 0 1 N N S -16.097 44.918 9.424 -5.010 -1.190 0.416 C22 IY7 20 IY7 C10 C10 C 0 1 N N N -10.722 45.537 12.869 1.155 0.344 -0.652 C10 IY7 21 IY7 C32 C32 C 0 1 N N N -8.452 49.046 14.116 5.782 -1.026 -0.563 C32 IY7 22 IY7 C25 C25 C 0 1 N N N -16.811 44.148 7.132 -7.318 -0.346 -0.036 C25 IY7 23 IY7 C24 C24 C 0 1 N N N -17.104 44.136 8.599 -6.443 -1.597 0.066 C24 IY7 24 IY7 C33 C33 C 0 1 N N N -7.959 50.312 13.452 7.227 -1.104 -0.066 C33 IY7 25 IY7 C34 C34 C 0 1 N N N -8.432 51.536 14.208 7.955 -2.239 -0.790 C34 IY7 26 IY7 C35 C35 C 0 1 N N N -8.181 52.722 13.308 9.399 -2.317 -0.293 C35 IY7 27 IY7 N29 N29 N 0 1 N N N -8.372 46.725 13.997 3.772 0.348 -0.129 N29 IY7 28 IY7 N36 N36 N 0 1 N N N -8.730 53.908 13.979 10.098 -3.406 -0.988 N36 IY7 29 IY7 O19 O19 O 0 1 N N N -14.310 45.150 14.249 0.564 -2.800 0.495 O19 IY7 30 IY7 O28 O28 O 0 1 N N N -16.114 46.130 5.929 -9.678 0.191 -0.522 O28 IY7 31 IY7 O18 O18 O 0 1 N N N -12.912 46.818 14.091 0.148 -1.410 2.176 O18 IY7 32 IY7 O31 O31 O 0 1 N N N -7.241 47.898 12.325 5.652 0.760 0.975 O31 IY7 33 IY7 O27 O27 O 0 1 N N N -18.082 46.131 7.033 -9.007 -1.914 -0.529 O27 IY7 34 IY7 O20 O20 O 0 1 N N N -15.425 45.300 11.694 -2.822 -2.028 0.952 O20 IY7 35 IY7 O23 O23 O 0 1 N N N -14.760 44.552 9.015 -4.440 -0.449 -0.669 O23 IY7 36 IY7 H2 H2 H 0 1 N N N -8.199 39.824 13.409 0.029 6.289 -0.102 H2 IY7 37 IY7 H3 H3 H 0 1 N N N -9.699 40.358 11.536 -1.681 4.697 0.679 H3 IY7 38 IY7 H1 H1 H 0 1 N N N -7.302 41.642 14.803 2.322 5.512 -0.539 H1 IY7 39 IY7 H4 H4 H 0 1 N N N -10.279 42.697 11.066 -1.097 2.331 1.011 H4 IY7 40 IY7 H12 H12 H 0 1 N N N -10.423 44.810 10.144 -0.716 1.672 -2.064 H12 IY7 41 IY7 H13 H13 H 0 1 N N N -12.247 44.403 8.507 -3.151 1.330 -2.063 H13 IY7 42 IY7 H71C H71C H 0 0 N N N -8.523 44.532 15.389 3.389 2.565 -1.269 H71C IY7 43 IY7 H72C H72C H 0 0 N N N -6.849 44.336 14.768 4.039 3.352 0.201 H72C IY7 44 IY7 H9 H9 H 0 1 N N N -9.118 45.213 11.502 1.226 0.735 1.476 H9 IY7 45 IY7 H101 H101 H 0 0 N N N -10.615 46.625 12.995 1.662 -0.619 -0.590 H101 IY7 46 IY7 H102 H102 H 0 0 N N N -11.081 45.093 13.809 1.445 0.848 -1.574 H102 IY7 47 IY7 H19 H19 H 0 1 N N N -14.431 45.556 15.099 1.061 -3.359 1.108 H19 IY7 48 IY7 H321 H321 H 0 0 N N N -9.552 49.037 14.121 5.276 -1.970 -0.360 H321 IY7 49 IY7 H322 H322 H 0 0 N N N -8.080 49.004 15.150 5.777 -0.835 -1.636 H322 IY7 50 IY7 H29 H29 H 0 1 N N N -8.826 46.811 14.884 3.302 -0.186 -0.788 H29 IY7 51 IY7 H251 H251 H 0 0 N N N -17.505 43.481 6.599 -6.926 0.309 -0.814 H251 IY7 52 IY7 H252 H252 H 0 0 N N N -15.776 43.824 6.947 -7.313 0.180 0.919 H252 IY7 53 IY7 H28 H28 H 0 1 N N N -16.386 47.007 5.685 -10.568 -0.114 -0.743 H28 IY7 54 IY7 H8 H8 H 0 1 N N N -7.295 45.469 12.778 3.440 1.541 1.586 H8 IY7 55 IY7 H211 H211 H 0 0 N N N -17.361 44.735 11.173 -4.563 -3.021 1.473 H211 IY7 56 IY7 H212 H212 H 0 0 N N N -16.111 43.453 11.019 -4.151 -3.054 -0.261 H212 IY7 57 IY7 H22 H22 H 0 1 N N N -16.266 45.998 9.298 -5.012 -0.578 1.319 H22 IY7 58 IY7 H241 H241 H 0 0 N N N -17.103 43.092 8.946 -6.448 -2.123 -0.888 H241 IY7 59 IY7 H242 H242 H 0 0 N N N -18.100 44.574 8.759 -6.835 -2.252 0.844 H242 IY7 60 IY7 H331 H331 H 0 0 N N N -6.859 50.304 13.432 7.733 -0.160 -0.269 H331 IY7 61 IY7 H332 H332 H 0 0 N N N -8.345 50.353 12.423 7.232 -1.296 1.007 H332 IY7 62 IY7 H341 H341 H 0 0 N N N -9.505 51.451 14.434 7.449 -3.183 -0.587 H341 IY7 63 IY7 H342 H342 H 0 0 N N N -7.867 51.645 15.146 7.949 -2.047 -1.863 H342 IY7 64 IY7 H351 H351 H 0 0 N N N -7.100 52.849 13.146 9.905 -1.373 -0.496 H351 IY7 65 IY7 H352 H352 H 0 0 N N N -8.682 52.572 12.340 9.405 -2.508 0.780 H352 IY7 66 IY7 H361 H361 H 0 0 N N N -8.580 54.715 13.407 11.055 -3.478 -0.677 H361 IY7 67 IY7 H362 H362 H 0 0 N N N -9.711 53.783 14.127 9.612 -4.282 -0.868 H362 IY7 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IY7 C2 C3 SING Y N 1 IY7 C2 C1 DOUB Y N 2 IY7 C3 C4 DOUB Y N 3 IY7 C1 C6 SING Y N 4 IY7 C4 C5 SING Y N 5 IY7 C12 C13 SING Y N 6 IY7 C12 C11 DOUB Y N 7 IY7 C13 C14 DOUB Y N 8 IY7 C16 C11 SING Y N 9 IY7 C16 C15 DOUB Y N 10 IY7 C16 C17 SING N N 11 IY7 C6 C5 DOUB Y N 12 IY7 C6 C7 SING N N 13 IY7 C5 C9 SING N N 14 IY7 C11 C10 SING N N 15 IY7 C14 C15 SING Y N 16 IY7 C14 O23 SING N N 17 IY7 C15 O20 SING N N 18 IY7 C17 O19 SING N N 19 IY7 C17 O18 DOUB N N 20 IY7 C30 C32 SING N N 21 IY7 C30 N29 SING N N 22 IY7 C30 O31 DOUB N N 23 IY7 C26 C25 SING N N 24 IY7 C26 O28 SING N N 25 IY7 C26 O27 DOUB N N 26 IY7 C7 C8 SING N N 27 IY7 C21 C22 SING N N 28 IY7 C21 O20 SING N N 29 IY7 C9 C8 SING N N 30 IY7 C9 C10 SING N N 31 IY7 C8 N29 SING N N 32 IY7 C22 C24 SING N N 33 IY7 C22 O23 SING N N 34 IY7 C32 C33 SING N N 35 IY7 C25 C24 SING N N 36 IY7 C33 C34 SING N N 37 IY7 C34 C35 SING N N 38 IY7 C35 N36 SING N N 39 IY7 C2 H2 SING N N 40 IY7 C3 H3 SING N N 41 IY7 C1 H1 SING N N 42 IY7 C4 H4 SING N N 43 IY7 C12 H12 SING N N 44 IY7 C13 H13 SING N N 45 IY7 C7 H71C SING N N 46 IY7 C7 H72C SING N N 47 IY7 C9 H9 SING N N 48 IY7 C10 H101 SING N N 49 IY7 C10 H102 SING N N 50 IY7 O19 H19 SING N N 51 IY7 C32 H321 SING N N 52 IY7 C32 H322 SING N N 53 IY7 N29 H29 SING N N 54 IY7 C25 H251 SING N N 55 IY7 C25 H252 SING N N 56 IY7 O28 H28 SING N N 57 IY7 C8 H8 SING N N 58 IY7 C21 H211 SING N N 59 IY7 C21 H212 SING N N 60 IY7 C22 H22 SING N N 61 IY7 C24 H241 SING N N 62 IY7 C24 H242 SING N N 63 IY7 C33 H331 SING N N 64 IY7 C33 H332 SING N N 65 IY7 C34 H341 SING N N 66 IY7 C34 H342 SING N N 67 IY7 C35 H351 SING N N 68 IY7 C35 H352 SING N N 69 IY7 N36 H361 SING N N 70 IY7 N36 H362 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IY7 SMILES ACDLabs 12.01 "O=C(O)c2c(ccc1OC(COc12)CCC(=O)O)CC4c3ccccc3CC4NC(=O)CCCCN" IY7 InChI InChI 1.03 "InChI=1S/C27H32N2O7/c28-12-4-3-7-23(30)29-21-14-16-5-1-2-6-19(16)20(21)13-17-8-10-22-26(25(17)27(33)34)35-15-18(36-22)9-11-24(31)32/h1-2,5-6,8,10,18,20-21H,3-4,7,9,11-15,28H2,(H,29,30)(H,31,32)(H,33,34)/t18-,20+,21-/m0/s1" IY7 InChIKey InChI 1.03 XXPDTTOFZJRAQQ-TYPHKJRUSA-N IY7 SMILES_CANONICAL CACTVS 3.385 "NCCCCC(=O)N[C@H]1Cc2ccccc2[C@H]1Cc3ccc4O[C@@H](CCC(O)=O)COc4c3C(O)=O" IY7 SMILES CACTVS 3.385 "NCCCCC(=O)N[CH]1Cc2ccccc2[CH]1Cc3ccc4O[CH](CCC(O)=O)COc4c3C(O)=O" IY7 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)C[C@@H]([C@@H]2Cc3ccc4c(c3C(=O)O)OC[C@@H](O4)CCC(=O)O)NC(=O)CCCCN" IY7 SMILES "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)CC(C2Cc3ccc4c(c3C(=O)O)OCC(O4)CCC(=O)O)NC(=O)CCCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier IY7 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-6-({(1R,2S)-2-[(5-aminopentanoyl)amino]-2,3-dihydro-1H-inden-1-yl}methyl)-2-(2-carboxyethyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" IY7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-6-[[(1R,2S)-2-(5-azanylpentanoylamino)-2,3-dihydro-1H-inden-1-yl]methyl]-2-(3-hydroxy-3-oxopropyl)-2,3-dihydro-1,4-benzodioxine-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IY7 "Create component" 2013-11-13 EBI IY7 "Initial release" 2013-12-18 RCSB IY7 "Modify descriptor" 2014-09-05 RCSB #