data_IY8 # _chem_comp.id IY8 _chem_comp.name "methoxy-[(~{E},3~{R})-3-[(2~{R})-1-methoxy-1,3-bis(oxidanylidene)butan-2-yl]tridec-11-enyl]phosphinous acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H35 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-04-20 _chem_comp.pdbx_modified_date 2022-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 390.451 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZM1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IY8 C12 C1 C 0 1 N N N 22.204 66.328 -8.511 1.444 1.668 1.550 C12 IY8 1 IY8 C10 C2 C 0 1 N N N 18.595 67.906 -8.756 0.200 -0.656 0.515 C10 IY8 2 IY8 C21 C3 C 0 1 N N N 15.207 64.612 -8.488 -4.784 -0.978 0.667 C21 IY8 3 IY8 C25 C4 C 0 1 N N N 10.431 63.805 -10.107 -9.436 -1.444 -0.354 C25 IY8 4 IY8 C23 C5 C 0 1 N N N 12.751 64.439 -9.198 -7.276 -1.139 0.743 C23 IY8 5 IY8 C19 C6 C 0 1 N N N 16.362 66.790 -9.085 -2.292 -0.817 0.591 C19 IY8 6 IY8 O05 O1 O 0 1 N N N 19.486 71.497 -4.628 6.610 -0.553 -1.008 O05 IY8 7 IY8 C15 C7 C 0 1 N N N 18.300 72.301 -4.315 7.955 -0.990 -0.802 C15 IY8 8 IY8 C09 C8 C 0 1 N N R 20.870 66.826 -9.058 1.469 1.448 0.059 C09 IY8 9 IY8 C14 C9 C 0 1 N N N 22.196 65.253 -7.484 2.736 1.814 2.312 C14 IY8 10 IY8 C13 C10 C 0 1 N N N 21.164 67.577 -10.337 0.293 2.149 -0.571 C13 IY8 11 IY8 C11 C11 C 0 1 N N N 20.541 69.000 -7.643 2.680 -0.731 0.219 C11 IY8 12 IY8 C16 C12 C 0 1 N N N 21.657 67.236 -12.602 -1.025 2.801 -2.447 C16 IY8 13 IY8 O04 O2 O 0 1 N N N 23.239 66.723 -8.966 0.389 1.732 2.134 O04 IY8 14 IY8 C18 C13 C 0 1 N N N 17.852 66.665 -9.158 -1.105 -0.122 -0.079 C18 IY8 15 IY8 O06 O3 O 0 1 N N N 21.470 68.718 -10.392 -0.432 2.839 0.105 O06 IY8 16 IY8 C20 C14 C 0 1 N N N 15.618 65.567 -9.574 -3.597 -0.283 -0.003 C20 IY8 17 IY8 C22 C15 C 0 1 N N N 14.052 63.725 -8.877 -6.089 -0.444 0.073 C22 IY8 18 IY8 C26 C16 C 0 1 N N N 9.253 62.831 -10.039 -10.722 -0.918 -0.939 C26 IY8 19 IY8 C24 C17 C 0 1 N N N 11.564 63.510 -9.153 -8.561 -0.613 0.158 C24 IY8 20 IY8 C03 C18 C 0 1 N N N 19.936 69.443 -6.337 3.846 -0.239 -0.640 C03 IY8 21 IY8 C08 C19 C 0 1 N N R 19.951 67.652 -8.122 1.388 -0.051 -0.237 C08 IY8 22 IY8 O02 O4 O 0 1 N N N 20.951 66.826 -11.399 0.053 2.007 -1.884 O02 IY8 23 IY8 O07 O5 O 0 1 N N N 19.225 71.937 -7.170 5.172 -2.711 -0.581 O07 IY8 24 IY8 P01 P1 P 0 1 N N N 19.957 71.217 -6.063 5.357 -1.159 -0.199 P01 IY8 25 IY8 H1 H1 H 0 1 N N N 18.746 68.522 -9.655 0.259 -0.381 1.568 H1 IY8 26 IY8 H2 H2 H 0 1 N N N 17.976 68.458 -8.033 0.225 -1.741 0.421 H2 IY8 27 IY8 H3 H3 H 0 1 N N N 16.068 63.974 -8.240 -4.720 -2.053 0.496 H3 IY8 28 IY8 H4 H4 H 0 1 N N N 14.916 65.196 -7.602 -4.764 -0.779 1.738 H4 IY8 29 IY8 H5 H5 H 0 1 N N N 10.451 64.643 -10.788 -9.236 -2.505 -0.356 H5 IY8 30 IY8 H6 H6 H 0 1 N N N 12.824 64.871 -10.207 -7.212 -2.214 0.572 H6 IY8 31 IY8 H7 H7 H 0 1 N N N 12.599 65.244 -8.464 -7.256 -0.940 1.814 H7 IY8 32 IY8 H8 H8 H 0 1 N N N 16.056 67.650 -9.699 -2.227 -1.891 0.420 H8 IY8 33 IY8 H9 H9 H 0 1 N N N 16.081 66.970 -8.037 -2.272 -0.618 1.663 H9 IY8 34 IY8 H10 H10 H 0 1 N N N 18.171 72.356 -3.224 8.240 -0.813 0.235 H10 IY8 35 IY8 H11 H11 H 0 1 N N N 18.427 73.315 -4.721 8.028 -2.055 -1.022 H11 IY8 36 IY8 H12 H12 H 0 1 N N N 17.412 71.834 -4.766 8.622 -0.436 -1.462 H12 IY8 37 IY8 H13 H13 H 0 1 N N N 20.296 65.932 -9.342 2.395 1.850 -0.352 H13 IY8 38 IY8 H14 H14 H 0 1 N N N 23.229 64.945 -7.267 3.065 2.853 2.273 H14 IY8 39 IY8 H15 H15 H 0 1 N N N 21.725 65.629 -6.564 2.581 1.520 3.350 H15 IY8 40 IY8 H16 H16 H 0 1 N N N 21.627 64.390 -7.861 3.497 1.175 1.863 H16 IY8 41 IY8 H17 H17 H 0 1 N N N 21.627 68.887 -7.512 2.580 -1.811 0.111 H17 IY8 42 IY8 H18 H18 H 0 1 N N N 20.342 69.767 -8.406 2.871 -0.487 1.264 H18 IY8 43 IY8 H19 H19 H 0 1 N N N 21.412 66.548 -13.424 -1.961 2.548 -1.948 H19 IY8 44 IY8 H20 H20 H 0 1 N N N 21.353 68.257 -12.876 -0.811 3.859 -2.301 H20 IY8 45 IY8 H21 H21 H 0 1 N N N 22.741 67.214 -12.416 -1.113 2.591 -3.513 H21 IY8 46 IY8 H22 H22 H 0 1 N N N 18.162 65.846 -8.492 -1.169 0.953 0.092 H22 IY8 47 IY8 H23 H23 H 0 1 N N N 18.127 66.419 -10.194 -1.124 -0.321 -1.150 H23 IY8 48 IY8 H24 H24 H 0 1 N N N 14.711 65.903 -10.097 -3.616 -0.482 -1.074 H24 IY8 49 IY8 H25 H25 H 0 1 N N N 16.269 65.027 -10.278 -3.661 0.792 0.168 H25 IY8 50 IY8 H26 H26 H 0 1 N N N 13.861 63.034 -8.043 -6.153 0.630 0.244 H26 IY8 51 IY8 H27 H27 H 0 1 N N N 14.351 63.152 -9.767 -6.109 -0.643 -0.998 H27 IY8 52 IY8 H28 H28 H 0 1 N N N 8.486 63.131 -10.768 -11.281 -0.387 -0.168 H28 IY8 53 IY8 H29 H29 H 0 1 N N N 9.604 61.815 -10.273 -10.495 -0.236 -1.758 H29 IY8 54 IY8 H30 H30 H 0 1 N N N 8.823 62.846 -9.027 -11.318 -1.750 -1.313 H30 IY8 55 IY8 H31 H31 H 0 1 N N N 11.526 62.673 -8.471 -8.761 0.448 0.160 H31 IY8 56 IY8 H32 H32 H 0 1 N N N 18.890 69.105 -6.312 3.616 -0.403 -1.693 H32 IY8 57 IY8 H33 H33 H 0 1 N N N 20.496 68.964 -5.520 4.004 0.825 -0.464 H33 IY8 58 IY8 H34 H34 H 0 1 N N N 19.780 67.041 -7.223 1.255 -0.203 -1.308 H34 IY8 59 IY8 H35 H35 H 0 1 N N N 19.853 72.371 -7.736 5.007 -2.868 -1.521 H35 IY8 60 IY8 O1 O6 O 0 1 N N N 21.487 71.448 -6.251 5.603 -1.035 1.256 O1 IY8 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IY8 C16 O02 SING N N 1 IY8 O02 C13 SING N N 2 IY8 O06 C13 DOUB N N 3 IY8 C13 C09 SING N N 4 IY8 C25 C26 SING N N 5 IY8 C25 C24 DOUB N E 6 IY8 C20 C19 SING N N 7 IY8 C20 C21 SING N N 8 IY8 C23 C24 SING N N 9 IY8 C23 C22 SING N N 10 IY8 C18 C19 SING N N 11 IY8 C18 C10 SING N N 12 IY8 C09 C12 SING N N 13 IY8 C09 C08 SING N N 14 IY8 O04 C12 DOUB N N 15 IY8 C22 C21 SING N N 16 IY8 C10 C08 SING N N 17 IY8 C12 C14 SING N N 18 IY8 C08 C11 SING N N 19 IY8 C11 C03 SING N N 20 IY8 O07 P01 SING N N 21 IY8 C03 P01 SING N N 22 IY8 P01 O05 SING N N 23 IY8 O05 C15 SING N N 24 IY8 C10 H1 SING N N 25 IY8 C10 H2 SING N N 26 IY8 C21 H3 SING N N 27 IY8 C21 H4 SING N N 28 IY8 C25 H5 SING N N 29 IY8 C23 H6 SING N N 30 IY8 C23 H7 SING N N 31 IY8 C19 H8 SING N N 32 IY8 C19 H9 SING N N 33 IY8 C15 H10 SING N N 34 IY8 C15 H11 SING N N 35 IY8 C15 H12 SING N N 36 IY8 C09 H13 SING N N 37 IY8 C14 H14 SING N N 38 IY8 C14 H15 SING N N 39 IY8 C14 H16 SING N N 40 IY8 C11 H17 SING N N 41 IY8 C11 H18 SING N N 42 IY8 C16 H19 SING N N 43 IY8 C16 H20 SING N N 44 IY8 C16 H21 SING N N 45 IY8 C18 H22 SING N N 46 IY8 C18 H23 SING N N 47 IY8 C20 H24 SING N N 48 IY8 C20 H25 SING N N 49 IY8 C22 H26 SING N N 50 IY8 C22 H27 SING N N 51 IY8 C26 H28 SING N N 52 IY8 C26 H29 SING N N 53 IY8 C26 H30 SING N N 54 IY8 C24 H31 SING N N 55 IY8 C03 H32 SING N N 56 IY8 C03 H33 SING N N 57 IY8 C08 H34 SING N N 58 IY8 O07 H35 SING N N 59 IY8 O1 P01 DOUB N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IY8 InChI InChI 1.06 "InChI=1S/C19H35O6P/c1-5-6-7-8-9-10-11-12-13-17(14-15-26(22,23)25-4)18(16(2)20)19(21)24-3/h5-6,17-18H,7-15H2,1-4H3,(H,22,23)/b6-5+/t17-,18+/m1/s1" IY8 InChIKey InChI 1.06 KFPPYXMTKZSOKI-VGRIIWOTSA-N IY8 SMILES_CANONICAL CACTVS 3.385 "COC(=O)[C@H]([C@H](CCCCCCC/C=C/C)CC[P](O)(=O)OC)C(C)=O" IY8 SMILES CACTVS 3.385 "COC(=O)[CH]([CH](CCCCCCCC=CC)CC[P](O)(=O)OC)C(C)=O" IY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C=C/CCCCCCC[C@H](CCP(=O)(O)OC)[C@H](C(=O)C)C(=O)OC" IY8 SMILES "OpenEye OEToolkits" 2.0.7 "CC=CCCCCCCCC(CCP(=O)(O)OC)C(C(=O)C)C(=O)OC" # _pdbx_chem_comp_identifier.comp_id IY8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "methoxy-[(~{E},3~{R})-3-[(2~{R})-1-methoxy-1,3-bis(oxidanylidene)butan-2-yl]tridec-11-enyl]phosphinic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IY8 "Create component" 2022-04-20 PDBE IY8 "Modify descriptor" 2022-08-22 RCSB IY8 "Initial release" 2022-09-28 RCSB #