data_IY9 # _chem_comp.id IY9 _chem_comp.name "[5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-furan-2-yl]methyl dihydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H10 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-02 _chem_comp.pdbx_modified_date 2023-07-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 303.165 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IY9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7YOR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IY9 C13 C1 C 0 1 Y N N 63.783 90.398 53.448 -1.017 1.724 0.041 C13 IY9 1 IY9 C1 C2 C 0 1 N N N 67.067 94.255 52.057 -5.170 -1.052 0.131 C1 IY9 2 IY9 C2 C3 C 0 1 N N N 67.640 93.481 53.129 -4.127 -1.905 -0.282 C2 IY9 3 IY9 C3 C4 C 0 1 N N N 66.856 92.513 53.714 -2.874 -1.402 -0.394 C3 IY9 4 IY9 C5 C5 C 0 1 N N N 64.996 93.059 52.220 -3.673 0.701 0.288 C5 IY9 5 IY9 C9 C6 C 0 1 Y N N 64.756 91.239 53.943 -1.370 0.443 -0.215 C9 IY9 6 IY9 C11 C7 C 0 1 Y N N 64.058 90.027 55.675 0.791 0.599 -0.587 C11 IY9 7 IY9 C12 C8 C 0 1 Y N N 63.339 89.616 54.562 0.374 1.821 -0.199 C12 IY9 8 IY9 C14 C9 C 0 1 N N N 64.032 89.547 57.158 2.204 0.224 -0.950 C14 IY9 9 IY9 N4 N1 N 0 1 N N N 65.558 92.253 53.311 -2.655 -0.087 -0.104 N4 IY9 10 IY9 N6 N2 N 0 1 N N N 65.804 94.061 51.616 -4.910 0.221 0.402 N6 IY9 11 IY9 N7 N3 N 0 1 N N N 67.805 95.262 51.415 -6.454 -1.535 0.247 N7 IY9 12 IY9 O8 O1 O 0 1 N N N 63.860 92.857 51.858 -3.459 1.874 0.544 O8 IY9 13 IY9 O10 O2 O 0 1 Y N N 64.921 91.018 55.295 -0.271 -0.231 -0.594 O10 IY9 14 IY9 O15 O3 O 0 1 N N N 62.406 88.665 54.544 1.145 2.936 -0.065 O15 IY9 15 IY9 O16 O4 O 0 1 N N N 65.105 88.767 57.385 2.895 -0.219 0.220 O16 IY9 16 IY9 O18 O5 O 0 1 N N N 66.341 89.488 59.554 4.839 -1.249 1.659 O18 IY9 17 IY9 O19 O6 O 0 1 N N N 66.479 90.899 57.408 4.600 -1.778 -0.797 O19 IY9 18 IY9 O20 O7 O 0 1 N N N 67.745 88.688 57.528 5.378 0.544 -0.186 O20 IY9 19 IY9 P17 P1 P 0 1 N N N 66.627 89.555 58.071 4.432 -0.699 0.202 P17 IY9 20 IY9 H1 H1 H 0 1 N N N 63.428 90.341 52.429 -1.672 2.521 0.363 H1 IY9 21 IY9 H2 H2 H 0 1 N N N 68.652 93.655 53.463 -4.323 -2.943 -0.506 H2 IY9 22 IY9 H3 H3 H 0 1 N N N 67.272 91.931 54.523 -2.058 -2.036 -0.707 H3 IY9 23 IY9 H4 H4 H 0 1 N N N 64.061 90.419 57.828 2.189 -0.578 -1.688 H4 IY9 24 IY9 H5 H5 H 0 1 N N N 63.113 88.972 57.344 2.715 1.092 -1.367 H5 IY9 25 IY9 H6 H6 H 0 1 N N N 67.391 95.790 50.674 -6.643 -2.464 0.044 H6 IY9 26 IY9 H7 H7 H 0 1 N N N 68.745 95.451 51.699 -7.170 -0.945 0.531 H7 IY9 27 IY9 H8 H8 H 0 1 N N N 62.304 88.304 55.417 1.528 3.046 0.816 H8 IY9 28 IY9 H9 H9 H 0 1 N N N 66.096 90.350 59.869 5.754 -1.556 1.722 H9 IY9 29 IY9 H10 H10 H 0 1 N N N 68.192 89.149 56.828 5.319 1.290 0.426 H10 IY9 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IY9 N7 C1 SING N N 1 IY9 N6 C1 DOUB N N 2 IY9 N6 C5 SING N N 3 IY9 O8 C5 DOUB N N 4 IY9 C1 C2 SING N N 5 IY9 C5 N4 SING N N 6 IY9 C2 C3 DOUB N N 7 IY9 N4 C3 SING N N 8 IY9 N4 C9 SING N N 9 IY9 C13 C9 DOUB Y N 10 IY9 C13 C12 SING Y N 11 IY9 C9 O10 SING Y N 12 IY9 O15 C12 SING N N 13 IY9 C12 C11 DOUB Y N 14 IY9 O10 C11 SING Y N 15 IY9 C11 C14 SING N N 16 IY9 C14 O16 SING N N 17 IY9 O16 P17 SING N N 18 IY9 O19 P17 DOUB N N 19 IY9 O20 P17 SING N N 20 IY9 P17 O18 SING N N 21 IY9 C13 H1 SING N N 22 IY9 C2 H2 SING N N 23 IY9 C3 H3 SING N N 24 IY9 C14 H4 SING N N 25 IY9 C14 H5 SING N N 26 IY9 N7 H6 SING N N 27 IY9 N7 H7 SING N N 28 IY9 O15 H8 SING N N 29 IY9 O18 H9 SING N N 30 IY9 O20 H10 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IY9 InChI InChI 1.06 "InChI=1S/C9H10N3O7P/c10-7-1-2-12(9(14)11-7)8-3-5(13)6(19-8)4-18-20(15,16)17/h1-3,13H,4H2,(H2,10,11,14)(H2,15,16,17)" IY9 InChIKey InChI 1.06 ZPERLPSVNPNRDZ-UHFFFAOYSA-N IY9 SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)N(C=C1)c2oc(CO[P](O)(O)=O)c(O)c2" IY9 SMILES CACTVS 3.385 "NC1=NC(=O)N(C=C1)c2oc(CO[P](O)(O)=O)c(O)c2" IY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c(oc1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" IY9 SMILES "OpenEye OEToolkits" 2.0.7 "c1c(c(oc1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id IY9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-furan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IY9 "Create component" 2022-08-02 PDBJ IY9 "Initial release" 2023-08-02 RCSB #