data_IYL # _chem_comp.id IYL _chem_comp.name "[9-[2-carboxy-5-[2-[2-(5-oxidanylpentoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H42 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-04-20 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 604.713 _chem_comp.one_letter_code ? _chem_comp.three_letter_code IYL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZIZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal IYL N1 N1 N 0 1 N N N -3.290 19.508 -28.892 2.270 -2.732 1.304 N1 IYL 1 IYL C7 C1 C 0 1 Y N N 0.576 16.684 -29.333 -1.792 -0.616 -0.324 C7 IYL 2 IYL C8 C2 C 0 1 Y N N 1.105 17.446 -30.396 -1.543 -1.112 -1.620 C8 IYL 3 IYL N2 N2 N 0 1 N N N 1.627 10.679 -31.782 -8.097 -2.146 0.236 N2 IYL 4 IYL C9 C3 C 0 1 Y N N 0.329 18.467 -30.949 -0.410 -1.886 -1.860 C9 IYL 5 IYL O1 O1 O 0 1 N N N -7.983 20.489 -24.623 7.520 -1.849 0.016 O1 IYL 6 IYL C1 C4 C 0 1 N N N 2.748 16.138 -22.504 -3.928 6.430 0.998 C1 IYL 7 IYL O5 O2 O 0 1 N N N 2.569 17.313 -32.240 -3.471 -0.140 -2.510 O5 IYL 8 IYL C5 C5 C 0 1 N N N 1.648 15.386 -27.413 -2.903 1.591 0.119 C5 IYL 9 IYL C6 C6 C 0 1 N N N 1.250 15.464 -28.763 -2.993 0.199 -0.061 C6 IYL 10 IYL C4 C7 C 0 1 N N N 1.579 16.456 -26.540 -1.654 2.246 0.046 C4 IYL 11 IYL O4 O3 O 0 1 N N N 3.405 16.873 -30.246 -2.244 -1.289 -3.958 O4 IYL 12 IYL C3 C8 C 0 1 N N N 1.961 16.331 -25.212 -1.584 3.586 0.215 C3 IYL 13 IYL O3 O4 O 0 1 N N N -3.380 17.355 -28.251 0.970 -1.559 2.668 O3 IYL 14 IYL C2 C9 C 0 1 N N N 2.473 15.125 -24.729 -2.800 4.355 0.474 C2 IYL 15 IYL N N3 N 1 1 N N N 2.865 15.005 -23.403 -2.728 5.670 0.639 N IYL 16 IYL C C10 C 0 1 N N N 3.346 13.736 -22.884 -1.449 6.362 0.461 C IYL 17 IYL O O5 O 0 1 N N N -5.759 20.689 -26.474 5.106 -3.139 0.893 O IYL 18 IYL C10 C11 C 0 1 Y N N -0.918 18.776 -30.432 0.468 -2.166 -0.833 C10 IYL 19 IYL C11 C12 C 0 1 Y N N -1.434 18.048 -29.380 0.229 -1.677 0.454 C11 IYL 20 IYL C12 C13 C 0 1 N N N -2.790 18.273 -28.805 1.177 -1.983 1.549 C12 IYL 21 IYL C13 C14 C 0 1 N N N -4.612 19.826 -28.369 3.209 -3.034 2.387 C13 IYL 22 IYL C14 C15 C 0 1 N N N -4.489 20.263 -26.926 4.353 -3.893 1.845 C14 IYL 23 IYL C15 C16 C 0 1 N N N -5.718 21.037 -25.077 6.205 -3.853 0.323 C15 IYL 24 IYL C16 C17 C 0 1 N N N -7.029 21.534 -24.594 6.934 -2.953 -0.676 C16 IYL 25 IYL C17 C18 C 0 1 N N N -8.120 19.768 -23.418 8.229 -0.942 -0.830 C17 IYL 26 IYL C18 C19 C 0 1 N N N -9.370 18.917 -23.545 8.810 0.194 0.013 C18 IYL 27 IYL C19 C20 C 0 1 N N N -10.674 19.675 -23.755 9.570 1.165 -0.893 C19 IYL 28 IYL C20 C21 C 0 1 N N N -11.896 18.748 -23.884 10.151 2.302 -0.049 C20 IYL 29 IYL C21 C22 C 0 1 N N N -13.185 19.407 -24.048 10.910 3.273 -0.956 C21 IYL 30 IYL C22 C23 C 0 1 Y N N -0.694 17.001 -28.842 -0.900 -0.903 0.709 C22 IYL 31 IYL C23 C24 C 0 1 N N N 2.422 17.099 -31.029 -2.483 -0.814 -2.721 C23 IYL 32 IYL C24 C25 C 0 1 N N N 2.567 14.045 -25.605 -4.049 3.704 0.548 C24 IYL 33 IYL C25 C26 C 0 1 N N N 2.154 14.170 -26.919 -4.124 2.353 0.377 C25 IYL 34 IYL C26 C27 C 0 1 Y N N 1.861 13.102 -29.027 -5.447 0.394 0.275 C26 IYL 35 IYL C27 C28 C 0 1 Y N N 1.348 14.267 -29.602 -4.323 -0.416 0.022 C27 IYL 36 IYL C28 C29 C 0 1 Y N N 0.918 14.196 -30.922 -4.477 -1.798 -0.156 C28 IYL 37 IYL C29 C30 C 0 1 Y N N 1.003 13.018 -31.648 -5.717 -2.359 -0.084 C29 IYL 38 IYL C30 C31 C 0 1 Y N N 1.517 11.856 -31.062 -6.837 -1.562 0.166 C30 IYL 39 IYL C31 C32 C 0 1 N N N 1.240 10.624 -33.175 -9.288 -1.303 0.370 C31 IYL 40 IYL C32 C33 C 0 1 N N N 1.712 9.410 -31.082 -8.233 -3.603 0.177 C32 IYL 41 IYL C33 C34 C 0 1 Y N N 1.934 11.919 -29.737 -6.702 -0.192 0.344 C33 IYL 42 IYL O2 O6 O 0 1 N N N -14.222 18.451 -24.172 11.453 4.334 -0.168 O2 IYL 43 IYL O6 O7 O 0 1 N N N 2.278 13.051 -27.717 -5.318 1.727 0.448 O6 IYL 44 IYL H1 H1 H 0 1 N N N -2.747 20.228 -29.324 2.434 -3.074 0.411 H1 IYL 45 IYL H2 H2 H 0 1 N N N 0.707 19.024 -31.793 -0.218 -2.267 -2.852 H2 IYL 46 IYL H3 H3 H 0 1 N N N 3.105 15.852 -21.504 -4.013 6.482 2.084 H3 IYL 47 IYL H4 H4 H 0 1 N N N 3.355 16.972 -22.885 -3.855 7.438 0.591 H4 IYL 48 IYL H5 H5 H 0 1 N N N 1.695 16.449 -22.442 -4.808 5.935 0.588 H5 IYL 49 IYL H6 H6 H 0 1 N N N 1.220 17.409 -26.899 -0.756 1.677 -0.145 H6 IYL 50 IYL H7 H7 H 0 1 N N N 4.216 16.899 -30.740 -2.887 -1.067 -4.646 H7 IYL 51 IYL H8 H8 H 0 1 N N N 1.861 17.175 -24.545 -0.629 4.087 0.160 H8 IYL 52 IYL H9 H9 H 0 1 N N N 3.604 13.848 -21.821 -1.045 6.132 -0.525 H9 IYL 53 IYL H10 H10 H 0 1 N N N 2.560 12.974 -22.992 -1.602 7.438 0.550 H10 IYL 54 IYL H11 H11 H 0 1 N N N 4.238 13.424 -23.447 -0.747 6.031 1.227 H11 IYL 55 IYL H12 H12 H 0 1 N N N -1.489 19.590 -30.854 1.346 -2.766 -1.025 H12 IYL 56 IYL H13 H13 H 0 1 N N N -5.056 20.639 -28.962 3.611 -2.105 2.789 H13 IYL 57 IYL H14 H14 H 0 1 N N N -5.255 18.935 -28.429 2.690 -3.577 3.177 H14 IYL 58 IYL H15 H15 H 0 1 N N N -4.141 19.420 -26.312 3.945 -4.782 1.364 H15 IYL 59 IYL H16 H16 H 0 1 N N N -3.771 21.093 -26.850 5.004 -4.193 2.668 H16 IYL 60 IYL H17 H17 H 0 1 N N N -5.439 20.145 -24.496 6.893 -4.151 1.114 H17 IYL 61 IYL H18 H18 H 0 1 N N N -4.963 21.823 -24.928 5.834 -4.740 -0.190 H18 IYL 62 IYL H19 H19 H 0 1 N N N -6.922 21.901 -23.563 6.225 -2.583 -1.417 H19 IYL 63 IYL H20 H20 H 0 1 N N N -7.369 22.355 -25.242 7.716 -3.525 -1.176 H20 IYL 64 IYL H21 H21 H 0 1 N N N -7.241 19.126 -23.261 9.038 -1.472 -1.333 H21 IYL 65 IYL H22 H22 H 0 1 N N N -8.222 20.464 -22.572 7.547 -0.530 -1.574 H22 IYL 66 IYL H23 H23 H 0 1 N N N -9.469 18.325 -22.623 8.001 0.724 0.516 H23 IYL 67 IYL H24 H24 H 0 1 N N N -9.232 18.241 -24.402 9.492 -0.217 0.757 H24 IYL 68 IYL H25 H25 H 0 1 N N N -10.588 20.271 -24.675 10.379 0.636 -1.396 H25 IYL 69 IYL H26 H26 H 0 1 N N N -10.832 20.345 -22.897 8.888 1.577 -1.637 H26 IYL 70 IYL H27 H27 H 0 1 N N N -11.947 18.131 -22.975 9.342 2.832 0.453 H27 IYL 71 IYL H28 H28 H 0 1 N N N -11.736 18.100 -24.759 10.833 1.890 0.694 H28 IYL 72 IYL H29 H29 H 0 1 N N N -13.159 20.031 -24.953 11.719 2.743 -1.459 H29 IYL 73 IYL H30 H30 H 0 1 N N N -13.381 20.041 -23.171 10.228 3.684 -1.700 H30 IYL 74 IYL H31 H31 H 0 1 N N N -1.108 16.422 -28.030 -1.087 -0.530 1.705 H31 IYL 75 IYL H32 H32 H 0 1 N N N 2.965 13.104 -25.255 -4.945 4.275 0.739 H32 IYL 76 IYL H33 H33 H 0 1 N N N 0.509 15.078 -31.392 -3.614 -2.417 -0.350 H33 IYL 77 IYL H34 H34 H 0 1 N N N 0.670 12.997 -32.675 -5.834 -3.423 -0.221 H34 IYL 78 IYL H35 H35 H 0 1 N N N 1.212 11.643 -33.589 -9.503 -1.144 1.426 H35 IYL 79 IYL H36 H36 H 0 1 N N N 1.970 10.021 -33.735 -9.110 -0.343 -0.114 H36 IYL 80 IYL H37 H37 H 0 1 N N N 0.243 10.166 -33.261 -10.137 -1.797 -0.104 H37 IYL 81 IYL H38 H38 H 0 1 N N N 2.013 9.586 -30.039 -7.258 -4.052 -0.012 H38 IYL 82 IYL H39 H39 H 0 1 N N N 0.730 8.914 -31.102 -8.624 -3.970 1.125 H39 IYL 83 IYL H40 H40 H 0 1 N N N 2.457 8.768 -31.575 -8.918 -3.871 -0.627 H40 IYL 84 IYL H41 H41 H 0 1 N N N 2.320 11.032 -29.257 -7.573 0.416 0.536 H41 IYL 85 IYL H42 H42 H 0 1 N N N -15.054 18.897 -24.278 11.949 4.989 -0.678 H42 IYL 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal IYL C31 N2 SING N N 1 IYL O5 C23 DOUB N N 2 IYL N2 C32 SING N N 3 IYL N2 C30 SING N N 4 IYL C29 C30 SING Y N 5 IYL C29 C28 DOUB Y N 6 IYL C30 C33 DOUB Y N 7 IYL C23 C8 SING N N 8 IYL C23 O4 SING N N 9 IYL C9 C10 DOUB Y N 10 IYL C9 C8 SING Y N 11 IYL C28 C27 SING Y N 12 IYL C10 C11 SING Y N 13 IYL C8 C7 DOUB Y N 14 IYL C33 C26 SING Y N 15 IYL C27 C26 DOUB Y N 16 IYL C27 C6 SING N N 17 IYL C11 C22 DOUB Y N 18 IYL C11 C12 SING N N 19 IYL C7 C22 SING Y N 20 IYL C7 C6 SING N N 21 IYL C26 O6 SING N N 22 IYL N1 C12 SING N N 23 IYL N1 C13 SING N N 24 IYL C12 O3 DOUB N N 25 IYL C6 C5 DOUB N N 26 IYL C13 C14 SING N N 27 IYL O6 C25 SING N N 28 IYL C5 C25 SING N N 29 IYL C5 C4 SING N N 30 IYL C14 O SING N N 31 IYL C25 C24 DOUB N N 32 IYL C4 C3 DOUB N N 33 IYL O C15 SING N N 34 IYL C24 C2 SING N N 35 IYL C3 C2 SING N N 36 IYL C15 C16 SING N N 37 IYL C2 N DOUB N N 38 IYL O1 C16 SING N N 39 IYL O1 C17 SING N N 40 IYL O2 C21 SING N N 41 IYL C21 C20 SING N N 42 IYL C20 C19 SING N N 43 IYL C19 C18 SING N N 44 IYL C18 C17 SING N N 45 IYL N C SING N N 46 IYL N C1 SING N N 47 IYL N1 H1 SING N N 48 IYL C9 H2 SING N N 49 IYL C1 H3 SING N N 50 IYL C1 H4 SING N N 51 IYL C1 H5 SING N N 52 IYL C4 H6 SING N N 53 IYL O4 H7 SING N N 54 IYL C3 H8 SING N N 55 IYL C H9 SING N N 56 IYL C H10 SING N N 57 IYL C H11 SING N N 58 IYL C10 H12 SING N N 59 IYL C13 H13 SING N N 60 IYL C13 H14 SING N N 61 IYL C14 H15 SING N N 62 IYL C14 H16 SING N N 63 IYL C15 H17 SING N N 64 IYL C15 H18 SING N N 65 IYL C16 H19 SING N N 66 IYL C16 H20 SING N N 67 IYL C17 H21 SING N N 68 IYL C17 H22 SING N N 69 IYL C18 H23 SING N N 70 IYL C18 H24 SING N N 71 IYL C19 H25 SING N N 72 IYL C19 H26 SING N N 73 IYL C20 H27 SING N N 74 IYL C20 H28 SING N N 75 IYL C21 H29 SING N N 76 IYL C21 H30 SING N N 77 IYL C22 H31 SING N N 78 IYL C24 H32 SING N N 79 IYL C28 H33 SING N N 80 IYL C29 H34 SING N N 81 IYL C31 H35 SING N N 82 IYL C31 H36 SING N N 83 IYL C31 H37 SING N N 84 IYL C32 H38 SING N N 85 IYL C32 H39 SING N N 86 IYL C32 H40 SING N N 87 IYL C33 H41 SING N N 88 IYL O2 H42 SING N N 89 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor IYL InChI InChI 1.06 "InChI=1S/C34H41N3O7/c1-36(2)24-9-12-27-30(21-24)44-31-22-25(37(3)4)10-13-28(31)32(27)29-20-23(8-11-26(29)34(40)41)33(39)35-14-17-43-19-18-42-16-7-5-6-15-38/h8-13,20-22,38H,5-7,14-19H2,1-4H3,(H-,35,39,40,41)/p+1" IYL InChIKey InChI 1.06 JWWZUBNFGVWRTE-UHFFFAOYSA-O IYL SMILES_CANONICAL CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4cc(ccc4C(O)=O)C(=O)NCCOCCOCCCCCO)=[N+](C)C)c1" IYL SMILES CACTVS 3.385 "CN(C)c1ccc2c(OC3=CC(C=CC3=C2c4cc(ccc4C(O)=O)C(=O)NCCOCCOCCCCCO)=[N+](C)C)c1" IYL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCO" IYL SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2c(c1)OC3=CC(=[N+](C)C)C=CC3=C2c4cc(ccc4C(=O)O)C(=O)NCCOCCOCCCCCO" # _pdbx_chem_comp_identifier.comp_id IYL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[9-[2-carboxy-5-[2-[2-(5-oxidanylpentoxy)ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site IYL "Create component" 2022-04-20 PDBE IYL "Modify descriptor" 2022-08-22 RCSB IYL "Initial release" 2023-02-22 RCSB #